Wall clock time and date at job start Mon Mar 30 2020 03:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31815 * 119.16727 * 2 1 4 4 C 1.32191 * 120.64460 * 179.87392 * 3 2 1 5 5 C 1.39022 * 119.27404 * 0.02769 * 4 3 2 6 6 C 1.37764 * 118.46043 * 0.12297 * 5 4 3 7 7 N 1.31608 * 119.16763 * 179.97438 * 2 1 3 8 8 C 1.50447 * 122.58678 * 179.71447 * 6 5 4 9 9 H 1.08997 * 109.15498 * 257.35784 * 8 6 5 10 10 C 1.50695 * 109.30976 * 137.84651 * 8 6 5 11 11 H 1.08004 * 120.00546 * 239.29151 * 10 8 6 12 12 C 1.37885 * 119.99721 * 59.01402 * 10 8 6 13 13 N 1.31514 * 120.00035 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99853 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47228 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46793 * 120.00131 * 14 12 10 17 17 H 1.48500 * 109.47000 * 240.00224 * 14 12 10 18 18 C 1.52814 * 110.43720 * 17.55272 * 8 6 5 19 19 C 1.53314 * 108.50263 * 308.96722 * 18 8 6 20 20 C 1.50336 * 118.73103 * 180.18193 * 5 4 3 21 21 H 1.08998 * 109.46990 * 89.99706 * 1 2 3 22 22 H 1.09002 * 109.47187 * 209.99911 * 1 2 3 23 23 H 1.08994 * 109.46880 * 329.99360 * 1 2 3 24 24 H 1.07999 * 120.36186 * 180.02562 * 4 3 2 25 25 H 0.97000 * 119.99706 * 179.97438 * 13 12 10 26 26 H 1.09002 * 109.63436 * 68.67274 * 18 8 6 27 27 H 1.09003 * 109.62961 * 189.06099 * 18 8 6 28 28 H 1.09004 * 109.63369 * 189.53252 * 19 18 8 29 29 H 1.08995 * 109.63474 * 309.93161 * 19 18 8 30 30 H 1.08998 * 109.31165 * 76.98671 * 20 5 4 31 31 H 1.09002 * 109.14756 * 317.48209 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1494 1.1510 0.0000 4 6 3.4709 1.1851 0.0025 5 6 4.1817 -0.0096 0.0046 6 6 3.4766 -1.1931 0.0013 7 7 2.1484 -1.1492 0.0005 8 6 4.1508 -2.5381 -0.0032 9 1 4.1091 -2.9557 -1.0091 10 6 3.4321 -3.4589 0.9489 11 1 3.9639 -3.8991 1.7795 12 6 2.0941 -3.7351 0.7628 13 7 1.4452 -3.1952 -0.2457 14 14 1.2033 -4.8772 1.9425 15 1 2.1504 -5.3498 2.9840 16 1 0.0830 -4.1465 2.5877 17 1 0.6682 -6.0427 1.1939 18 6 5.6107 -2.4045 0.4283 19 6 6.2679 -1.3039 -0.4126 20 6 5.6841 0.0434 0.0116 21 1 -0.3633 0.0001 -1.0276 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 3.9926 2.1307 0.0029 25 1 0.5040 -3.3898 -0.3767 26 1 5.6576 -2.1362 1.4838 27 1 6.1280 -3.3504 0.2677 28 1 7.3445 -1.3066 -0.2425 29 1 6.0636 -1.4789 -1.4689 30 1 6.0316 0.2865 1.0157 31 1 6.0179 0.8152 -0.6820 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259787461.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:26 Heat of formation + Delta-G solvation = 55.511594 kcal Electronic energy + Delta-G solvation = -14997.417207 eV Core-core repulsion = 12665.219740 eV Total energy + Delta-G solvation = -2332.197467 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.15791 -36.40715 -33.67218 -31.68292 -31.22808 -29.70525 -27.26092 -24.67862 -23.46143 -21.84395 -21.22587 -18.75240 -16.69769 -16.31225 -15.13189 -14.53859 -14.31370 -13.96615 -13.34072 -12.95841 -12.73558 -12.27489 -12.04519 -11.91964 -11.52017 -11.31927 -11.15085 -10.84331 -10.52278 -10.32440 -10.07502 -9.89019 -9.73732 -9.04532 -8.76918 -8.34683 -7.97271 -7.44040 -5.71536 -3.83612 2.01215 2.35465 3.35209 3.42978 3.46695 4.51333 4.92882 4.98484 5.24549 5.41751 5.47581 5.56204 5.61222 5.68542 5.97703 6.20783 6.23156 6.26577 6.28933 6.38697 6.45561 6.52915 6.64431 6.74025 6.85732 7.10532 7.14397 7.59115 7.68311 8.06479 8.22266 8.41382 9.02152 9.54324 9.72339 11.19140 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.024662 B = 0.015159 C = 0.010001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.090398 B = 1846.662428 C = 2799.038705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.265 3.735 3 N -0.552 5.552 4 C 0.121 3.879 5 C -0.224 4.224 6 C 0.214 3.786 7 N -0.386 5.386 8 C 0.086 3.914 9 H 0.046 0.954 10 C -0.545 4.545 11 H 0.056 0.944 12 C 0.075 3.925 13 N -0.799 5.799 14 Si 0.882 3.118 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.286 1.286 18 C -0.106 4.106 19 C -0.122 4.122 20 C -0.059 4.059 21 H 0.070 0.930 22 H 0.078 0.922 23 H 0.064 0.936 24 H 0.145 0.855 25 H 0.251 0.749 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.113 5.342 -0.515 6.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.002 4.002 3 N -0.268 5.268 4 C -0.047 4.047 5 C -0.229 4.229 6 C 0.069 3.931 7 N -0.098 5.098 8 C 0.068 3.932 9 H 0.063 0.937 10 C -0.583 4.583 11 H 0.074 0.926 12 C -0.134 4.134 13 N -0.431 5.431 14 Si 0.711 3.289 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.212 1.212 18 C -0.144 4.144 19 C -0.159 4.159 20 C -0.097 4.097 21 H 0.088 0.912 22 H 0.097 0.903 23 H 0.083 0.917 24 H 0.162 0.838 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.871 5.329 -0.634 6.086 hybrid contribution 0.289 -0.340 0.665 0.800 sum 3.160 4.989 0.031 5.906 Atomic orbital electron populations 1.20278 0.87683 1.02341 1.02334 1.23677 0.98228 0.84888 0.93447 1.67995 1.09594 1.32159 1.17035 1.22771 0.90041 0.97100 0.94750 1.21260 0.97724 0.95893 1.08072 1.23008 0.89592 0.95508 0.85037 1.70235 1.08496 1.23596 1.07453 1.17698 0.89160 0.87811 0.98569 0.93650 1.20764 0.95190 1.29301 1.13021 0.92554 1.24871 0.97427 0.95459 0.95605 1.70223 1.08720 1.36325 1.27833 0.86709 0.79834 0.80937 0.81452 1.20080 1.21283 1.21218 1.21609 0.97168 0.96869 0.98773 1.21621 0.98624 0.95245 1.00422 1.20137 0.90715 0.97990 1.00852 0.91168 0.90291 0.91686 0.83790 0.93811 0.92744 0.92254 0.92591 0.92208 0.91577 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.31 10.32 36.01 0.37 -0.94 16 2 C 0.26 6.16 7.64 -157.34 -1.20 4.96 16 3 N -0.55 -12.04 10.34 -10.68 -0.11 -12.15 16 4 C 0.12 2.39 10.93 -17.11 -0.19 2.20 16 5 C -0.22 -4.64 5.73 -104.68 -0.60 -5.24 16 6 C 0.21 5.24 6.17 -82.43 -0.51 4.73 16 7 N -0.39 -9.96 5.67 -7.19 -0.04 -10.00 16 8 C 0.09 2.13 2.33 -93.14 -0.22 1.91 16 9 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 10 C -0.55 -14.82 8.52 -34.44 -0.29 -15.11 16 11 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 12 C 0.08 2.05 4.91 -17.82 -0.09 1.97 16 13 N -0.80 -22.11 9.83 55.43 0.54 -21.56 16 14 Si 0.88 21.24 29.54 -169.99 -5.02 16.22 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 C -0.11 -2.11 5.19 -26.66 -0.14 -2.25 16 19 C -0.12 -2.00 5.97 -26.65 -0.16 -2.16 16 20 C -0.06 -0.96 5.72 -28.14 -0.16 -1.12 16 21 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 22 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 23 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.14 2.26 8.06 -52.49 -0.42 1.84 16 25 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 26 H 0.05 1.10 8.08 -51.93 -0.42 0.68 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 255.56 15.07 3.85 3.85 Total: -1.00 -29.66 255.56 -8.15 -37.81 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: -4.19 Total: -3.10 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -3.18 Total: -11.06 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.39 Total: -43.72 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.66 -8.15 -37.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259787461.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.321 kcal (2) G-P(sol) polarization free energy of solvation -29.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds