Wall clock time and date at job start Mon Mar 30 2020 03:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31798 * 119.08996 * 2 1 4 4 C 1.32423 * 120.79425 * 180.02562 * 3 2 1 5 5 C 1.38456 * 119.00095 * 359.97438 * 4 3 2 6 6 C 1.38521 * 118.58410 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.48393 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46869 * 90.00061 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99985 * 180.27663 * 10 8 7 12 12 Si 1.86800 * 119.99777 * 0.28166 * 10 8 7 13 13 H 1.48498 * 109.47109 * 89.99834 * 12 10 8 14 14 H 1.48507 * 109.46754 * 209.99574 * 12 10 8 15 15 H 1.48498 * 109.47278 * 329.99405 * 12 10 8 16 16 N 1.31786 * 119.09047 * 180.25260 * 2 1 3 17 17 C 1.51045 * 109.87350 * 180.02562 * 5 4 3 18 18 C 1.54425 * 105.15253 * 17.03368 * 17 5 4 19 19 C 1.51172 * 131.29636 * 179.97438 * 4 3 2 20 20 H 1.09006 * 109.46871 * 90.00076 * 1 2 3 21 21 H 1.09000 * 109.47406 * 209.99736 * 1 2 3 22 22 H 1.08998 * 109.47139 * 330.00748 * 1 2 3 23 23 H 1.09004 * 109.47210 * 330.00354 * 7 6 5 24 24 H 1.08994 * 109.47551 * 210.00007 * 7 6 5 25 25 H 0.96996 * 119.99730 * 180.02562 * 11 10 8 26 26 H 1.08991 * 110.30847 * 135.95856 * 17 5 4 27 27 H 1.09007 * 110.30437 * 258.02256 * 17 5 4 28 28 H 1.08994 * 110.80491 * 92.11459 * 18 17 5 29 29 H 1.08998 * 110.80866 * 215.43743 * 18 17 5 30 30 H 1.08997 * 110.30001 * 44.00384 * 19 4 3 31 31 H 1.08995 * 110.38094 * 281.90448 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1478 1.1517 0.0000 4 6 3.4714 1.1911 -0.0005 5 6 4.1784 0.0007 -0.0005 6 6 3.4710 -1.1903 0.0006 7 6 4.1971 -2.5108 0.0001 8 6 4.4407 -2.9506 1.4207 9 1 4.1032 -2.3357 2.2419 10 6 5.0891 -4.1412 1.6723 11 7 5.2969 -4.5277 2.9121 12 14 5.6725 -5.2052 0.2520 13 1 7.0564 -4.8170 -0.1214 14 1 5.6523 -6.6324 0.6619 15 1 4.7726 -5.0121 -0.9134 16 7 2.1477 -1.1516 -0.0051 17 6 5.6620 0.2845 -0.0005 18 6 5.7906 1.7601 0.4361 19 6 4.4349 2.3560 -0.0011 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5137 23 1 5.1515 -2.4005 -0.5149 24 1 3.5918 -3.2581 -0.5129 25 1 5.7534 -5.3650 3.0890 26 1 6.1716 -0.3661 0.7101 27 1 6.0734 0.1472 -1.0006 28 1 5.9163 1.8347 1.5162 29 1 6.6163 2.2469 -0.0828 30 1 4.1095 3.1162 0.7090 31 1 4.5140 2.7826 -1.0010 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259692717.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:06 Heat of formation + Delta-G solvation = 7.741825 kcal Electronic energy + Delta-G solvation = -14341.732935 eV Core-core repulsion = 12007.464015 eV Total energy + Delta-G solvation = -2334.268920 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.33582 -37.93562 -36.19750 -34.45233 -32.55832 -31.02884 -29.55945 -27.79393 -25.71755 -22.99587 -22.56277 -21.26235 -19.10479 -18.85753 -16.93389 -16.70077 -15.84554 -15.59930 -15.31914 -14.81714 -14.34219 -14.09239 -13.80189 -13.69871 -13.47403 -13.31091 -12.90812 -12.66998 -12.50896 -12.14915 -12.04930 -11.94731 -11.75161 -11.62937 -11.03403 -10.83720 -10.05602 -9.77575 -8.35504 -6.42758 0.00755 0.17396 1.34443 1.38009 1.49685 2.31813 2.73612 2.82370 2.97205 3.16880 3.55719 3.70484 3.92344 4.16452 4.25014 4.38575 4.59645 4.68865 4.73733 4.78306 4.81434 4.89504 4.91052 5.01603 5.11215 5.18445 5.24915 5.32548 5.42324 5.62841 6.12403 6.18469 6.58668 7.19593 7.23638 8.81174 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.027604 B = 0.009839 C = 0.008052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.112284 B = 2845.181894 C = 3476.636523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.289 3.711 3 N -0.538 5.538 4 C 0.148 3.852 5 C -0.225 4.225 6 C 0.197 3.803 7 C 0.037 3.963 8 C -0.517 4.517 9 H 0.017 0.983 10 C 0.015 3.985 11 N -0.944 5.944 12 Si 0.952 3.048 13 H -0.253 1.253 14 H -0.280 1.280 15 H -0.250 1.250 16 N -0.549 5.549 17 C -0.075 4.075 18 C -0.106 4.106 19 C -0.061 4.061 20 H 0.101 0.899 21 H 0.082 0.918 22 H 0.098 0.902 23 H 0.053 0.947 24 H 0.033 0.967 25 H 0.271 0.729 26 H 0.066 0.934 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.121 0.879 30 H 0.100 0.900 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.423 12.521 -9.291 15.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.023 3.977 3 N -0.254 5.254 4 C 0.002 3.998 5 C -0.229 4.229 6 C 0.054 3.946 7 C -0.001 4.001 8 C -0.555 4.555 9 H 0.036 0.964 10 C -0.183 4.183 11 N -0.583 5.583 12 Si 0.774 3.226 13 H -0.177 1.177 14 H -0.206 1.206 15 H -0.174 1.174 16 N -0.265 5.265 17 C -0.113 4.113 18 C -0.144 4.144 19 C -0.098 4.098 20 H 0.120 0.880 21 H 0.101 0.899 22 H 0.116 0.884 23 H 0.071 0.929 24 H 0.051 0.949 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.118 0.882 28 H 0.090 0.910 29 H 0.140 0.860 30 H 0.118 0.882 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.366 12.380 -9.186 15.476 hybrid contribution 0.838 -1.098 0.199 1.395 sum -0.528 11.282 -8.987 14.434 Atomic orbital electron populations 1.20584 0.83171 1.04492 1.04835 1.23968 0.99686 0.82856 0.91237 1.67563 1.09759 1.30537 1.17553 1.23018 0.89819 0.97315 0.89666 1.22327 1.00987 0.94518 1.05027 1.21662 0.89102 0.96519 0.87365 1.18571 0.95252 0.89440 0.96841 1.20740 1.38179 1.06195 0.90409 0.96449 1.25920 0.95082 0.98452 0.98810 1.70038 1.43195 1.23669 1.21436 0.85635 0.80061 0.77572 0.79334 1.17749 1.20567 1.17420 1.68194 1.10029 1.31273 1.17004 1.20970 0.88641 0.98529 1.03143 1.22385 0.97037 0.92713 1.02217 1.21154 0.90636 0.93075 1.04944 0.88046 0.89914 0.88362 0.92920 0.94856 0.92021 0.91529 0.88232 0.91004 0.86026 0.88176 0.86392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.04 10.32 71.24 0.74 -1.31 16 2 C 0.29 11.36 7.64 138.75 1.06 12.42 16 3 N -0.54 -20.16 10.34 -175.61 -1.82 -21.98 16 4 C 0.15 5.19 7.37 42.67 0.31 5.51 16 5 C -0.22 -8.86 6.03 -19.64 -0.12 -8.98 16 6 C 0.20 9.27 6.01 42.54 0.26 9.53 16 7 C 0.04 1.85 4.27 29.10 0.12 1.97 16 8 C -0.52 -30.81 9.65 25.60 0.25 -30.56 16 9 H 0.02 1.17 7.98 -2.91 -0.02 1.15 16 10 C 0.02 0.90 5.47 84.66 0.46 1.36 16 11 N -0.94 -59.19 13.96 21.45 0.30 -58.89 16 12 Si 0.95 43.55 27.47 68.60 1.88 45.44 16 13 H -0.25 -10.70 7.11 99.48 0.71 -10.00 16 14 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 15 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 16 N -0.55 -25.44 10.28 -176.05 -1.81 -27.25 16 17 C -0.07 -2.29 6.28 30.44 0.19 -2.10 16 18 C -0.11 -2.29 7.08 31.56 0.22 -2.06 16 19 C -0.06 -1.38 6.77 30.48 0.21 -1.18 16 20 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 21 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 22 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 23 H 0.05 2.40 7.23 -2.38 -0.02 2.38 16 24 H 0.03 1.69 7.19 -2.39 -0.02 1.67 16 25 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 26 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.10 2.58 8.14 -2.38 -0.02 2.56 16 28 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.10 2.01 8.14 -2.39 -0.02 2.00 16 31 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -74.15 263.69 3.32 -70.83 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 1.06 Total: 7.25 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 3.70 Total: -15.40 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -3.33 Total: -108.12 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.88 Total: 45.44 kcal Total: -74.15 3.32 -70.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259692717.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.574 kcal (2) G-P(sol) polarization free energy of solvation -74.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds