Wall clock time and date at job start Mon Mar 30 2020 02:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.30038 * 304.58697 * 10 9 7 12 12 N 1.46661 * 109.30692 * 63.97602 * 10 9 7 13 13 C 1.47162 * 110.22410 * 172.51061 * 12 10 9 14 14 C 1.52881 * 108.54772 * 288.73806 * 13 12 10 15 15 C 1.50820 * 109.93862 * 50.63399 * 14 13 12 16 16 N 1.32462 * 118.30039 * 163.04906 * 15 14 13 17 17 C 1.31618 * 122.18104 * 179.76172 * 16 15 14 18 18 C 1.38234 * 120.68057 * 0.02562 * 17 16 15 19 19 C 1.38485 * 118.93182 * 0.06342 * 18 17 16 20 20 C 1.37771 * 121.41956 * 342.96461 * 15 14 13 21 21 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 23 23 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 24 24 H 1.00898 * 110.99902 * 295.91815 * 12 10 9 25 25 H 1.09003 * 109.61900 * 169.02944 * 13 12 10 26 26 H 1.08996 * 109.63196 * 48.46553 * 13 12 10 27 27 H 1.08999 * 109.39492 * 290.49360 * 14 13 12 28 28 H 1.09000 * 109.39358 * 170.77559 * 14 13 12 29 29 H 1.08002 * 119.66146 * 179.97438 * 17 16 15 30 30 H 1.08000 * 120.53302 * 180.08574 * 18 17 16 31 31 H 1.08007 * 120.64372 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9234 -3.5564 -0.8475 12 7 3.0221 -3.6359 1.2433 13 6 3.8573 -4.8431 1.3469 14 6 2.9484 -6.0411 1.6226 15 6 1.8177 -6.0692 0.6250 16 7 1.1335 -7.1945 0.4828 17 6 0.1297 -7.3027 -0.3616 18 6 -0.2528 -6.2290 -1.1438 19 6 0.4384 -5.0348 -1.0265 20 6 1.4932 -4.9596 -0.1243 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5568 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 3.5851 -2.8006 1.3005 25 1 4.5683 -4.7271 2.1650 26 1 4.3941 -4.9985 0.4111 27 1 2.5402 -5.9614 2.6302 28 1 3.5271 -6.9611 1.5398 29 1 -0.4000 -8.2402 -0.4449 30 1 -1.0777 -6.3200 -1.8349 31 1 0.1632 -4.1784 -1.6244 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259649034.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:56 Heat of formation + Delta-G solvation = 26.496829 kcal Electronic energy + Delta-G solvation = -14424.270427 eV Core-core repulsion = 12090.814785 eV Total energy + Delta-G solvation = -2333.455642 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.20832 -36.76625 -33.82359 -32.44115 -30.79312 -30.23103 -27.35609 -24.54323 -23.36050 -22.89893 -20.52228 -19.40154 -16.76177 -16.37035 -16.07904 -15.09757 -14.62590 -14.39007 -14.07054 -13.82883 -13.00805 -12.78345 -12.55280 -11.99825 -11.95727 -11.57417 -11.09461 -11.06877 -10.62993 -10.48481 -10.40442 -9.82759 -9.35409 -9.14211 -8.88041 -8.41129 -8.34650 -7.73855 -6.05025 -4.07599 1.51801 1.70620 3.28064 3.36075 3.38395 4.15949 4.41381 4.58221 4.76632 5.06503 5.27531 5.32828 5.37044 5.48691 5.58355 5.65400 5.80072 5.98878 6.06140 6.09441 6.24850 6.36360 6.51332 6.56973 6.91417 7.09056 7.39464 7.59534 7.84995 7.90564 8.10975 8.31477 8.37348 8.96212 9.55903 11.06071 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.038784 B = 0.008310 C = 0.007071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.765943 B = 3368.813234 C = 3958.835554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.035 3.965 10 C 0.130 3.870 11 H 0.042 0.958 12 N -0.671 5.671 13 C 0.051 3.949 14 C -0.059 4.059 15 C 0.129 3.871 16 N -0.496 5.496 17 C 0.085 3.915 18 C -0.182 4.182 19 C -0.068 4.068 20 C -0.104 4.104 21 H 0.260 0.740 22 H 0.023 0.977 23 H 0.029 0.971 24 H 0.356 0.644 25 H 0.077 0.923 26 H 0.028 0.972 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.148 0.852 30 H 0.130 0.870 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.546 -10.421 -0.769 11.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.072 0.928 9 C -0.003 4.003 10 C 0.020 3.980 11 H 0.059 0.941 12 N -0.304 5.304 13 C -0.080 4.080 14 C -0.097 4.097 15 C -0.007 4.007 16 N -0.205 5.205 17 C -0.074 4.074 18 C -0.202 4.202 19 C -0.095 4.095 20 C -0.106 4.106 21 H 0.070 0.930 22 H 0.042 0.958 23 H 0.047 0.953 24 H 0.177 0.823 25 H 0.095 0.905 26 H 0.046 0.954 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.166 0.834 30 H 0.148 0.852 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.130 -11.261 0.133 11.688 hybrid contribution 0.647 1.875 -1.238 2.338 sum 3.777 -9.385 -1.105 10.177 Atomic orbital electron populations 1.69964 1.06036 1.26574 1.50502 1.24979 0.94819 0.99186 0.95228 0.86542 0.80014 0.83873 0.77568 1.19804 1.21127 1.20981 1.21120 0.92700 0.90844 1.50920 0.92815 1.19227 0.93294 0.89869 0.97870 1.20507 0.95418 0.92212 0.89874 0.94056 1.60610 1.28120 1.04054 1.37641 1.21982 0.94503 0.91564 0.99931 1.20393 0.93539 0.98158 0.97629 1.20961 0.95933 0.88196 0.95589 1.67443 1.07284 1.26679 1.19109 1.22492 0.93924 0.98367 0.92576 1.22049 1.01711 0.94427 1.01975 1.21750 0.93290 0.97783 0.96631 1.20809 0.97166 0.96523 0.96145 0.92984 0.95850 0.95307 0.82334 0.90488 0.95387 0.89593 0.90422 0.83448 0.85238 0.84094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -13.87 8.53 -34.44 -0.29 -14.16 16 8 H 0.05 1.38 7.07 -52.49 -0.37 1.01 16 9 C 0.03 0.86 4.32 -27.88 -0.12 0.74 16 10 C 0.13 2.70 2.49 -69.10 -0.17 2.53 16 11 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 12 N -0.67 -12.79 6.44 -108.10 -0.70 -13.48 16 13 C 0.05 0.77 6.58 -3.74 -0.02 0.75 16 14 C -0.06 -0.92 6.18 -27.89 -0.17 -1.09 16 15 C 0.13 2.35 6.66 -82.43 -0.55 1.80 16 16 N -0.50 -8.70 10.22 -9.47 -0.10 -8.79 16 17 C 0.09 1.30 11.19 -17.64 -0.20 1.10 16 18 C -0.18 -2.76 10.12 -39.49 -0.40 -3.16 16 19 C -0.07 -1.23 9.17 -39.20 -0.36 -1.59 16 20 C -0.10 -2.02 5.47 -104.61 -0.57 -2.59 16 21 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 22 H 0.02 0.61 6.30 -51.93 -0.33 0.28 16 23 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.36 6.77 7.64 -39.29 -0.30 6.47 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.03 0.42 8.05 -51.93 -0.42 0.00 16 27 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.15 1.72 8.06 -52.49 -0.42 1.29 16 30 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.14 2.54 6.44 -52.48 -0.34 2.20 16 LS Contribution 257.62 15.07 3.88 3.88 Total: -1.00 -30.15 257.62 -8.00 -38.15 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -3.85 Total: 3.71 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -2.96 Total: -14.13 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.06 Total: -47.65 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.15 -8.00 -38.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259649034.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.648 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds