Wall clock time and date at job start Mon Mar 30 2020 03:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31798 * 119.08996 * 2 1 4 4 C 1.32423 * 120.79425 * 180.02562 * 3 2 1 5 5 C 1.38456 * 119.00095 * 359.97438 * 4 3 2 6 6 C 1.38521 * 118.58410 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.48393 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46869 * 90.00061 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99985 * 180.27663 * 10 8 7 12 12 Si 1.86800 * 119.99777 * 0.28166 * 10 8 7 13 13 H 1.48498 * 109.47109 * 89.99834 * 12 10 8 14 14 H 1.48507 * 109.46754 * 209.99574 * 12 10 8 15 15 H 1.48498 * 109.47278 * 329.99405 * 12 10 8 16 16 N 1.31786 * 119.09047 * 180.25260 * 2 1 3 17 17 C 1.51045 * 109.87350 * 180.02562 * 5 4 3 18 18 C 1.54425 * 105.15253 * 17.03368 * 17 5 4 19 19 C 1.51172 * 131.29636 * 179.97438 * 4 3 2 20 20 H 1.09006 * 109.46871 * 90.00076 * 1 2 3 21 21 H 1.09000 * 109.47406 * 209.99736 * 1 2 3 22 22 H 1.08998 * 109.47139 * 330.00748 * 1 2 3 23 23 H 1.09004 * 109.47210 * 330.00354 * 7 6 5 24 24 H 1.08994 * 109.47551 * 210.00007 * 7 6 5 25 25 H 0.96996 * 119.99730 * 180.02562 * 11 10 8 26 26 H 1.08991 * 110.30847 * 135.95856 * 17 5 4 27 27 H 1.09007 * 110.30437 * 258.02256 * 17 5 4 28 28 H 1.08994 * 110.80491 * 92.11459 * 18 17 5 29 29 H 1.08998 * 110.80866 * 215.43743 * 18 17 5 30 30 H 1.08997 * 110.30001 * 44.00384 * 19 4 3 31 31 H 1.08995 * 110.38094 * 281.90448 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1478 1.1517 0.0000 4 6 3.4714 1.1911 -0.0005 5 6 4.1784 0.0007 -0.0005 6 6 3.4710 -1.1903 0.0006 7 6 4.1971 -2.5108 0.0001 8 6 4.4407 -2.9506 1.4207 9 1 4.1032 -2.3357 2.2419 10 6 5.0891 -4.1412 1.6723 11 7 5.2969 -4.5277 2.9121 12 14 5.6725 -5.2052 0.2520 13 1 7.0564 -4.8170 -0.1214 14 1 5.6523 -6.6324 0.6619 15 1 4.7726 -5.0121 -0.9134 16 7 2.1477 -1.1516 -0.0051 17 6 5.6620 0.2845 -0.0005 18 6 5.7906 1.7601 0.4361 19 6 4.4349 2.3560 -0.0011 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5137 23 1 5.1515 -2.4005 -0.5149 24 1 3.5918 -3.2581 -0.5129 25 1 5.7534 -5.3650 3.0890 26 1 6.1716 -0.3661 0.7101 27 1 6.0734 0.1472 -1.0006 28 1 5.9163 1.8347 1.5162 29 1 6.6163 2.2469 -0.0828 30 1 4.1095 3.1162 0.7090 31 1 4.5140 2.7826 -1.0010 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259692717.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:06 Heat of formation + Delta-G solvation = 28.792557 kcal Electronic energy + Delta-G solvation = -14340.820107 eV Core-core repulsion = 12007.464015 eV Total energy + Delta-G solvation = -2333.356092 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.86625 -36.65489 -34.41969 -32.43960 -31.18759 -29.25816 -28.18340 -26.53942 -23.82922 -21.44830 -21.17041 -19.86327 -17.36847 -16.91282 -15.66690 -14.91727 -14.27282 -14.07924 -13.93476 -13.05299 -12.83108 -12.67598 -12.46068 -12.24519 -11.99477 -11.82682 -11.67890 -11.01081 -10.91341 -10.78970 -10.60555 -10.23164 -10.16450 -9.65223 -9.29763 -8.64516 -8.48005 -8.29932 -6.13397 -4.13658 1.49167 1.75185 3.24535 3.33214 3.36485 4.08251 4.27946 4.36121 4.58576 4.81927 4.99736 5.14718 5.18281 5.33264 5.55260 5.64204 5.77664 5.84988 5.88086 5.89188 5.98959 6.08780 6.25276 6.33097 6.41304 6.56449 6.82652 7.01949 7.12330 7.57102 7.72469 8.39203 8.77789 8.88053 9.44571 10.99312 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.027604 B = 0.009839 C = 0.008052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.112284 B = 2845.181894 C = 3476.636523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.305 3.695 3 N -0.535 5.535 4 C 0.151 3.849 5 C -0.206 4.206 6 C 0.237 3.763 7 C 0.027 3.973 8 C -0.509 4.509 9 H 0.071 0.929 10 C 0.074 3.926 11 N -0.896 5.896 12 Si 0.877 3.123 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.263 1.263 16 N -0.515 5.515 17 C -0.072 4.072 18 C -0.118 4.118 19 C -0.066 4.066 20 H 0.078 0.922 21 H 0.083 0.917 22 H 0.078 0.922 23 H 0.035 0.965 24 H 0.042 0.958 25 H 0.266 0.734 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.215 10.949 -7.231 13.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.037 3.963 3 N -0.251 5.251 4 C 0.006 3.994 5 C -0.211 4.211 6 C 0.092 3.908 7 C -0.011 4.011 8 C -0.548 4.548 9 H 0.089 0.911 10 C -0.129 4.129 11 N -0.534 5.534 12 Si 0.704 3.296 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.188 1.188 16 N -0.230 5.230 17 C -0.110 4.110 18 C -0.156 4.156 19 C -0.104 4.104 20 H 0.096 0.904 21 H 0.102 0.898 22 H 0.097 0.903 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.110 0.890 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.153 10.794 -7.125 13.112 hybrid contribution 1.151 -0.695 -0.528 1.445 sum -1.002 10.099 -7.652 12.710 Atomic orbital electron populations 1.20438 0.86330 1.03636 1.03108 1.23082 0.97707 0.83373 0.92120 1.67390 1.09117 1.31041 1.17529 1.22048 0.89716 0.95801 0.91879 1.21897 0.98677 0.94995 1.05503 1.21744 0.88303 0.96111 0.84668 1.18792 0.94343 0.88339 0.99647 1.20654 1.38178 1.06424 0.89538 0.91088 1.24919 0.95231 0.97065 0.95634 1.69884 1.42014 1.22766 1.18721 0.86813 0.79595 0.80036 0.83199 1.19990 1.21012 1.18794 1.68257 1.09724 1.29418 1.15595 1.20822 0.91357 0.96365 1.02446 1.22344 0.95949 0.95418 1.01893 1.20941 0.92122 0.94697 1.02684 0.90360 0.89793 0.90290 0.94694 0.93980 0.92423 0.88962 0.90451 0.90615 0.90160 0.89898 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.32 36.01 0.37 -0.75 16 2 C 0.30 5.99 7.64 -157.20 -1.20 4.79 16 3 N -0.53 -10.32 10.34 -6.86 -0.07 -10.39 16 4 C 0.15 2.76 7.37 -82.03 -0.60 2.16 16 5 C -0.21 -4.10 6.03 -104.27 -0.63 -4.73 16 6 C 0.24 5.42 6.01 -82.25 -0.49 4.93 16 7 C 0.03 0.65 4.27 -29.03 -0.12 0.53 16 8 C -0.51 -14.51 9.65 -34.44 -0.33 -14.85 16 9 H 0.07 2.25 7.98 -52.49 -0.42 1.83 16 10 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 11 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 12 Si 0.88 21.06 27.47 -169.99 -4.67 16.39 16 13 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 15 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 16 N -0.52 -11.63 10.28 -7.00 -0.07 -11.71 16 17 C -0.07 -1.15 6.28 -26.97 -0.17 -1.32 16 18 C -0.12 -1.48 7.08 -25.24 -0.18 -1.65 16 19 C -0.07 -0.88 6.77 -26.91 -0.18 -1.07 16 20 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 21 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 22 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.04 0.80 7.23 -51.93 -0.38 0.42 16 24 H 0.04 1.05 7.19 -51.93 -0.37 0.68 16 25 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 27 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 263.69 15.07 3.97 3.97 Total: -1.00 -32.39 263.69 -7.85 -40.23 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -4.14 Total: -2.16 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -3.64 Total: -9.94 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: 0.63 Total: -48.49 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -32.39 -7.85 -40.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259692717.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.026 kcal (2) G-P(sol) polarization free energy of solvation -32.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds