Wall clock time and date at job start Mon Mar 30 2020 02:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38230 * 119.66413 * 2 1 4 4 C 1.38487 * 118.93650 * 179.91440 * 3 2 1 5 5 C 1.39005 * 118.70475 * 0.03041 * 4 3 2 6 6 C 1.37776 * 119.21953 * 0.11827 * 5 4 3 7 7 N 1.31619 * 119.65936 * 179.97438 * 2 1 3 8 8 C 1.50822 * 121.41083 * 179.48692 * 6 5 4 9 9 C 1.52879 * 109.95464 * 17.14399 * 8 6 5 10 10 N 1.47094 * 108.39220 * 309.33709 * 9 8 6 11 11 C 1.46666 * 110.25723 * 71.49637 * 10 9 8 12 12 H 1.08994 * 109.30078 * 67.62861 * 11 10 9 13 13 C 1.50696 * 109.30278 * 187.22261 * 11 10 9 14 14 H 1.07997 * 120.00012 * 120.41169 * 13 11 10 15 15 C 1.37877 * 119.99842 * 300.40696 * 13 11 10 16 16 N 1.31516 * 120.00069 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99806 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46845 * 90.00621 * 17 15 13 19 19 H 1.48503 * 109.47399 * 210.00111 * 17 15 13 20 20 H 1.48498 * 109.47295 * 330.00717 * 17 15 13 21 21 H 1.09004 * 109.46966 * 90.00094 * 1 2 3 22 22 H 1.08992 * 109.47512 * 210.00192 * 1 2 3 23 23 H 1.09001 * 109.46476 * 330.00696 * 1 2 3 24 24 H 1.08000 * 120.52904 * 359.92686 * 3 2 1 25 25 H 1.08004 * 120.64725 * 180.02562 * 4 3 2 26 26 H 1.08994 * 109.39153 * 137.29743 * 8 6 5 27 27 H 1.09005 * 109.38629 * 256.99795 * 8 6 5 28 28 H 1.09003 * 109.61839 * 69.10517 * 9 8 6 29 29 H 1.09002 * 109.61970 * 189.47439 * 9 8 6 30 30 H 1.00907 * 111.13986 * 307.97071 * 10 9 8 31 31 H 0.97000 * 119.99838 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1912 1.2011 0.0000 4 6 3.5759 1.1836 0.0018 5 6 4.2280 -0.0441 0.0029 6 6 3.4816 -1.2021 -0.0003 7 7 2.1583 -1.1437 0.0005 8 6 4.1377 -2.5601 -0.0108 9 6 5.6029 -2.4349 0.4071 10 7 6.2282 -1.3788 -0.4038 11 6 5.7328 -0.0615 0.0088 12 1 6.0917 0.1598 1.0139 13 6 6.2468 0.9853 -0.9456 14 1 5.5518 1.5950 -1.5038 15 6 7.6044 1.1648 -1.1060 16 7 8.4507 0.4220 -0.4265 17 14 8.2416 2.4629 -2.2885 18 1 8.4081 3.7503 -1.5674 19 1 9.5515 2.0309 -2.8390 20 1 7.2719 2.6395 -3.3992 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3632 0.8901 0.5137 24 1 1.6543 2.1383 -0.0012 25 1 4.1382 2.1057 0.0023 26 1 3.6179 -3.2186 0.6851 27 1 4.0824 -2.9809 -1.0148 28 1 5.6611 -2.1714 1.4632 29 1 6.1141 -3.3826 0.2375 30 1 6.0685 -1.5332 -1.3881 31 1 8.1198 -0.2518 0.1878 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259766029.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:44 Heat of formation + Delta-G solvation = 3.173878 kcal Electronic energy + Delta-G solvation = -14621.446476 eV Core-core repulsion = 12286.979475 eV Total energy + Delta-G solvation = -2334.467001 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.63387 -38.35104 -35.26095 -33.73769 -33.07472 -30.71435 -28.97091 -26.71340 -24.71664 -23.88787 -22.95036 -21.24144 -19.05098 -17.47244 -17.13568 -16.61742 -15.74449 -15.58837 -15.37778 -14.81742 -14.76058 -14.15239 -13.99512 -13.72546 -13.26812 -13.13199 -12.95426 -12.72570 -12.49667 -12.38158 -11.94499 -11.90141 -10.91164 -10.60571 -10.47816 -10.28116 -9.48420 -9.18177 -8.39240 -6.28235 0.17729 0.36797 1.56787 1.64552 1.81793 2.61164 2.79398 3.17227 3.28172 3.73437 3.84634 3.92504 4.04760 4.19775 4.21807 4.41997 4.50604 4.63695 4.77030 4.78634 4.83579 4.89211 5.02160 5.07860 5.20109 5.30869 5.39892 5.82768 5.92966 6.17190 6.53390 6.70776 6.84565 7.04402 7.62000 8.95241 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.033400 B = 0.009956 C = 0.008010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.112683 B = 2811.561005 C = 3494.859038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.101 3.899 3 C -0.179 4.179 4 C -0.074 4.074 5 C -0.154 4.154 6 C 0.102 3.898 7 N -0.506 5.506 8 C -0.090 4.090 9 C 0.054 3.946 10 N -0.679 5.679 11 C 0.245 3.755 12 H 0.008 0.992 13 C -0.620 4.620 14 H 0.045 0.955 15 C -0.009 4.009 16 N -0.916 5.916 17 Si 1.113 2.887 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.278 1.278 21 H 0.086 0.914 22 H 0.074 0.926 23 H 0.097 0.903 24 H 0.163 0.837 25 H 0.130 0.870 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.331 0.669 31 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.333 -0.992 0.331 12.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.039 4.039 3 C -0.198 4.198 4 C -0.100 4.100 5 C -0.158 4.158 6 C -0.034 4.034 7 N -0.217 5.217 8 C -0.130 4.130 9 C -0.076 4.076 10 N -0.308 5.308 11 C 0.136 3.864 12 H 0.025 0.975 13 C -0.659 4.659 14 H 0.064 0.936 15 C -0.213 4.213 16 N -0.551 5.551 17 Si 0.936 3.064 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.203 1.203 21 H 0.104 0.896 22 H 0.093 0.907 23 H 0.115 0.885 24 H 0.180 0.820 25 H 0.148 0.852 26 H 0.113 0.887 27 H 0.102 0.898 28 H 0.074 0.926 29 H 0.114 0.886 30 H 0.149 0.851 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.824 -1.102 0.142 10.881 hybrid contribution -1.480 0.104 0.398 1.536 sum -12.305 -0.998 0.540 12.357 Atomic orbital electron populations 1.20718 0.85915 1.04301 1.03833 1.21854 0.98710 0.87993 0.95376 1.22255 0.93957 1.00486 1.03100 1.21789 0.94917 0.98295 0.94983 1.21720 0.99946 0.94197 0.99914 1.21246 0.89341 0.95732 0.97043 1.67340 1.09097 1.30738 1.14526 1.21051 0.96981 0.91650 1.03302 1.22145 0.90998 0.96634 0.97800 1.61181 1.59782 1.02154 1.07655 1.17933 0.84513 0.88610 0.95326 0.97474 1.22117 0.94433 1.20613 1.28704 0.93628 1.26972 0.93900 1.00923 0.99516 1.70645 1.38431 1.21169 1.24870 0.82977 0.75376 0.73650 0.74363 1.20195 1.21183 1.20287 0.89559 0.90705 0.88456 0.81981 0.85207 0.88712 0.89844 0.92559 0.88569 0.85124 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.94 10.17 71.24 0.72 -1.21 16 2 C 0.10 3.24 6.78 42.59 0.29 3.53 16 3 C -0.18 -5.82 9.76 22.33 0.22 -5.60 16 4 C -0.07 -2.99 8.84 22.51 0.20 -2.79 16 5 C -0.15 -6.89 5.46 -19.86 -0.11 -7.00 16 6 C 0.10 4.11 6.66 42.39 0.28 4.39 16 7 N -0.51 -18.98 10.13 -172.04 -1.74 -20.72 16 8 C -0.09 -3.12 6.06 29.85 0.18 -2.94 16 9 C 0.05 2.02 6.62 86.23 0.57 2.59 16 10 N -0.68 -31.61 5.15 -500.01 -2.58 -34.18 16 11 C 0.24 12.39 2.02 43.40 0.09 12.48 16 12 H 0.01 0.44 8.01 -2.39 -0.02 0.42 16 13 C -0.62 -33.94 7.86 25.60 0.20 -33.74 16 14 H 0.05 2.49 6.74 -2.91 -0.02 2.47 16 15 C -0.01 -0.49 5.38 84.65 0.46 -0.03 16 16 N -0.92 -54.83 13.50 21.45 0.29 -54.54 16 17 Si 1.11 49.60 29.90 68.60 2.05 51.65 16 18 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 20 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 21 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 22 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.10 1.55 8.08 -2.39 -0.02 1.53 16 24 H 0.16 3.94 8.06 -2.91 -0.02 3.92 16 25 H 0.13 5.38 7.18 -2.91 -0.02 5.36 16 26 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 27 H 0.08 2.73 8.14 -2.38 -0.02 2.71 16 28 H 0.06 2.15 8.05 -2.39 -0.02 2.13 16 29 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 30 H 0.33 15.59 8.55 -89.69 -0.77 14.82 16 31 H 0.28 17.01 6.37 -92.71 -0.59 16.42 16 Total: -1.00 -64.89 257.36 1.67 -63.23 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.54 Total: 24.90 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: 3.10 Total: -30.33 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -4.03 Total: -109.44 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 2.05 Total: 51.65 kcal Total: -64.89 1.67 -63.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259766029.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.399 kcal (2) G-P(sol) polarization free energy of solvation -64.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds