Wall clock time and date at job start Mon Mar 30 2020 03:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31788 * 119.12303 * 2 1 4 4 C 1.32332 * 120.81798 * 180.02562 * 3 2 1 5 5 C 1.38604 * 119.10697 * 0.26738 * 4 3 2 6 6 C 1.50697 * 120.80087 * 179.72995 * 5 4 3 7 7 H 1.09000 * 109.47325 * 359.97438 * 6 5 4 8 8 C 1.50703 * 109.46985 * 240.00047 * 6 5 4 9 9 H 1.07997 * 119.99988 * 265.19532 * 8 6 5 10 10 C 1.37878 * 120.00142 * 85.18846 * 8 6 5 11 11 N 1.31515 * 119.99879 * 5.07556 * 10 8 6 12 12 Si 1.86801 * 120.00136 * 185.07893 * 10 8 6 13 13 H 1.48499 * 109.46782 * 60.00148 * 12 10 8 14 14 H 1.48496 * 109.46933 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47185 * 300.00242 * 12 10 8 16 16 C 1.52995 * 109.47247 * 120.00209 * 6 5 4 17 17 C 1.53003 * 117.50109 * 254.07118 * 16 6 5 18 18 C 1.53006 * 117.50138 * 185.41230 * 16 6 5 19 19 C 1.38595 * 118.39369 * 359.44275 * 5 4 3 20 20 N 1.31802 * 119.12335 * 179.97438 * 2 1 3 21 21 H 1.08997 * 109.46933 * 90.00300 * 1 2 3 22 22 H 1.09004 * 109.47044 * 210.00559 * 1 2 3 23 23 H 1.08996 * 109.46721 * 330.00339 * 1 2 3 24 24 H 1.08003 * 120.44905 * 180.02562 * 4 3 2 25 25 H 0.96999 * 119.99929 * 179.97438 * 11 10 8 26 26 H 1.09002 * 115.55058 * 39.74460 * 16 6 5 27 27 H 1.09005 * 117.49531 * 0.02562 * 17 16 6 28 28 H 1.08999 * 117.49878 * 145.01932 * 17 16 6 29 29 H 1.09001 * 117.49719 * 214.97957 * 18 16 6 30 30 H 1.08997 * 117.49361 * 359.97438 * 18 16 6 31 31 H 1.08000 * 120.44914 * 180.28121 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1484 1.1513 0.0000 4 6 3.4712 1.1904 -0.0005 5 6 4.1809 -0.0001 -0.0067 6 6 5.6879 -0.0001 -0.0136 7 1 6.0512 1.0276 -0.0132 8 6 6.1846 -0.7074 -1.2481 9 1 6.4386 -1.7561 -1.2042 10 6 6.3145 -0.0157 -2.4338 11 7 6.1012 1.2816 -2.4650 12 14 6.7934 -0.9214 -3.9958 13 1 5.7766 -1.9611 -4.2966 14 1 6.8647 0.0415 -5.1241 15 1 8.1186 -1.5645 -3.8086 16 6 6.2036 -0.7244 1.2314 17 6 6.7954 0.1320 2.3527 18 6 7.7141 -0.7220 1.4754 19 6 3.4712 -1.1905 -0.0003 20 7 2.1485 -1.1514 0.0005 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3632 0.8900 0.5138 24 1 3.9907 2.1373 -0.0001 25 1 6.1929 1.7683 -3.2990 26 1 5.6488 -1.6173 1.5195 27 1 6.8169 1.2116 2.2035 28 1 6.6301 -0.1976 3.3785 29 1 8.1528 -1.6131 1.9243 30 1 8.3403 -0.2047 0.7485 31 1 3.9906 -2.1374 -0.0002 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259747160.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:34 Heat of formation + Delta-G solvation = 55.027303 kcal Electronic energy + Delta-G solvation = -14385.203104 eV Core-core repulsion = 12052.984636 eV Total energy + Delta-G solvation = -2332.218468 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.17106 -36.96808 -33.52620 -32.78836 -32.14143 -29.34682 -26.30539 -23.74994 -23.59498 -21.65493 -21.41200 -19.28772 -16.98257 -16.08730 -15.95254 -15.00361 -14.69191 -14.39180 -13.33520 -12.99702 -12.73363 -12.49334 -12.23901 -11.98212 -11.91916 -11.47389 -11.03387 -10.84221 -10.69791 -10.28394 -10.10567 -9.90914 -9.56168 -9.50415 -8.93217 -8.61008 -8.30484 -8.04015 -6.20712 -4.24576 1.91021 1.98849 3.23509 3.28927 3.31303 4.28066 4.62124 4.65704 4.74454 4.96971 5.13361 5.50530 5.68786 5.76754 5.79994 5.89602 5.92383 5.94903 6.08125 6.22221 6.27126 6.36758 6.64280 6.67971 6.82004 6.88049 7.09565 7.37351 7.57394 7.74556 7.91507 8.14403 8.81117 8.94085 9.39998 10.87261 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.021144 B = 0.011919 C = 0.008851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.925087 B = 2348.640623 C = 3162.563154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.264 3.736 3 N -0.525 5.525 4 C 0.137 3.863 5 C -0.114 4.114 6 C 0.104 3.896 7 H 0.066 0.934 8 C -0.507 4.507 9 H 0.062 0.938 10 C 0.067 3.933 11 N -0.884 5.884 12 Si 0.892 3.108 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.274 1.274 16 C -0.123 4.123 17 C -0.200 4.200 18 C -0.168 4.168 19 C 0.139 3.861 20 N -0.528 5.528 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.158 0.842 25 H 0.265 0.735 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.087 -1.850 5.455 6.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.004 4.004 3 N -0.239 5.239 4 C -0.028 4.028 5 C -0.118 4.118 6 C 0.084 3.916 7 H 0.084 0.916 8 C -0.545 4.545 9 H 0.080 0.920 10 C -0.136 4.136 11 N -0.520 5.520 12 Si 0.719 3.281 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.200 1.200 16 C -0.141 4.141 17 C -0.237 4.237 18 C -0.205 4.205 19 C -0.027 4.027 20 N -0.242 5.242 21 H 0.091 0.909 22 H 0.093 0.907 23 H 0.094 0.906 24 H 0.176 0.824 25 H 0.075 0.925 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.092 -1.674 5.324 6.920 hybrid contribution 1.291 -0.427 -1.117 1.760 sum -2.801 -2.101 4.207 5.474 Atomic orbital electron populations 1.20347 0.87171 1.02856 1.02757 1.22805 0.97423 0.84224 0.95914 1.68066 1.10790 1.30446 1.14634 1.23034 0.88583 0.98889 0.92260 1.22396 1.01552 0.93723 0.94169 1.17503 0.84674 0.98444 0.90963 0.91587 1.20894 1.43898 0.96589 0.93089 0.92013 1.25008 0.94634 0.94788 0.99213 1.69886 1.48267 1.06579 1.27280 0.86644 0.79215 0.79649 0.82571 1.20120 1.21224 1.19951 1.22426 0.95237 0.99788 0.96652 1.23007 1.07231 0.98162 0.95295 1.22732 0.94206 1.01135 1.02406 1.22892 0.88531 0.98957 0.92305 1.68074 1.10715 1.30502 1.14923 0.90856 0.90657 0.90638 0.82448 0.92538 0.89734 0.89389 0.90421 0.90371 0.88526 0.82529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.08 10.32 36.01 0.37 -0.71 16 2 C 0.26 5.27 7.64 -157.19 -1.20 4.07 16 3 N -0.52 -11.14 10.33 -10.72 -0.11 -11.25 16 4 C 0.14 3.00 10.96 -17.20 -0.19 2.81 16 5 C -0.11 -2.52 4.78 -104.36 -0.50 -3.02 16 6 C 0.10 2.34 2.09 -92.93 -0.19 2.15 16 7 H 0.07 1.63 7.14 -51.93 -0.37 1.26 16 8 C -0.51 -12.69 7.76 -34.44 -0.27 -12.95 16 9 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 10 C 0.07 1.75 5.45 -17.82 -0.10 1.66 16 11 N -0.88 -23.97 12.92 55.43 0.72 -23.26 16 12 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 14 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 16 C -0.12 -2.37 4.93 -90.62 -0.45 -2.81 16 17 C -0.20 -3.40 10.18 -26.69 -0.27 -3.67 16 18 C -0.17 -2.98 10.02 -26.69 -0.27 -3.25 16 19 C 0.14 2.94 10.02 -17.21 -0.17 2.77 16 20 N -0.53 -11.00 10.33 -10.73 -0.11 -11.11 16 21 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 22 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 23 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.16 3.31 8.01 -52.48 -0.42 2.89 16 25 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.08 1.56 7.48 -51.93 -0.39 1.17 16 27 H 0.09 1.51 8.08 -51.93 -0.42 1.09 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 31 H 0.16 3.07 7.86 -52.49 -0.41 2.66 16 LS Contribution 272.15 15.07 4.10 4.10 Total: -1.00 -27.66 272.15 -7.75 -35.41 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -4.09 Total: 3.50 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -3.23 Total: -12.96 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.49 Total: -45.62 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.66 -7.75 -35.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259747160.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.436 kcal (2) G-P(sol) polarization free energy of solvation -27.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds