Wall clock time and date at job start Mon Mar 30 2020 02:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.70662 * 2 1 4 4 C 1.53409 * 109.67995 * 239.46978 * 2 1 3 5 5 C 1.53072 * 108.28480 * 175.54817 * 4 2 1 6 6 H 1.09003 * 109.41786 * 288.19616 * 5 4 2 7 7 C 1.50700 * 109.43201 * 168.29653 * 5 4 2 8 8 H 1.08006 * 120.00165 * 274.87545 * 7 5 4 9 9 C 1.37879 * 120.00408 * 94.86537 * 7 5 4 10 10 N 1.31518 * 119.99606 * 5.72188 * 9 7 5 11 11 Si 1.86793 * 120.00507 * 185.71857 * 9 7 5 12 12 H 1.48495 * 109.47319 * 89.99877 * 11 9 7 13 13 H 1.48497 * 109.47686 * 210.00452 * 11 9 7 14 14 H 1.48510 * 109.47043 * 330.00457 * 11 9 7 15 15 C 1.50766 * 109.67136 * 48.24316 * 5 4 2 16 16 C 1.38505 * 118.75968 * 162.27849 * 15 5 4 17 17 C 1.38106 * 120.31710 * 179.75712 * 16 15 5 18 18 C 1.38293 * 119.97992 * 0.02562 * 17 16 15 19 19 C 1.37965 * 119.96295 * 0.06240 * 18 17 16 20 20 C 1.38379 * 121.40581 * 342.18684 * 15 5 4 21 21 O 1.35844 * 121.80641 * 0.36833 * 20 15 5 22 22 H 1.09000 * 109.46909 * 299.46050 * 1 2 3 23 23 H 1.08999 * 109.47172 * 59.46508 * 1 2 3 24 24 H 1.08997 * 109.46963 * 179.46892 * 1 2 3 25 25 H 1.08994 * 109.69643 * 295.24201 * 4 2 1 26 26 H 1.08996 * 109.69903 * 55.85083 * 4 2 1 27 27 H 0.96996 * 119.99781 * 179.97438 * 10 9 7 28 28 H 1.08000 * 119.84105 * 359.77658 * 16 15 5 29 29 H 1.07993 * 120.01021 * 180.02562 * 17 16 15 30 30 H 1.08004 * 120.01635 * 180.08589 * 18 17 16 31 31 H 1.07995 * 119.89453 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0466 -0.7338 -1.2442 5 6 3.5728 -0.6184 -1.2707 6 1 3.8546 0.4043 -1.5212 7 6 4.1288 -1.5601 -2.3076 8 1 4.3163 -2.5930 -2.0539 9 6 4.3981 -1.1031 -3.5803 10 7 4.2769 0.1766 -3.8588 11 14 4.9350 -2.3012 -4.9089 12 1 3.7389 -2.8232 -5.6175 13 1 5.8187 -1.6035 -5.8771 14 1 5.6743 -3.4299 -4.2883 15 6 4.1323 -0.9758 0.0829 16 6 5.4757 -1.2970 0.1850 17 6 6.0231 -1.6244 1.4100 18 6 5.2285 -1.6329 2.5419 19 6 3.8893 -1.3156 2.4460 20 6 3.3342 -0.9860 1.2133 21 8 2.0111 -0.6831 1.1583 22 1 -0.3633 0.5054 0.8948 23 1 -0.3633 0.5221 -0.8851 24 1 -0.3633 -1.0276 -0.0095 25 1 1.7583 -1.7839 -1.1976 26 1 1.6280 -0.2766 -2.1407 27 1 4.4666 0.4981 -4.7540 28 1 6.0983 -1.2911 -0.6975 29 1 7.0712 -1.8737 1.4840 30 1 5.6562 -1.8875 3.5004 31 1 3.2697 -1.3230 3.3305 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259676816.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:10 Heat of formation + Delta-G solvation = -31.621420 kcal Electronic energy + Delta-G solvation = -14665.434144 eV Core-core repulsion = 12297.165554 eV Total energy + Delta-G solvation = -2368.268589 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.85161 -36.85538 -34.40415 -32.13947 -31.05706 -29.34776 -27.52712 -25.35864 -22.62378 -21.95414 -21.29590 -18.91632 -17.11889 -16.35422 -15.83619 -14.88104 -14.62141 -14.19517 -13.38494 -13.18326 -12.98077 -12.55339 -12.38099 -12.12856 -11.71737 -11.50473 -11.08081 -11.02308 -10.80029 -10.64135 -10.23924 -10.22725 -9.86978 -9.24439 -8.97613 -8.59610 -7.91562 -7.32141 -6.12729 -4.15849 2.16958 2.19678 3.24923 3.32299 3.35930 3.94370 4.34281 4.60125 5.13202 5.49133 5.53571 5.62592 5.66662 5.76212 5.84325 6.01889 6.15777 6.18699 6.29613 6.34546 6.45061 6.71413 6.83533 6.90268 7.04190 7.20562 7.30273 7.55086 7.63440 7.72244 7.81829 8.22902 8.31706 8.92268 9.47452 10.95674 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.025143 B = 0.011741 C = 0.008564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.381676 B = 2384.176440 C = 3268.725124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.080 3.920 3 H 0.062 0.938 4 C -0.134 4.134 5 C 0.066 3.934 6 H 0.074 0.926 7 C -0.505 4.505 8 H 0.058 0.942 9 C 0.065 3.935 10 N -0.892 5.892 11 Si 0.892 3.108 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.272 1.272 15 C -0.115 4.115 16 C -0.068 4.068 17 C -0.167 4.167 18 C -0.113 4.113 19 C -0.163 4.163 20 C 0.113 3.887 21 O -0.326 6.326 22 H 0.055 0.945 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.263 0.737 28 H 0.130 0.870 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.178 -0.590 7.361 7.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.024 3.976 3 H 0.080 0.920 4 C -0.172 4.172 5 C 0.047 3.953 6 H 0.092 0.908 7 C -0.543 4.543 8 H 0.076 0.924 9 C -0.137 4.137 10 N -0.530 5.530 11 Si 0.720 3.280 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.197 1.197 15 C -0.116 4.116 16 C -0.086 4.086 17 C -0.185 4.185 18 C -0.131 4.131 19 C -0.182 4.182 20 C 0.069 3.931 21 O -0.241 6.241 22 H 0.075 0.925 23 H 0.092 0.908 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.148 0.852 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.310 -0.490 7.333 7.704 hybrid contribution 0.374 -0.578 -1.001 1.215 sum -1.936 -1.068 6.332 6.707 Atomic orbital electron populations 1.21763 0.93473 1.02603 1.01898 1.22615 0.94129 0.95261 0.85625 0.91967 1.22416 0.99928 0.99488 0.95392 1.17986 0.89941 0.99893 0.87447 0.90771 1.20961 1.42828 0.95843 0.94656 0.92415 1.24994 0.94889 0.95066 0.98725 1.69905 1.49182 1.12885 1.20988 0.86579 0.78621 0.81199 0.81596 1.20548 1.21183 1.19727 1.20777 0.94408 1.00591 0.95819 1.21105 0.94755 0.95752 0.97032 1.20990 0.99343 1.04968 0.93238 1.20649 0.93071 1.01406 0.98022 1.20379 0.95229 1.07415 0.95190 1.18838 0.83067 0.97810 0.93433 1.85821 1.21464 1.73655 1.43138 0.92549 0.90808 0.92029 0.92336 0.91021 0.92707 0.85224 0.87082 0.86824 0.86669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.59 37.16 0.36 -1.77 16 2 C 0.08 1.52 3.42 -26.52 -0.09 1.43 16 3 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.13 -2.97 4.78 -26.48 -0.13 -3.09 16 5 C 0.07 1.62 2.45 -92.85 -0.23 1.40 16 6 H 0.07 2.03 7.23 -51.93 -0.38 1.65 16 7 C -0.50 -13.47 7.00 -34.44 -0.24 -13.71 16 8 H 0.06 1.57 7.82 -52.48 -0.41 1.15 16 9 C 0.07 1.76 5.45 -17.82 -0.10 1.66 16 10 N -0.89 -24.91 12.77 55.43 0.71 -24.20 16 11 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 15 C -0.11 -2.63 5.43 -104.44 -0.57 -3.20 16 16 C -0.07 -1.47 9.10 -39.53 -0.36 -1.83 16 17 C -0.17 -3.04 10.05 -39.61 -0.40 -3.44 16 18 C -0.11 -1.93 10.04 -39.66 -0.40 -2.33 16 19 C -0.16 -3.03 9.94 -39.34 -0.39 -3.42 16 20 C 0.11 2.41 6.47 -39.19 -0.25 2.15 16 21 O -0.33 -6.70 9.92 -19.25 -0.19 -6.89 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 26 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.13 2.88 7.36 -52.49 -0.39 2.50 16 29 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 31 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 260.97 15.07 3.93 3.93 Total: -1.00 -28.12 260.97 -7.48 -35.60 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -4.11 Total: 1.90 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: -2.79 Total: -26.14 kcal Atomic # 7 Polarization: -24.91 SS G_CDS: 0.71 Total: -24.20 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.19 Total: -6.89 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.12 -7.48 -35.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259676816.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.978 kcal (2) G-P(sol) polarization free energy of solvation -28.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds