Wall clock time and date at job start Mon Mar 30 2020 03:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31795 * 119.12441 * 2 1 4 4 C 1.32337 * 120.82153 * 179.97438 * 3 2 1 5 5 C 1.38597 * 119.09979 * 0.28399 * 4 3 2 6 6 C 1.50698 * 120.79551 * 179.72102 * 5 4 3 7 7 H 1.08996 * 109.47562 * 359.97438 * 6 5 4 8 8 C 1.50708 * 109.47177 * 119.99575 * 6 5 4 9 9 H 1.07996 * 119.99828 * 359.97438 * 8 6 5 10 10 C 1.37877 * 119.99725 * 180.02562 * 8 6 5 11 11 N 1.31508 * 120.00294 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 119.99726 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47086 * 359.97438 * 12 10 8 14 14 H 1.48492 * 109.47631 * 119.99602 * 12 10 8 15 15 H 1.48505 * 109.46898 * 239.99766 * 12 10 8 16 16 C 1.53001 * 109.47065 * 239.99437 * 6 5 4 17 17 C 1.53003 * 117.49763 * 128.74776 * 16 6 5 18 18 C 1.52997 * 117.49790 * 60.08703 * 16 6 5 19 19 C 1.38591 * 118.40118 * 359.43062 * 5 4 3 20 20 N 1.31796 * 119.12216 * 179.97438 * 2 1 3 21 21 H 1.08991 * 109.46602 * 90.00189 * 1 2 3 22 22 H 1.08994 * 109.47014 * 210.00070 * 1 2 3 23 23 H 1.09001 * 109.46707 * 330.00048 * 1 2 3 24 24 H 1.08002 * 120.44593 * 179.97438 * 4 3 2 25 25 H 0.97006 * 120.00201 * 180.02562 * 11 10 8 26 26 H 1.09001 * 115.55101 * 274.41708 * 16 6 5 27 27 H 1.08999 * 117.49961 * 0.02562 * 17 16 6 28 28 H 1.09000 * 117.49885 * 145.02411 * 17 16 6 29 29 H 1.09004 * 117.49852 * 214.97768 * 18 16 6 30 30 H 1.08994 * 117.50191 * 359.97438 * 18 16 6 31 31 H 1.08007 * 120.44813 * 180.29354 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1513 0.0000 4 6 3.4713 1.1905 0.0005 5 6 4.1809 0.0000 -0.0050 6 6 5.6878 0.0000 -0.0109 7 1 6.0512 1.0277 -0.0105 8 6 6.1951 -0.7130 1.2161 9 1 5.4961 -1.1247 1.9290 10 6 7.5515 -0.8389 1.4289 11 7 8.4026 -0.3372 0.5609 12 14 8.1802 -1.7234 2.9493 13 1 7.0284 -2.1924 3.7610 14 1 9.0042 -2.8887 2.5391 15 1 9.0078 -0.7918 3.7571 16 6 6.1929 -0.7185 -1.2637 17 6 7.2258 0.0086 -2.1270 18 6 5.7849 -0.1427 -2.6212 19 6 3.4712 -1.1904 0.0013 20 7 2.1484 -1.1514 0.0005 21 1 -0.3632 0.0000 -1.0276 22 1 -0.3633 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 3.9907 2.1374 0.0001 25 1 9.3570 -0.4261 0.7105 26 1 6.2786 -1.8021 -1.1818 27 1 7.5459 0.9987 -1.8023 28 1 7.9908 -0.5966 -2.6135 29 1 5.6026 -0.8474 -3.4325 30 1 5.1564 0.7478 -2.6218 31 1 3.9908 -2.1374 0.0021 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259747161.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:36 Heat of formation + Delta-G solvation = 58.209648 kcal Electronic energy + Delta-G solvation = -14392.504451 eV Core-core repulsion = 12060.423980 eV Total energy + Delta-G solvation = -2332.080471 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.40892 -36.83427 -33.27114 -33.01752 -32.33660 -29.47415 -26.38967 -23.95767 -23.42061 -21.63093 -21.20701 -19.21541 -17.17640 -16.19168 -16.10110 -14.76896 -14.60813 -14.40431 -13.36668 -13.05873 -12.90679 -12.70016 -12.31139 -12.09719 -12.00659 -11.13077 -11.04109 -10.62461 -10.55204 -10.38699 -10.14532 -9.96738 -9.74289 -8.98093 -8.88768 -8.55815 -8.40926 -8.22407 -6.11862 -4.20612 1.66761 1.75204 3.22770 3.32036 3.36029 4.30920 4.44087 4.52755 4.76316 4.97117 5.18072 5.42946 5.67118 5.76888 5.77957 5.81326 5.92780 5.93974 6.10208 6.22889 6.41812 6.49968 6.66062 6.84209 7.00256 7.12071 7.13906 7.34614 7.59059 7.67730 7.81479 8.16887 8.72042 8.81266 9.45135 10.93607 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.029785 B = 0.009663 C = 0.008002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.847668 B = 2897.096024 C = 3498.304237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.273 3.727 3 N -0.524 5.524 4 C 0.126 3.874 5 C -0.126 4.126 6 C 0.114 3.886 7 H 0.041 0.959 8 C -0.521 4.521 9 H 0.058 0.942 10 C 0.071 3.929 11 N -0.871 5.871 12 Si 0.890 3.110 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.284 1.284 16 C -0.085 4.085 17 C -0.132 4.132 18 C -0.228 4.228 19 C 0.151 3.849 20 N -0.524 5.524 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.159 0.841 25 H 0.261 0.739 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.058 0.491 -2.772 7.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.005 3.995 3 N -0.238 5.238 4 C -0.039 4.039 5 C -0.130 4.130 6 C 0.094 3.906 7 H 0.059 0.941 8 C -0.559 4.559 9 H 0.076 0.924 10 C -0.133 4.133 11 N -0.507 5.507 12 Si 0.718 3.282 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.210 1.210 16 C -0.104 4.104 17 C -0.169 4.169 18 C -0.266 4.266 19 C -0.014 4.014 20 N -0.239 5.239 21 H 0.093 0.907 22 H 0.096 0.904 23 H 0.096 0.904 24 H 0.176 0.824 25 H 0.070 0.930 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.868 0.521 -2.810 8.371 hybrid contribution 1.630 -0.492 0.783 1.874 sum -6.238 0.029 -2.027 6.559 Atomic orbital electron populations 1.20385 0.86858 1.03210 1.02897 1.22917 0.97607 0.84116 0.94882 1.68093 1.10448 1.30563 1.14697 1.23093 0.89027 0.98685 0.93120 1.22249 1.01241 0.94041 0.95490 1.17419 0.82692 0.97412 0.93066 0.94074 1.20978 0.91636 1.37531 1.05781 0.92407 1.24932 0.96873 0.95225 0.96253 1.70021 1.02095 1.43972 1.34598 0.86563 0.78955 0.79521 0.83174 1.19772 1.20936 1.20982 1.22212 1.00914 0.98264 0.89026 1.22443 0.89821 1.02032 1.02616 1.23081 1.00379 1.03093 0.99999 1.23067 0.88338 0.99266 0.90754 1.68162 1.10722 1.30398 1.14577 0.90654 0.90395 0.90450 0.82396 0.92959 0.89624 0.89457 0.90963 0.90955 0.90702 0.81796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.32 36.01 0.37 -0.62 16 2 C 0.27 4.94 7.64 -157.19 -1.20 3.74 16 3 N -0.52 -9.92 10.33 -10.72 -0.11 -10.03 16 4 C 0.13 2.43 10.96 -17.20 -0.19 2.24 16 5 C -0.13 -2.60 4.40 -104.36 -0.46 -3.06 16 6 C 0.11 2.59 2.13 -92.92 -0.20 2.39 16 7 H 0.04 1.01 7.70 -51.93 -0.40 0.61 16 8 C -0.52 -13.19 8.24 -34.44 -0.28 -13.47 16 9 H 0.06 1.49 7.61 -52.49 -0.40 1.09 16 10 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 11 N -0.87 -22.80 11.43 55.43 0.63 -22.16 16 12 Si 0.89 20.25 29.54 -169.99 -5.02 15.23 16 13 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 16 C -0.09 -1.85 3.91 -90.62 -0.35 -2.20 16 17 C -0.13 -2.73 9.04 -26.69 -0.24 -2.97 16 18 C -0.23 -4.35 9.87 -26.69 -0.26 -4.61 16 19 C 0.15 3.03 10.19 -17.20 -0.18 2.86 16 20 N -0.52 -10.14 10.34 -10.72 -0.11 -10.25 16 21 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 24 H 0.16 2.73 8.01 -52.49 -0.42 2.31 16 25 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 26 H 0.09 1.94 8.11 -51.93 -0.42 1.52 16 27 H 0.09 1.89 8.05 -51.93 -0.42 1.48 16 28 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 31 H 0.16 3.16 8.06 -52.48 -0.42 2.74 16 LS Contribution 269.67 15.07 4.06 4.06 Total: -1.00 -26.97 269.67 -7.79 -34.76 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -4.15 Total: 2.38 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -3.09 Total: -14.00 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.41 Total: -42.44 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -26.97 -7.79 -34.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259747161.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.969 kcal (2) G-P(sol) polarization free energy of solvation -26.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds