Wall clock time and date at job start Mon Mar 30 2020 03:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31795 * 119.12441 * 2 1 4 4 C 1.32337 * 120.82153 * 179.97438 * 3 2 1 5 5 C 1.38597 * 119.09979 * 0.28399 * 4 3 2 6 6 C 1.50698 * 120.79551 * 179.72102 * 5 4 3 7 7 H 1.08996 * 109.47562 * 359.97438 * 6 5 4 8 8 C 1.50708 * 109.47177 * 119.99575 * 6 5 4 9 9 H 1.07996 * 119.99828 * 359.97438 * 8 6 5 10 10 C 1.37877 * 119.99725 * 180.02562 * 8 6 5 11 11 N 1.31508 * 120.00294 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 119.99726 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47086 * 359.97438 * 12 10 8 14 14 H 1.48492 * 109.47631 * 119.99602 * 12 10 8 15 15 H 1.48505 * 109.46898 * 239.99766 * 12 10 8 16 16 C 1.53001 * 109.47065 * 239.99437 * 6 5 4 17 17 C 1.53003 * 117.49763 * 128.74776 * 16 6 5 18 18 C 1.52997 * 117.49790 * 60.08703 * 16 6 5 19 19 C 1.38591 * 118.40118 * 359.43062 * 5 4 3 20 20 N 1.31796 * 119.12216 * 179.97438 * 2 1 3 21 21 H 1.08991 * 109.46602 * 90.00189 * 1 2 3 22 22 H 1.08994 * 109.47014 * 210.00070 * 1 2 3 23 23 H 1.09001 * 109.46707 * 330.00048 * 1 2 3 24 24 H 1.08002 * 120.44593 * 179.97438 * 4 3 2 25 25 H 0.97006 * 120.00201 * 180.02562 * 11 10 8 26 26 H 1.09001 * 115.55101 * 274.41708 * 16 6 5 27 27 H 1.08999 * 117.49961 * 0.02562 * 17 16 6 28 28 H 1.09000 * 117.49885 * 145.02411 * 17 16 6 29 29 H 1.09004 * 117.49852 * 214.97768 * 18 16 6 30 30 H 1.08994 * 117.50191 * 359.97438 * 18 16 6 31 31 H 1.08007 * 120.44813 * 180.29354 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1513 0.0000 4 6 3.4713 1.1905 0.0005 5 6 4.1809 0.0000 -0.0050 6 6 5.6878 0.0000 -0.0109 7 1 6.0512 1.0277 -0.0105 8 6 6.1951 -0.7130 1.2161 9 1 5.4961 -1.1247 1.9290 10 6 7.5515 -0.8389 1.4289 11 7 8.4026 -0.3372 0.5609 12 14 8.1802 -1.7234 2.9493 13 1 7.0284 -2.1924 3.7610 14 1 9.0042 -2.8887 2.5391 15 1 9.0078 -0.7918 3.7571 16 6 6.1929 -0.7185 -1.2637 17 6 7.2258 0.0086 -2.1270 18 6 5.7849 -0.1427 -2.6212 19 6 3.4712 -1.1904 0.0013 20 7 2.1484 -1.1514 0.0005 21 1 -0.3632 0.0000 -1.0276 22 1 -0.3633 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 3.9907 2.1374 0.0001 25 1 9.3570 -0.4261 0.7105 26 1 6.2786 -1.8021 -1.1818 27 1 7.5459 0.9987 -1.8023 28 1 7.9908 -0.5966 -2.6135 29 1 5.6026 -0.8474 -3.4325 30 1 5.1564 0.7478 -2.6218 31 1 3.9908 -2.1374 0.0021 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259747161.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:36 Heat of formation + Delta-G solvation = 44.465161 kcal Electronic energy + Delta-G solvation = -14393.100456 eV Core-core repulsion = 12060.423980 eV Total energy + Delta-G solvation = -2332.676476 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.90698 -38.50607 -34.94016 -34.51314 -34.05845 -30.95980 -27.99723 -25.48352 -25.17105 -23.16645 -22.81351 -20.93309 -18.86745 -17.90908 -17.55100 -16.62473 -16.15321 -15.93937 -15.05901 -14.72190 -14.39690 -14.09245 -13.90468 -13.41496 -13.12683 -12.90798 -12.86014 -12.32209 -12.22780 -12.13034 -11.76506 -11.64693 -11.46484 -10.71911 -10.64372 -10.25293 -10.05065 -9.81635 -8.07397 -6.20815 0.16854 0.21532 1.40757 1.45737 1.54050 2.44007 2.92469 3.18551 3.22042 3.31934 3.35079 3.91812 4.12262 4.23321 4.35143 4.43720 4.51726 4.73045 4.77762 4.79241 4.88151 5.08872 5.14718 5.19408 5.33261 5.46775 5.59776 5.66228 5.70675 5.90804 6.14819 6.28417 6.84851 7.23507 7.46455 8.96618 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.029785 B = 0.009663 C = 0.008002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.847668 B = 2897.096024 C = 3498.304237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.269 3.731 3 N -0.529 5.529 4 C 0.127 3.873 5 C -0.144 4.144 6 C 0.122 3.878 7 H 0.018 0.982 8 C -0.533 4.533 9 H 0.047 0.953 10 C 0.031 3.969 11 N -0.889 5.889 12 Si 0.944 3.056 13 H -0.275 1.275 14 H -0.281 1.281 15 H -0.283 1.283 16 C -0.101 4.101 17 C -0.136 4.136 18 C -0.197 4.197 19 C 0.148 3.852 20 N -0.532 5.532 21 H 0.095 0.905 22 H 0.090 0.910 23 H 0.092 0.908 24 H 0.173 0.827 25 H 0.260 0.740 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.359 0.413 -3.046 8.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.001 3.999 3 N -0.243 5.243 4 C -0.038 4.038 5 C -0.148 4.148 6 C 0.102 3.898 7 H 0.037 0.963 8 C -0.571 4.571 9 H 0.065 0.935 10 C -0.171 4.171 11 N -0.526 5.526 12 Si 0.770 3.230 13 H -0.200 1.200 14 H -0.207 1.207 15 H -0.209 1.209 16 C -0.120 4.120 17 C -0.173 4.173 18 C -0.234 4.234 19 C -0.017 4.017 20 N -0.247 5.247 21 H 0.114 0.886 22 H 0.109 0.891 23 H 0.110 0.890 24 H 0.190 0.810 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -9.180 0.441 -3.084 9.695 hybrid contribution 1.958 -0.449 0.869 2.189 sum -7.222 -0.008 -2.215 7.554 Atomic orbital electron populations 1.20567 0.83333 1.04598 1.04602 1.23919 0.99714 0.83481 0.92739 1.68231 1.09992 1.30920 1.15175 1.23339 0.89471 0.98881 0.92152 1.22037 1.00059 0.94918 0.97774 1.17167 0.84196 0.95680 0.92724 0.96344 1.21195 0.91696 1.37578 1.06593 0.93520 1.25513 0.97168 0.95962 0.98414 1.70106 1.02106 1.44748 1.35677 0.85733 0.78177 0.78545 0.80500 1.19960 1.20653 1.20932 1.22024 1.02551 0.97399 0.90016 1.22374 0.90840 1.01193 1.02873 1.23058 0.98727 1.03016 0.98619 1.23092 0.88922 0.99127 0.90593 1.68265 1.10145 1.31057 1.15221 0.88613 0.89108 0.88963 0.80990 0.93031 0.90999 0.90885 0.90539 0.88896 0.90210 0.81865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.69 10.32 71.24 0.74 -0.96 16 2 C 0.27 9.15 7.64 138.75 1.06 10.21 16 3 N -0.53 -19.06 10.33 -187.84 -1.94 -21.00 16 4 C 0.13 4.77 10.96 84.70 0.93 5.70 16 5 C -0.14 -5.89 4.40 -19.69 -0.09 -5.98 16 6 C 0.12 5.61 2.13 -12.28 -0.03 5.59 16 7 H 0.02 0.92 7.70 -2.39 -0.02 0.90 16 8 C -0.53 -27.29 8.24 25.60 0.21 -27.08 16 9 H 0.05 2.44 7.61 -2.91 -0.02 2.42 16 10 C 0.03 1.62 5.30 84.66 0.45 2.07 16 11 N -0.89 -47.00 11.43 21.45 0.25 -46.75 16 12 Si 0.94 41.76 29.54 68.60 2.03 43.78 16 13 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 14 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 15 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 16 C -0.10 -4.38 3.91 -10.79 -0.04 -4.42 16 17 C -0.14 -5.59 9.04 30.62 0.28 -5.31 16 18 C -0.20 -7.24 9.87 30.62 0.30 -6.93 16 19 C 0.15 5.86 10.19 84.70 0.86 6.72 16 20 N -0.53 -19.79 10.34 -187.84 -1.94 -21.73 16 21 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 22 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.17 5.82 8.01 -2.91 -0.02 5.79 16 25 H 0.26 13.25 8.31 -92.70 -0.77 12.48 16 26 H 0.07 3.29 8.11 -2.39 -0.02 3.27 16 27 H 0.07 3.20 8.05 -2.39 -0.02 3.18 16 28 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 29 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 30 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 31 H 0.16 6.33 8.06 -2.91 -0.02 6.30 16 Total: -1.00 -56.08 269.67 4.17 -51.92 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 1.11 Total: 14.19 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 4.67 Total: -20.40 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -3.64 Total: -89.48 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.78 kcal Total: -56.08 4.17 -51.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259747161.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.380 kcal (2) G-P(sol) polarization free energy of solvation -56.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds