Wall clock time and date at job start Mon Mar 30 2020 02:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.71186 * 2 1 4 4 C 1.53418 * 109.67860 * 120.53172 * 2 1 3 5 5 C 1.53074 * 108.27658 * 54.98740 * 4 2 1 6 6 H 1.08995 * 109.44001 * 288.23677 * 5 4 2 7 7 C 1.50708 * 109.43821 * 168.32258 * 5 4 2 8 8 H 1.08003 * 119.99759 * 275.06208 * 7 5 4 9 9 C 1.37874 * 120.00299 * 95.33858 * 7 5 4 10 10 N 1.31516 * 119.99607 * 5.39191 * 9 7 5 11 11 Si 1.86797 * 120.00005 * 185.39527 * 9 7 5 12 12 H 1.48502 * 109.47091 * 89.99654 * 11 9 7 13 13 H 1.48504 * 109.46859 * 209.99754 * 11 9 7 14 14 H 1.48502 * 109.47145 * 329.99853 * 11 9 7 15 15 C 1.50766 * 109.66584 * 48.25847 * 5 4 2 16 16 C 1.38511 * 118.75525 * 162.22117 * 15 5 4 17 17 C 1.38095 * 120.31733 * 179.84241 * 16 15 5 18 18 C 1.38299 * 119.98158 * 359.97438 * 17 16 15 19 19 C 1.37970 * 119.95922 * 0.09397 * 18 17 16 20 20 C 1.38368 * 121.40889 * 342.20895 * 15 5 4 21 21 O 1.35844 * 121.80762 * 0.30461 * 20 15 5 22 22 H 1.08999 * 109.47231 * 299.46721 * 1 2 3 23 23 H 1.09000 * 109.46931 * 59.47064 * 1 2 3 24 24 H 1.09002 * 109.47151 * 179.46692 * 1 2 3 25 25 H 1.08994 * 109.70205 * 295.28806 * 4 2 1 26 26 H 1.09003 * 109.73850 * 174.70291 * 4 2 1 27 27 H 0.97000 * 119.99493 * 180.02562 * 10 9 7 28 28 H 1.08000 * 119.84172 * 359.86293 * 16 15 5 29 29 H 1.07998 * 120.01142 * 179.97438 * 17 16 15 30 30 H 1.07996 * 120.02038 * 180.11191 * 18 17 16 31 31 H 1.07992 * 119.89421 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0466 -0.7339 1.2443 5 6 1.4230 -2.1316 1.2707 6 1 0.3650 -2.0521 1.5206 7 6 2.1213 -2.9728 2.3080 8 1 3.0321 -3.4955 2.0555 9 6 1.5945 -3.0797 3.5777 10 7 0.4294 -2.5358 3.8540 11 14 2.5356 -3.9970 4.9052 12 1 3.4270 -3.0510 5.6234 13 1 1.5763 -4.5993 5.8655 14 1 3.3517 -5.0697 4.2819 15 6 1.5708 -2.7788 -0.0829 16 6 1.4211 -4.1521 -0.1847 17 6 1.5466 -4.7780 -1.4093 18 6 1.8226 -4.0330 -2.5412 19 6 1.9742 -2.6649 -2.4456 20 6 1.8505 -2.0311 -1.2130 21 8 2.0110 -0.6833 -1.1582 22 1 -0.3633 0.5055 0.8947 23 1 -0.3633 0.5220 -0.8852 24 1 -0.3633 -1.0276 -0.0096 25 1 1.7576 -0.1855 2.1408 26 1 3.1325 -0.8168 1.1984 27 1 0.0589 -2.6107 4.7474 28 1 1.2049 -4.7360 0.6977 29 1 1.4293 -5.8491 -1.4829 30 1 1.9191 -4.5216 -3.4995 31 1 2.1892 -2.0841 -3.3303 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259676782.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:06 Heat of formation + Delta-G solvation = -44.136310 kcal Electronic energy + Delta-G solvation = -14854.479082 eV Core-core repulsion = 12485.667806 eV Total energy + Delta-G solvation = -2368.811276 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.58572 -38.34725 -36.28397 -33.88773 -32.21366 -30.89198 -29.19235 -27.22141 -24.51292 -24.03095 -22.86795 -19.88271 -18.59716 -18.20274 -17.41634 -16.73402 -16.30255 -15.78404 -15.10945 -14.84223 -14.74020 -14.28647 -13.91041 -13.63452 -13.12415 -13.00222 -12.86898 -12.74471 -12.38304 -12.31439 -12.01659 -11.86126 -11.43384 -11.11882 -10.78331 -10.56182 -9.48748 -8.88988 -8.17060 -6.26342 0.64586 0.68253 1.37770 1.39504 1.49308 2.38784 2.53076 3.05604 3.11425 3.96806 4.10829 4.17553 4.21384 4.31293 4.41417 4.54128 4.66894 4.74931 4.82692 4.90671 5.00889 5.12284 5.25949 5.34427 5.43592 5.56886 5.64538 5.72650 5.78411 6.03521 6.11263 6.32757 6.68037 6.86848 7.39020 8.90220 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.028673 B = 0.011631 C = 0.009127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.302739 B = 2406.808686 C = 3067.241966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.085 3.915 3 H 0.132 0.868 4 C -0.132 4.132 5 C 0.068 3.932 6 H 0.046 0.954 7 C -0.516 4.516 8 H 0.044 0.956 9 C 0.020 3.980 10 N -0.921 5.921 11 Si 0.951 3.049 12 H -0.275 1.275 13 H -0.282 1.282 14 H -0.270 1.270 15 C -0.145 4.145 16 C -0.094 4.094 17 C -0.162 4.162 18 C -0.098 4.098 19 C -0.163 4.163 20 C 0.097 3.903 21 O -0.325 6.325 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.039 0.961 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.264 0.736 28 H 0.106 0.894 29 H 0.141 0.859 30 H 0.160 0.840 31 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.091 1.016 -9.322 9.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.029 3.971 3 H 0.150 0.850 4 C -0.170 4.170 5 C 0.050 3.950 6 H 0.064 0.936 7 C -0.554 4.554 8 H 0.062 0.938 9 C -0.179 4.179 10 N -0.560 5.560 11 Si 0.776 3.224 12 H -0.200 1.200 13 H -0.207 1.207 14 H -0.195 1.195 15 C -0.146 4.146 16 C -0.112 4.112 17 C -0.180 4.180 18 C -0.116 4.116 19 C -0.181 4.181 20 C 0.052 3.948 21 O -0.240 6.240 22 H 0.092 0.908 23 H 0.096 0.904 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.124 0.876 29 H 0.159 0.841 30 H 0.178 0.822 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.042 1.165 -9.303 9.434 hybrid contribution 0.222 -0.492 1.546 1.638 sum 1.265 0.673 -7.757 7.888 Atomic orbital electron populations 1.22275 0.95092 1.02057 1.03042 1.22776 0.94576 0.96100 0.83622 0.85006 1.22238 0.99487 0.98415 0.96911 1.17805 0.97360 0.91524 0.88308 0.93641 1.21198 1.08874 1.29361 0.95969 0.93787 1.25667 0.95359 0.96318 1.00566 1.70014 1.17852 1.46687 1.21490 0.85663 0.78620 0.78965 0.79110 1.20025 1.20703 1.19475 1.20647 1.02989 0.95332 0.95605 1.21088 0.98321 0.93866 0.97950 1.21305 1.03649 1.00843 0.92216 1.21161 0.98634 0.92454 0.99349 1.20820 1.06727 0.95594 0.94986 1.19069 0.98841 0.82989 0.93905 1.85891 1.77622 1.17053 1.43458 0.90758 0.90402 0.94137 0.92276 0.93491 0.92715 0.87634 0.84121 0.82242 0.83922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.86 8.85 71.98 0.64 -5.22 16 2 C 0.08 3.13 3.97 30.73 0.12 3.25 16 3 H 0.13 3.95 8.14 -2.39 -0.02 3.93 16 4 C -0.13 -5.96 5.09 30.76 0.16 -5.80 16 5 C 0.07 3.47 1.81 -12.24 -0.02 3.45 16 6 H 0.05 2.58 6.08 -2.39 -0.01 2.56 16 7 C -0.52 -28.51 7.00 25.60 0.18 -28.34 16 8 H 0.04 2.48 7.82 -2.91 -0.02 2.46 16 9 C 0.02 1.10 5.45 84.65 0.46 1.56 16 10 N -0.92 -52.90 12.76 21.45 0.27 -52.63 16 11 Si 0.95 43.55 29.54 68.60 2.03 45.57 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 13 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 14 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 15 C -0.14 -6.67 4.85 -19.75 -0.10 -6.76 16 16 C -0.09 -4.07 9.10 22.30 0.20 -3.87 16 17 C -0.16 -5.52 10.04 22.25 0.22 -5.29 16 18 C -0.10 -2.94 10.04 22.22 0.22 -2.72 16 19 C -0.16 -5.49 9.94 22.43 0.22 -5.27 16 20 C 0.10 3.96 6.02 22.52 0.14 4.09 16 21 O -0.33 -12.76 10.02 -91.79 -0.92 -13.68 16 22 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 23 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.04 1.64 5.88 -2.39 -0.01 1.62 16 25 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 26 H 0.05 2.16 8.10 -2.39 -0.02 2.14 16 27 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 28 H 0.11 4.93 7.36 -2.91 -0.02 4.91 16 29 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 30 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 31 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -61.66 256.10 4.94 -56.72 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 1.11 Total: 14.93 kcal Atomic # 6 Polarization: -53.36 SS G_CDS: 2.45 Total: -50.91 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: 0.27 Total: -52.63 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.92 Total: -13.68 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -61.66 4.94 -56.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259676782.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.583 kcal (2) G-P(sol) polarization free energy of solvation -61.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds