Wall clock time and date at job start Mon Mar 30 2020 02:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 H 1.08991 * 109.30491 * 55.41341 * 10 9 7 12 12 N 1.46668 * 109.30230 * 296.01844 * 10 9 7 13 13 C 1.47154 * 110.22045 * 187.42570 * 12 10 9 14 14 C 1.52870 * 108.57078 * 71.21494 * 13 12 10 15 15 C 1.50816 * 109.95737 * 309.38553 * 14 13 12 16 16 N 1.32451 * 118.31159 * 196.83987 * 15 14 13 17 17 C 1.31618 * 122.18278 * 180.43578 * 16 15 14 18 18 C 1.38238 * 120.68100 * 0.02668 * 17 16 15 19 19 C 1.38487 * 118.93223 * 359.88909 * 18 17 16 20 20 C 1.37784 * 121.40724 * 17.14730 * 15 14 13 21 21 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 23 23 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 24 24 H 1.00897 * 111.00220 * 310.83381 * 12 10 9 25 25 H 1.08996 * 109.61150 * 311.49329 * 13 12 10 26 26 H 1.09005 * 109.77192 * 191.03467 * 13 12 10 27 27 H 1.09007 * 109.39039 * 189.23456 * 14 13 12 28 28 H 1.08999 * 109.39268 * 69.53521 * 14 13 12 29 29 H 1.08003 * 119.66164 * 180.02562 * 17 16 15 30 30 H 1.07995 * 120.53215 * 179.91127 * 18 17 16 31 31 H 1.07999 * 120.65030 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9233 -3.5564 0.8463 12 7 3.0220 -3.6359 -1.2445 13 6 3.8583 -4.8423 -1.3474 14 6 2.9510 -6.0418 -1.6211 15 6 1.8205 -6.0705 -0.6232 16 7 1.1365 -7.1958 -0.4810 17 6 0.1306 -7.3031 0.3610 18 6 -0.2552 -6.2281 1.1397 19 6 0.4357 -5.0336 1.0222 20 6 1.4933 -4.9595 0.1232 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5568 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 2.4168 -3.5459 -2.0468 25 1 4.3957 -4.9959 -0.4116 26 1 4.5709 -4.7284 -2.1643 27 1 3.5310 -6.9609 -1.5374 28 1 2.5424 -5.9641 -2.6286 29 1 -0.3988 -8.2408 0.4444 30 1 -1.0818 -6.3184 1.8287 31 1 0.1581 -4.1762 1.6174 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259649030.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:55 Heat of formation + Delta-G solvation = 6.108259 kcal Electronic energy + Delta-G solvation = -14437.132810 eV Core-core repulsion = 12102.793054 eV Total energy + Delta-G solvation = -2334.339757 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.67024 -38.28743 -35.52881 -34.20037 -31.90354 -31.77941 -29.05649 -26.01090 -24.73907 -24.50003 -22.05420 -21.43393 -18.56666 -17.59628 -17.40967 -16.73752 -16.40571 -15.80065 -15.32042 -15.06399 -14.66855 -14.06929 -14.03152 -13.79598 -13.49589 -13.13719 -12.88737 -12.54814 -12.44097 -12.30438 -11.94913 -11.56316 -11.20402 -10.61399 -10.52356 -10.35769 -9.70276 -9.24263 -8.13245 -6.19348 0.15368 0.31249 1.42803 1.44389 1.57611 2.46741 2.80468 3.18443 3.26045 3.52185 3.80163 3.88778 4.01171 4.16892 4.21413 4.41688 4.51399 4.61943 4.66516 4.86444 4.91832 4.94403 5.10680 5.22003 5.36711 5.45051 5.61433 5.78374 5.85373 6.19664 6.38548 6.54414 6.94696 7.00142 7.47776 8.98693 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.038863 B = 0.008305 C = 0.007078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.303676 B = 3370.500818 C = 3954.969413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.003 4.003 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.508 4.508 8 H 0.063 0.937 9 C 0.042 3.958 10 C 0.145 3.855 11 H 0.073 0.927 12 N -0.670 5.670 13 C 0.057 3.943 14 C -0.097 4.097 15 C 0.110 3.890 16 N -0.507 5.507 17 C 0.089 3.911 18 C -0.174 4.174 19 C -0.084 4.084 20 C -0.168 4.168 21 H 0.260 0.740 22 H -0.013 1.013 23 H 0.007 0.993 24 H 0.338 0.662 25 H 0.070 0.930 26 H 0.107 0.893 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.189 0.811 30 H 0.163 0.837 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.119 -12.528 -0.122 12.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.199 4.199 3 Si 0.786 3.214 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.005 3.995 10 C 0.034 3.966 11 H 0.091 0.909 12 N -0.298 5.298 13 C -0.072 4.072 14 C -0.137 4.137 15 C -0.025 4.025 16 N -0.216 5.216 17 C -0.069 4.069 18 C -0.193 4.193 19 C -0.110 4.110 20 C -0.172 4.172 21 H 0.069 0.931 22 H 0.006 0.994 23 H 0.025 0.975 24 H 0.156 0.844 25 H 0.089 0.911 26 H 0.125 0.875 27 H 0.118 0.882 28 H 0.105 0.895 29 H 0.205 0.795 30 H 0.181 0.819 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.766 -12.714 -0.381 13.265 hybrid contribution -1.069 1.137 0.457 1.626 sum 2.697 -11.577 0.076 11.887 Atomic orbital electron populations 1.70096 1.07582 1.27299 1.52907 1.25872 0.95634 1.02949 0.95474 0.85458 0.79186 0.79368 0.77358 1.18818 1.20894 1.20801 1.21528 0.93594 0.91249 1.48280 0.91884 1.19061 0.93120 0.92169 0.95129 1.20313 0.93445 0.89604 0.93269 0.90887 1.60903 1.26599 1.38422 1.03854 1.22229 0.95496 0.86193 1.03324 1.21142 0.93995 1.01935 0.96588 1.21301 0.96735 0.88188 0.96322 1.67540 1.07955 1.26280 1.19868 1.23217 0.92886 0.99752 0.91054 1.22438 1.01804 0.93180 1.01877 1.21885 0.93862 0.98694 0.96590 1.21671 0.98770 0.98347 0.98429 0.93144 0.99444 0.97501 0.84388 0.91099 0.87514 0.88172 0.89510 0.79464 0.81907 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.42 13.29 21.45 0.28 -56.13 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.96 44.69 29.54 68.60 2.03 46.71 16 4 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.51 -28.33 8.81 25.60 0.23 -28.10 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.04 2.17 4.18 29.85 0.12 2.29 16 10 C 0.14 5.98 2.47 44.14 0.11 6.09 16 11 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 12 N -0.67 -24.86 6.33 -495.97 -3.14 -28.00 16 13 C 0.06 1.60 6.61 86.21 0.57 2.17 16 14 C -0.10 -2.63 6.06 29.84 0.18 -2.45 16 15 C 0.11 3.67 6.66 42.39 0.28 3.95 16 16 N -0.51 -16.08 10.22 -183.86 -1.88 -17.96 16 17 C 0.09 2.39 11.19 84.72 0.95 3.34 16 18 C -0.17 -4.80 10.12 22.33 0.23 -4.57 16 19 C -0.08 -2.94 9.17 22.51 0.21 -2.73 16 20 C -0.17 -6.25 5.47 -19.86 -0.11 -6.36 16 21 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 22 H -0.01 -0.72 8.11 -2.39 -0.02 -0.74 16 23 H 0.01 0.37 6.29 -2.39 -0.02 0.35 16 24 H 0.34 12.79 8.54 -89.70 -0.77 12.03 16 25 H 0.07 1.98 8.05 -2.39 -0.02 1.96 16 26 H 0.11 2.42 8.14 -2.38 -0.02 2.40 16 27 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 28 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.19 3.43 8.06 -2.91 -0.02 3.40 16 30 H 0.16 3.33 8.06 -2.91 -0.02 3.30 16 31 H 0.13 4.75 6.43 -2.91 -0.02 4.73 16 Total: -1.00 -65.26 259.06 0.88 -64.38 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.37 Total: 17.06 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: 3.23 Total: -26.06 kcal Atomic # 7 Polarization: -97.35 SS G_CDS: -4.74 Total: -102.09 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -65.26 0.88 -64.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259649030.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.484 kcal (2) G-P(sol) polarization free energy of solvation -65.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds