Wall clock time and date at job start Mon Mar 30 2020 02:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38233 * 119.66083 * 2 1 4 4 C 1.38488 * 118.93688 * 180.08472 * 3 2 1 5 5 C 1.39009 * 118.70326 * 0.29303 * 4 3 2 6 6 C 1.37780 * 119.21534 * 359.26499 * 5 4 3 7 7 N 1.31621 * 119.66064 * 179.97438 * 2 1 3 8 8 C 1.50823 * 121.41108 * 180.66354 * 6 5 4 9 9 C 1.52872 * 109.95244 * 343.08170 * 8 6 5 10 10 N 1.47157 * 108.57237 * 50.62297 * 9 8 6 11 11 C 1.46664 * 110.22316 * 288.79621 * 10 9 8 12 12 H 1.09002 * 109.30494 * 292.17630 * 11 10 9 13 13 C 1.50698 * 109.30227 * 172.58806 * 11 10 9 14 14 H 1.08000 * 120.00283 * 239.99526 * 13 11 10 15 15 C 1.37885 * 119.99695 * 60.00010 * 13 11 10 16 16 N 1.31509 * 120.00218 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 119.99611 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46825 * 60.00255 * 17 15 13 19 19 H 1.48504 * 109.46782 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47618 * 300.00191 * 17 15 13 21 21 H 1.08995 * 109.47044 * 90.00748 * 1 2 3 22 22 H 1.08998 * 109.46936 * 210.00368 * 1 2 3 23 23 H 1.08999 * 109.47125 * 330.00033 * 1 2 3 24 24 H 1.07996 * 120.53301 * 0.05631 * 3 2 1 25 25 H 1.08002 * 120.64493 * 180.02562 * 4 3 2 26 26 H 1.09003 * 109.39108 * 103.22785 * 8 6 5 27 27 H 1.08999 * 109.38957 * 223.02859 * 8 6 5 28 28 H 1.09002 * 109.61773 * 170.34931 * 9 8 6 29 29 H 1.09001 * 109.61905 * 290.71356 * 9 8 6 30 30 H 1.00904 * 111.00065 * 165.39185 * 10 9 8 31 31 H 0.96995 * 120.00090 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1911 1.2012 0.0000 4 6 3.5759 1.1837 -0.0018 5 6 4.2280 -0.0439 -0.0098 6 6 3.4817 -1.2020 -0.0002 7 7 2.1584 -1.1437 0.0005 8 6 4.1378 -2.5600 0.0067 9 6 5.6014 -2.4343 -0.4164 10 7 6.2336 -1.3785 0.3905 11 6 5.7327 -0.0613 -0.0158 12 1 6.0848 0.1632 -1.0227 13 6 6.2505 0.9844 0.9377 14 1 5.5579 1.5868 1.5066 15 6 7.6087 1.1723 1.0835 16 7 8.4522 0.4385 0.3910 17 14 8.2506 2.4691 2.2650 18 1 7.7811 2.1618 3.6399 19 1 9.7354 2.4714 2.2383 20 1 7.7456 3.8045 1.8564 21 1 -0.3633 -0.0001 -1.0276 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 1.6543 2.1383 0.0009 25 1 4.1381 2.1059 -0.0014 26 1 4.0862 -2.9817 1.0105 27 1 3.6165 -3.2173 -0.6892 28 1 6.1141 -3.3812 -0.2466 29 1 5.6558 -2.1730 -1.4732 30 1 7.2391 -1.4212 0.3180 31 1 9.4076 0.5708 0.4934 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259766049.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:46 Heat of formation + Delta-G solvation = 25.092861 kcal Electronic energy + Delta-G solvation = -14563.311134 eV Core-core repulsion = 12229.794612 eV Total energy + Delta-G solvation = -2333.516522 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.88817 -36.34848 -33.32523 -32.09251 -31.52365 -29.14514 -27.66209 -25.31169 -22.97932 -22.19649 -21.16663 -19.00676 -16.71732 -15.89710 -15.41031 -14.80369 -14.45315 -14.01036 -13.82163 -13.30954 -12.99344 -12.43878 -12.29497 -12.11399 -11.94084 -11.67026 -11.15572 -11.05206 -10.83713 -10.80008 -10.29781 -9.89647 -9.47776 -8.95123 -8.74912 -8.56416 -7.87588 -7.00195 -6.19249 -4.22297 1.82549 2.03701 3.26393 3.31222 3.34633 4.31039 4.45300 4.74645 5.05975 5.26987 5.47653 5.60587 5.69894 5.78898 5.82428 5.89464 5.98008 6.09548 6.18641 6.22187 6.44943 6.51806 6.56133 6.69746 6.87419 7.12105 7.18689 7.44520 7.77427 8.04688 8.48501 8.66871 8.85352 8.96563 9.45642 10.91566 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.033462 B = 0.009882 C = 0.007951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.581665 B = 2832.838672 C = 3520.638649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.099 3.901 3 C -0.186 4.186 4 C -0.065 4.065 5 C -0.087 4.087 6 C 0.125 3.875 7 N -0.497 5.497 8 C -0.055 4.055 9 C 0.047 3.953 10 N -0.676 5.676 11 C 0.249 3.751 12 H 0.014 0.986 13 C -0.502 4.502 14 H 0.063 0.937 15 C 0.069 3.931 16 N -0.899 5.899 17 Si 0.902 3.098 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.277 1.277 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.123 0.877 25 H 0.138 0.862 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.019 0.981 30 H 0.366 0.634 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.513 -1.026 -1.758 8.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.041 4.041 3 C -0.206 4.206 4 C -0.091 4.091 5 C -0.090 4.090 6 C -0.010 4.010 7 N -0.207 5.207 8 C -0.093 4.093 9 C -0.084 4.084 10 N -0.312 5.312 11 C 0.140 3.860 12 H 0.031 0.969 13 C -0.541 4.541 14 H 0.081 0.919 15 C -0.133 4.133 16 N -0.538 5.538 17 Si 0.729 3.271 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.202 1.202 21 H 0.086 0.914 22 H 0.088 0.912 23 H 0.086 0.914 24 H 0.141 0.859 25 H 0.156 0.844 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.037 0.963 30 H 0.190 0.810 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.198 -1.898 -1.257 9.475 hybrid contribution 1.349 1.642 -0.191 2.133 sum -7.849 -0.256 -1.448 7.985 Atomic orbital electron populations 1.20568 0.89858 1.02543 1.02111 1.20931 0.96191 0.88691 0.98250 1.21816 0.95124 0.98520 1.05181 1.21646 0.93351 0.99009 0.95057 1.21103 0.99249 0.92417 0.96203 1.20973 0.88257 0.95622 0.96189 1.67215 1.09911 1.29562 1.14029 1.20362 0.94863 0.91922 1.02158 1.21925 0.94166 0.97051 0.95220 1.61112 1.13531 1.02481 1.54098 1.17934 0.84222 0.88265 0.95532 0.96902 1.21070 0.91661 1.16766 1.24576 0.91896 1.24984 0.96783 0.96081 0.95424 1.69645 1.02840 1.40307 1.41002 0.86495 0.77582 0.81474 0.81500 1.20058 1.21189 1.20231 0.91371 0.91207 0.91447 0.85922 0.84396 0.90166 0.91192 0.91712 0.96332 0.81006 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.22 10.17 36.01 0.37 -0.86 16 2 C 0.10 1.77 6.78 -82.68 -0.56 1.21 16 3 C -0.19 -3.31 9.76 -39.49 -0.39 -3.69 16 4 C -0.06 -1.33 8.84 -39.20 -0.35 -1.68 16 5 C -0.09 -2.00 5.47 -104.61 -0.57 -2.57 16 6 C 0.13 2.69 6.67 -82.43 -0.55 2.15 16 7 N -0.50 -10.05 10.13 -5.73 -0.06 -10.11 16 8 C -0.05 -1.04 6.18 -27.89 -0.17 -1.22 16 9 C 0.05 0.94 6.57 -3.75 -0.02 0.92 16 10 N -0.68 -16.24 6.44 -109.35 -0.70 -16.94 16 11 C 0.25 6.26 2.44 -70.26 -0.17 6.09 16 12 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 13 C -0.50 -13.42 8.01 -34.44 -0.28 -13.70 16 14 H 0.06 1.67 6.77 -52.49 -0.36 1.31 16 15 C 0.07 1.85 5.38 -17.82 -0.10 1.75 16 16 N -0.90 -24.39 11.53 55.43 0.64 -23.75 16 17 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 22 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 23 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 24 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 25 H 0.14 2.77 7.19 -52.49 -0.38 2.40 16 26 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.02 0.37 8.05 -51.93 -0.42 -0.04 16 30 H 0.37 9.26 6.88 -39.29 -0.27 8.99 16 31 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 257.40 15.07 3.88 3.88 Total: -1.00 -28.53 257.40 -7.99 -36.52 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -3.93 Total: 6.27 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -2.79 Total: -11.59 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: -0.12 Total: -50.80 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.53 -7.99 -36.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259766049.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.614 kcal (2) G-P(sol) polarization free energy of solvation -28.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds