Wall clock time and date at job start Mon Mar 30 2020 02:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38233 * 119.66083 * 2 1 4 4 C 1.38488 * 118.93688 * 180.08472 * 3 2 1 5 5 C 1.39009 * 118.70326 * 0.29303 * 4 3 2 6 6 C 1.37780 * 119.21534 * 359.26499 * 5 4 3 7 7 N 1.31621 * 119.66064 * 179.97438 * 2 1 3 8 8 C 1.50823 * 121.41108 * 180.66354 * 6 5 4 9 9 C 1.52872 * 109.95244 * 343.08170 * 8 6 5 10 10 N 1.47157 * 108.57237 * 50.62297 * 9 8 6 11 11 C 1.46664 * 110.22316 * 288.79621 * 10 9 8 12 12 H 1.09002 * 109.30494 * 292.17630 * 11 10 9 13 13 C 1.50698 * 109.30227 * 172.58806 * 11 10 9 14 14 H 1.08000 * 120.00283 * 239.99526 * 13 11 10 15 15 C 1.37885 * 119.99695 * 60.00010 * 13 11 10 16 16 N 1.31509 * 120.00218 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 119.99611 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46825 * 60.00255 * 17 15 13 19 19 H 1.48504 * 109.46782 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47618 * 300.00191 * 17 15 13 21 21 H 1.08995 * 109.47044 * 90.00748 * 1 2 3 22 22 H 1.08998 * 109.46936 * 210.00368 * 1 2 3 23 23 H 1.08999 * 109.47125 * 330.00033 * 1 2 3 24 24 H 1.07996 * 120.53301 * 0.05631 * 3 2 1 25 25 H 1.08002 * 120.64493 * 180.02562 * 4 3 2 26 26 H 1.09003 * 109.39108 * 103.22785 * 8 6 5 27 27 H 1.08999 * 109.38957 * 223.02859 * 8 6 5 28 28 H 1.09002 * 109.61773 * 170.34931 * 9 8 6 29 29 H 1.09001 * 109.61905 * 290.71356 * 9 8 6 30 30 H 1.00904 * 111.00065 * 165.39185 * 10 9 8 31 31 H 0.96995 * 120.00090 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1911 1.2012 0.0000 4 6 3.5759 1.1837 -0.0018 5 6 4.2280 -0.0439 -0.0098 6 6 3.4817 -1.2020 -0.0002 7 7 2.1584 -1.1437 0.0005 8 6 4.1378 -2.5600 0.0067 9 6 5.6014 -2.4343 -0.4164 10 7 6.2336 -1.3785 0.3905 11 6 5.7327 -0.0613 -0.0158 12 1 6.0848 0.1632 -1.0227 13 6 6.2505 0.9844 0.9377 14 1 5.5579 1.5868 1.5066 15 6 7.6087 1.1723 1.0835 16 7 8.4522 0.4385 0.3910 17 14 8.2506 2.4691 2.2650 18 1 7.7811 2.1618 3.6399 19 1 9.7354 2.4714 2.2383 20 1 7.7456 3.8045 1.8564 21 1 -0.3633 -0.0001 -1.0276 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 1.6543 2.1383 0.0009 25 1 4.1381 2.1059 -0.0014 26 1 4.0862 -2.9817 1.0105 27 1 3.6165 -3.2173 -0.6892 28 1 6.1141 -3.3812 -0.2466 29 1 5.6558 -2.1730 -1.4732 30 1 7.2391 -1.4212 0.3180 31 1 9.4076 0.5708 0.4934 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259766049.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:46 Heat of formation + Delta-G solvation = 6.185827 kcal Electronic energy + Delta-G solvation = -14564.131004 eV Core-core repulsion = 12229.794612 eV Total energy + Delta-G solvation = -2334.336393 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.43561 -38.02860 -35.11087 -33.75414 -33.07504 -30.83689 -29.09402 -27.15990 -24.55712 -23.82249 -22.82889 -20.60284 -18.61658 -17.65466 -17.04982 -16.34688 -16.22366 -15.56806 -15.29195 -15.03290 -14.62854 -14.03497 -13.75398 -13.69181 -13.31810 -12.99169 -12.83451 -12.74692 -12.58255 -12.37736 -12.10929 -11.63004 -11.32905 -10.70750 -10.50493 -10.21050 -9.43478 -8.88929 -8.20519 -6.31308 0.30622 0.47168 1.42293 1.44652 1.51846 2.40492 2.89888 3.06787 3.35159 3.86774 3.90537 4.04023 4.22523 4.32152 4.44461 4.52768 4.65243 4.76715 4.84157 4.87258 4.93058 4.94434 5.11490 5.20339 5.25806 5.37892 5.53380 5.71083 5.92780 6.14334 6.53685 6.87159 6.99573 7.17343 7.39995 8.88927 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.033462 B = 0.009882 C = 0.007951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.581665 B = 2832.838672 C = 3520.638649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.099 3.901 3 C -0.178 4.178 4 C -0.078 4.078 5 C -0.125 4.125 6 C 0.110 3.890 7 N -0.508 5.508 8 C -0.050 4.050 9 C 0.048 3.952 10 N -0.687 5.687 11 C 0.254 3.746 12 H -0.027 1.027 13 C -0.521 4.521 14 H 0.058 0.942 15 C 0.024 3.976 16 N -0.921 5.921 17 Si 0.964 3.036 18 H -0.276 1.276 19 H -0.281 1.281 20 H -0.269 1.269 21 H 0.088 0.912 22 H 0.072 0.928 23 H 0.095 0.905 24 H 0.164 0.836 25 H 0.132 0.868 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.012 0.988 30 H 0.354 0.646 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.500 -0.651 -1.275 10.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C -0.198 4.198 4 C -0.104 4.104 5 C -0.128 4.128 6 C -0.025 4.025 7 N -0.219 5.219 8 C -0.088 4.088 9 C -0.082 4.082 10 N -0.322 5.322 11 C 0.146 3.854 12 H -0.010 1.010 13 C -0.559 4.559 14 H 0.076 0.924 15 C -0.176 4.176 16 N -0.560 5.560 17 Si 0.789 3.211 18 H -0.201 1.201 19 H -0.207 1.207 20 H -0.194 1.194 21 H 0.106 0.894 22 H 0.091 0.909 23 H 0.114 0.886 24 H 0.181 0.819 25 H 0.150 0.850 26 H 0.101 0.899 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.030 0.970 30 H 0.176 0.824 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.201 -1.531 -0.780 11.332 hybrid contribution 1.861 1.528 -0.382 2.438 sum -9.340 -0.002 -1.162 9.412 Atomic orbital electron populations 1.20705 0.85972 1.04165 1.03840 1.21847 0.98668 0.88041 0.95541 1.22206 0.93783 1.00451 1.03342 1.21762 0.95024 0.98102 0.95491 1.21027 0.97970 0.94190 0.99573 1.21230 0.89048 0.95945 0.96290 1.67345 1.09037 1.30779 1.14700 1.20371 0.94011 0.91529 1.02894 1.22037 0.95035 0.96855 0.94300 1.61066 1.12826 1.03076 1.55189 1.17700 0.86158 0.88585 0.92987 1.01026 1.21321 0.92079 1.17611 1.24909 0.92383 1.25737 0.96953 0.97989 0.96877 1.69756 1.02961 1.41359 1.41960 0.85525 0.77062 0.79316 0.79179 1.20134 1.20657 1.19382 0.89393 0.90873 0.88607 0.81887 0.84975 0.89901 0.88724 0.89054 0.96992 0.82429 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.96 10.17 71.24 0.72 -1.23 16 2 C 0.10 3.26 6.78 42.59 0.29 3.55 16 3 C -0.18 -5.89 9.76 22.33 0.22 -5.67 16 4 C -0.08 -3.20 8.84 22.51 0.20 -3.00 16 5 C -0.13 -5.84 5.47 -19.86 -0.11 -5.94 16 6 C 0.11 4.68 6.67 42.39 0.28 4.97 16 7 N -0.51 -19.66 10.13 -172.04 -1.74 -21.40 16 8 C -0.05 -1.87 6.18 29.84 0.18 -1.69 16 9 C 0.05 1.93 6.57 86.21 0.57 2.49 16 10 N -0.69 -33.99 6.44 -499.88 -3.22 -37.21 16 11 C 0.25 13.35 2.44 43.40 0.11 13.46 16 12 H -0.03 -1.59 8.14 -2.39 -0.02 -1.61 16 13 C -0.52 -28.69 8.01 25.60 0.20 -28.49 16 14 H 0.06 3.16 6.77 -2.91 -0.02 3.14 16 15 C 0.02 1.31 5.38 84.66 0.46 1.77 16 16 N -0.92 -51.29 11.53 21.45 0.25 -51.05 16 17 Si 0.96 42.99 29.54 68.60 2.03 45.01 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 21 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.10 1.59 8.08 -2.39 -0.02 1.57 16 24 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 25 H 0.13 5.44 7.19 -2.91 -0.02 5.41 16 26 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 27 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 28 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 29 H 0.01 0.49 8.05 -2.39 -0.02 0.47 16 30 H 0.35 18.58 6.88 -89.69 -0.62 17.97 16 31 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -62.67 257.40 0.95 -61.72 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.51 Total: 22.71 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 3.12 Total: -19.78 kcal Atomic # 7 Polarization: -104.95 SS G_CDS: -4.72 Total: -109.66 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -62.67 0.95 -61.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259766049.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.909 kcal (2) G-P(sol) polarization free energy of solvation -62.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds