Wall clock time and date at job start Mon Mar 30 2020 02:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38230 * 119.66413 * 2 1 4 4 C 1.38487 * 118.93650 * 179.91440 * 3 2 1 5 5 C 1.39005 * 118.70475 * 0.03041 * 4 3 2 6 6 C 1.37776 * 119.21953 * 0.11827 * 5 4 3 7 7 N 1.31619 * 119.65936 * 179.97438 * 2 1 3 8 8 C 1.50822 * 121.41083 * 179.48692 * 6 5 4 9 9 C 1.52879 * 109.95464 * 17.14399 * 8 6 5 10 10 N 1.47094 * 108.39220 * 309.33709 * 9 8 6 11 11 C 1.46666 * 110.25723 * 71.49637 * 10 9 8 12 12 H 1.08994 * 109.30078 * 67.62861 * 11 10 9 13 13 C 1.50696 * 109.30278 * 187.22261 * 11 10 9 14 14 H 1.07997 * 120.00012 * 120.41169 * 13 11 10 15 15 C 1.37877 * 119.99842 * 300.40696 * 13 11 10 16 16 N 1.31516 * 120.00069 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99806 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46845 * 90.00621 * 17 15 13 19 19 H 1.48503 * 109.47399 * 210.00111 * 17 15 13 20 20 H 1.48498 * 109.47295 * 330.00717 * 17 15 13 21 21 H 1.09004 * 109.46966 * 90.00094 * 1 2 3 22 22 H 1.08992 * 109.47512 * 210.00192 * 1 2 3 23 23 H 1.09001 * 109.46476 * 330.00696 * 1 2 3 24 24 H 1.08000 * 120.52904 * 359.92686 * 3 2 1 25 25 H 1.08004 * 120.64725 * 180.02562 * 4 3 2 26 26 H 1.08994 * 109.39153 * 137.29743 * 8 6 5 27 27 H 1.09005 * 109.38629 * 256.99795 * 8 6 5 28 28 H 1.09003 * 109.61839 * 69.10517 * 9 8 6 29 29 H 1.09002 * 109.61970 * 189.47439 * 9 8 6 30 30 H 1.00907 * 111.13986 * 307.97071 * 10 9 8 31 31 H 0.97000 * 119.99838 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1912 1.2011 0.0000 4 6 3.5759 1.1836 0.0018 5 6 4.2280 -0.0441 0.0029 6 6 3.4816 -1.2021 -0.0003 7 7 2.1583 -1.1437 0.0005 8 6 4.1377 -2.5601 -0.0108 9 6 5.6029 -2.4349 0.4071 10 7 6.2282 -1.3788 -0.4038 11 6 5.7328 -0.0615 0.0088 12 1 6.0917 0.1598 1.0139 13 6 6.2468 0.9853 -0.9456 14 1 5.5518 1.5950 -1.5038 15 6 7.6044 1.1648 -1.1060 16 7 8.4507 0.4220 -0.4265 17 14 8.2416 2.4629 -2.2885 18 1 8.4081 3.7503 -1.5674 19 1 9.5515 2.0309 -2.8390 20 1 7.2719 2.6395 -3.3992 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3632 0.8901 0.5137 24 1 1.6543 2.1383 -0.0012 25 1 4.1382 2.1057 0.0023 26 1 3.6179 -3.2186 0.6851 27 1 4.0824 -2.9809 -1.0148 28 1 5.6611 -2.1714 1.4632 29 1 6.1141 -3.3826 0.2375 30 1 6.0685 -1.5332 -1.3881 31 1 8.1198 -0.2518 0.1878 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259766029.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:45 Heat of formation + Delta-G solvation = 22.609012 kcal Electronic energy + Delta-G solvation = -14620.603705 eV Core-core repulsion = 12286.979475 eV Total energy + Delta-G solvation = -2333.624230 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.11094 -36.72288 -33.48491 -32.10706 -31.55174 -29.05492 -27.59801 -24.81414 -23.19097 -22.23833 -21.29566 -19.69653 -17.10766 -15.87849 -15.55981 -15.10177 -14.30027 -13.78443 -13.72803 -13.26121 -13.16682 -12.75510 -12.58632 -12.12613 -11.89855 -11.58693 -11.50457 -11.17995 -10.75906 -10.64456 -10.32447 -10.11637 -9.16327 -9.02744 -8.61062 -8.42721 -7.89200 -7.42663 -6.26398 -4.12149 1.66369 1.90766 3.42691 3.46336 3.61842 4.26537 4.53626 4.57389 5.13798 5.18097 5.35592 5.49315 5.57029 5.61804 5.72144 5.73995 5.83590 5.86921 5.97249 6.05814 6.28319 6.35086 6.40815 6.53280 6.75939 6.94911 7.04453 7.32876 7.85725 8.15556 8.46222 8.53255 8.61156 8.94604 9.70771 11.12503 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.033400 B = 0.009956 C = 0.008010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.112683 B = 2811.561005 C = 3494.859038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.101 3.899 3 C -0.185 4.185 4 C -0.057 4.057 5 C -0.120 4.120 6 C 0.112 3.888 7 N -0.494 5.494 8 C -0.098 4.098 9 C 0.050 3.950 10 N -0.666 5.666 11 C 0.238 3.762 12 H 0.046 0.954 13 C -0.616 4.616 14 H 0.052 0.948 15 C 0.038 3.962 16 N -0.887 5.887 17 Si 1.066 2.934 18 H -0.289 1.289 19 H -0.284 1.284 20 H -0.291 1.291 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.124 0.876 25 H 0.140 0.860 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.335 0.665 31 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.140 -1.191 0.899 10.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.039 4.039 3 C -0.205 4.205 4 C -0.083 4.083 5 C -0.123 4.123 6 C -0.024 4.024 7 N -0.205 5.205 8 C -0.138 4.138 9 C -0.081 4.081 10 N -0.294 5.294 11 C 0.130 3.870 12 H 0.063 0.937 13 C -0.655 4.655 14 H 0.070 0.930 15 C -0.173 4.173 16 N -0.521 5.521 17 Si 0.895 3.105 18 H -0.216 1.216 19 H -0.210 1.210 20 H -0.217 1.217 21 H 0.088 0.912 22 H 0.088 0.912 23 H 0.086 0.914 24 H 0.142 0.858 25 H 0.158 0.842 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.154 0.846 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.611 -1.294 0.698 8.736 hybrid contribution -2.020 0.166 0.172 2.034 sum -10.631 -1.128 0.870 10.726 Atomic orbital electron populations 1.20581 0.89714 1.02565 1.02289 1.20961 0.96276 0.88643 0.98024 1.21893 0.95292 0.98581 1.04759 1.21707 0.93227 0.99181 0.94228 1.21880 1.01270 0.92551 0.96629 1.20952 0.88712 0.95314 0.97388 1.67196 1.09808 1.29623 1.13834 1.21101 0.98004 0.92402 1.02319 1.22101 0.90031 0.96965 0.98974 1.61401 1.58658 1.01761 1.07600 1.18305 0.82617 0.88160 0.97958 0.93666 1.21856 0.94426 1.20157 1.29057 0.93021 1.25665 0.93173 0.99726 0.98693 1.70537 1.38090 1.20036 1.23417 0.83596 0.75821 0.75360 0.75705 1.21562 1.20999 1.21687 0.91222 0.91189 0.91351 0.85808 0.84222 0.90745 0.90773 0.91757 0.91100 0.84643 0.89503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 10.17 36.01 0.37 -0.84 16 2 C 0.10 1.77 6.78 -82.68 -0.56 1.21 16 3 C -0.19 -3.24 9.76 -39.49 -0.39 -3.63 16 4 C -0.06 -1.17 8.84 -39.21 -0.35 -1.51 16 5 C -0.12 -2.64 5.46 -104.61 -0.57 -3.21 16 6 C 0.11 2.30 6.66 -82.43 -0.55 1.76 16 7 N -0.49 -9.75 10.13 -5.73 -0.06 -9.81 16 8 C -0.10 -1.76 6.06 -27.89 -0.17 -1.92 16 9 C 0.05 0.93 6.62 -3.78 -0.03 0.91 16 10 N -0.67 -15.08 5.15 -109.39 -0.56 -15.65 16 11 C 0.24 5.79 2.02 -70.25 -0.14 5.64 16 12 H 0.05 1.21 8.01 -51.93 -0.42 0.80 16 13 C -0.62 -16.41 7.86 -34.44 -0.27 -16.68 16 14 H 0.05 1.38 6.74 -52.49 -0.35 1.03 16 15 C 0.04 1.04 5.38 -17.82 -0.10 0.94 16 16 N -0.89 -25.81 13.50 55.43 0.75 -25.07 16 17 Si 1.07 24.43 29.90 -169.99 -5.08 19.34 16 18 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 21 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 24 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 25 H 0.14 2.83 7.18 -52.48 -0.38 2.45 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.06 1.21 8.05 -51.93 -0.42 0.79 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.34 7.72 8.55 -39.29 -0.34 7.38 16 31 H 0.29 8.51 6.37 -40.82 -0.26 8.25 16 LS Contribution 257.36 15.07 3.88 3.88 Total: -1.00 -29.53 257.36 -7.74 -37.27 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -3.91 Total: 7.37 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -2.75 Total: -17.34 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.13 Total: -50.53 kcal Atomic # 14 Polarization: 24.43 SS G_CDS: -5.08 Total: 19.34 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.53 -7.74 -37.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259766029.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.879 kcal (2) G-P(sol) polarization free energy of solvation -29.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds