Wall clock time and date at job start Mon Mar 30 2020 03:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31788 * 119.12303 * 2 1 4 4 C 1.32332 * 120.81798 * 180.02562 * 3 2 1 5 5 C 1.38604 * 119.10697 * 0.26738 * 4 3 2 6 6 C 1.50697 * 120.80087 * 179.72995 * 5 4 3 7 7 H 1.09000 * 109.47325 * 359.97438 * 6 5 4 8 8 C 1.50703 * 109.46985 * 240.00047 * 6 5 4 9 9 H 1.07997 * 119.99988 * 265.19532 * 8 6 5 10 10 C 1.37878 * 120.00142 * 85.18846 * 8 6 5 11 11 N 1.31515 * 119.99879 * 5.07556 * 10 8 6 12 12 Si 1.86801 * 120.00136 * 185.07893 * 10 8 6 13 13 H 1.48499 * 109.46782 * 60.00148 * 12 10 8 14 14 H 1.48496 * 109.46933 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47185 * 300.00242 * 12 10 8 16 16 C 1.52995 * 109.47247 * 120.00209 * 6 5 4 17 17 C 1.53003 * 117.50109 * 254.07118 * 16 6 5 18 18 C 1.53006 * 117.50138 * 185.41230 * 16 6 5 19 19 C 1.38595 * 118.39369 * 359.44275 * 5 4 3 20 20 N 1.31802 * 119.12335 * 179.97438 * 2 1 3 21 21 H 1.08997 * 109.46933 * 90.00300 * 1 2 3 22 22 H 1.09004 * 109.47044 * 210.00559 * 1 2 3 23 23 H 1.08996 * 109.46721 * 330.00339 * 1 2 3 24 24 H 1.08003 * 120.44905 * 180.02562 * 4 3 2 25 25 H 0.96999 * 119.99929 * 179.97438 * 11 10 8 26 26 H 1.09002 * 115.55058 * 39.74460 * 16 6 5 27 27 H 1.09005 * 117.49531 * 0.02562 * 17 16 6 28 28 H 1.08999 * 117.49878 * 145.01932 * 17 16 6 29 29 H 1.09001 * 117.49719 * 214.97957 * 18 16 6 30 30 H 1.08997 * 117.49361 * 359.97438 * 18 16 6 31 31 H 1.08000 * 120.44914 * 180.28121 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1484 1.1513 0.0000 4 6 3.4712 1.1904 -0.0005 5 6 4.1809 -0.0001 -0.0067 6 6 5.6879 -0.0001 -0.0136 7 1 6.0512 1.0276 -0.0132 8 6 6.1846 -0.7074 -1.2481 9 1 6.4386 -1.7561 -1.2042 10 6 6.3145 -0.0157 -2.4338 11 7 6.1012 1.2816 -2.4650 12 14 6.7934 -0.9214 -3.9958 13 1 5.7766 -1.9611 -4.2966 14 1 6.8647 0.0415 -5.1241 15 1 8.1186 -1.5645 -3.8086 16 6 6.2036 -0.7244 1.2314 17 6 6.7954 0.1320 2.3527 18 6 7.7141 -0.7220 1.4754 19 6 3.4712 -1.1905 -0.0003 20 7 2.1485 -1.1514 0.0005 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3632 0.8900 0.5138 24 1 3.9907 2.1373 -0.0001 25 1 6.1929 1.7683 -3.2990 26 1 5.6488 -1.6173 1.5195 27 1 6.8169 1.2116 2.2035 28 1 6.6301 -0.1976 3.3785 29 1 8.1528 -1.6131 1.9243 30 1 8.3403 -0.2047 0.7485 31 1 3.9906 -2.1374 -0.0002 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259747160.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:34 Heat of formation + Delta-G solvation = 40.490085 kcal Electronic energy + Delta-G solvation = -14385.833485 eV Core-core repulsion = 12052.984636 eV Total energy + Delta-G solvation = -2332.848849 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.80205 -38.50892 -35.22794 -34.43433 -33.88339 -30.89755 -27.98364 -25.41186 -25.35543 -23.11663 -22.92366 -20.91127 -18.76101 -17.86599 -17.53886 -16.68486 -16.36023 -15.94804 -14.88038 -14.73475 -14.34581 -14.04585 -13.82955 -13.40133 -13.26166 -13.10958 -12.86222 -12.48800 -12.22539 -11.97447 -11.78740 -11.56607 -11.33369 -11.05181 -10.54630 -10.49346 -9.98002 -9.71407 -8.17352 -6.25359 0.27865 0.29836 1.39668 1.41600 1.47075 2.38717 2.98042 3.13390 3.23876 3.29290 3.39529 3.99731 4.05417 4.28707 4.34400 4.43435 4.46563 4.75266 4.77969 4.83589 4.87700 4.91740 5.18134 5.19088 5.22428 5.44364 5.49384 5.69524 5.75346 5.84918 6.23834 6.26390 6.86278 7.30483 7.41256 8.89287 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.021144 B = 0.011919 C = 0.008851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.925087 B = 2348.640623 C = 3162.563154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.258 3.742 3 N -0.535 5.535 4 C 0.127 3.873 5 C -0.129 4.129 6 C 0.110 3.890 7 H 0.035 0.965 8 C -0.508 4.508 9 H 0.062 0.938 10 C 0.020 3.980 11 N -0.914 5.914 12 Si 0.942 3.058 13 H -0.277 1.277 14 H -0.290 1.290 15 H -0.265 1.265 16 C -0.141 4.141 17 C -0.183 4.183 18 C -0.165 4.165 19 C 0.138 3.862 20 N -0.533 5.533 21 H 0.087 0.913 22 H 0.094 0.906 23 H 0.091 0.909 24 H 0.155 0.845 25 H 0.261 0.739 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.779 -3.037 6.175 7.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.010 4.010 3 N -0.250 5.250 4 C -0.038 4.038 5 C -0.134 4.134 6 C 0.090 3.910 7 H 0.053 0.947 8 C -0.546 4.546 9 H 0.080 0.920 10 C -0.180 4.180 11 N -0.552 5.552 12 Si 0.769 3.231 13 H -0.202 1.202 14 H -0.216 1.216 15 H -0.190 1.190 16 C -0.160 4.160 17 C -0.220 4.220 18 C -0.202 4.202 19 C -0.028 4.028 20 N -0.248 5.248 21 H 0.105 0.895 22 H 0.113 0.887 23 H 0.110 0.890 24 H 0.172 0.828 25 H 0.070 0.930 26 H 0.114 0.886 27 H 0.099 0.901 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.094 0.906 31 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.780 -2.871 6.053 8.230 hybrid contribution 1.451 -0.057 -1.287 1.941 sum -3.329 -2.928 4.766 6.509 Atomic orbital electron populations 1.20525 0.83502 1.04645 1.04158 1.23838 0.99630 0.83556 0.93929 1.68154 1.10319 1.31214 1.15270 1.23093 0.89247 0.98942 0.92468 1.22316 1.01209 0.94236 0.95612 1.17301 0.85130 0.96762 0.91789 0.94687 1.21205 1.42866 0.96569 0.93951 0.91995 1.25659 0.95250 0.95360 1.01754 1.70005 1.50134 1.07671 1.27411 0.85839 0.79160 0.78463 0.79664 1.20206 1.21621 1.19020 1.22327 0.96399 1.00732 0.96508 1.23049 1.05305 0.97592 0.96015 1.22755 0.93038 1.02149 1.02221 1.23109 0.88961 0.99088 0.91650 1.68197 1.10378 1.30862 1.15318 0.89455 0.88733 0.89018 0.82793 0.93039 0.88591 0.90121 0.87621 0.87752 0.90604 0.81283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.88 10.32 71.24 0.74 -1.14 16 2 C 0.26 9.86 7.64 138.75 1.06 10.92 16 3 N -0.53 -22.32 10.33 -187.84 -1.94 -24.26 16 4 C 0.13 5.61 10.96 84.71 0.93 6.54 16 5 C -0.13 -5.72 4.78 -19.69 -0.09 -5.81 16 6 C 0.11 5.01 2.09 -12.29 -0.03 4.98 16 7 H 0.03 1.79 7.14 -2.39 -0.02 1.77 16 8 C -0.51 -25.48 7.76 25.60 0.20 -25.28 16 9 H 0.06 3.04 7.81 -2.91 -0.02 3.01 16 10 C 0.02 1.04 5.45 84.65 0.46 1.50 16 11 N -0.91 -50.70 12.92 21.45 0.28 -50.42 16 12 Si 0.94 42.31 29.54 68.60 2.03 44.34 16 13 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 14 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 15 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 16 C -0.14 -5.31 4.93 -10.79 -0.05 -5.37 16 17 C -0.18 -5.91 10.18 30.62 0.31 -5.60 16 18 C -0.16 -5.62 10.02 30.62 0.31 -5.32 16 19 C 0.14 5.70 10.02 84.70 0.85 6.55 16 20 N -0.53 -21.36 10.33 -187.85 -1.94 -23.30 16 21 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 22 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 23 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.15 6.72 8.01 -2.91 -0.02 6.69 16 25 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 26 H 0.10 3.37 7.48 -2.39 -0.02 3.35 16 27 H 0.08 2.72 8.08 -2.38 -0.02 2.70 16 28 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 29 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 30 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 31 H 0.17 6.42 7.86 -2.91 -0.02 6.40 16 Total: -1.00 -58.28 272.15 4.21 -54.07 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 1.11 Total: 17.61 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: 4.68 Total: -18.03 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -3.61 Total: -97.99 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -58.28 4.21 -54.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259747160.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.564 kcal (2) G-P(sol) polarization free energy of solvation -58.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds