Wall clock time and date at job start Mon Mar 30 2020 03:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31815 * 119.16727 * 2 1 4 4 C 1.32191 * 120.64460 * 179.87392 * 3 2 1 5 5 C 1.39022 * 119.27404 * 0.02769 * 4 3 2 6 6 C 1.37764 * 118.46043 * 0.12297 * 5 4 3 7 7 N 1.31608 * 119.16763 * 179.97438 * 2 1 3 8 8 C 1.50447 * 122.58678 * 179.71447 * 6 5 4 9 9 H 1.08997 * 109.15498 * 257.35784 * 8 6 5 10 10 C 1.50695 * 109.30976 * 137.84651 * 8 6 5 11 11 H 1.08004 * 120.00546 * 239.29151 * 10 8 6 12 12 C 1.37885 * 119.99721 * 59.01402 * 10 8 6 13 13 N 1.31514 * 120.00035 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99853 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47228 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46793 * 120.00131 * 14 12 10 17 17 H 1.48500 * 109.47000 * 240.00224 * 14 12 10 18 18 C 1.52814 * 110.43720 * 17.55272 * 8 6 5 19 19 C 1.53314 * 108.50263 * 308.96722 * 18 8 6 20 20 C 1.50336 * 118.73103 * 180.18193 * 5 4 3 21 21 H 1.08998 * 109.46990 * 89.99706 * 1 2 3 22 22 H 1.09002 * 109.47187 * 209.99911 * 1 2 3 23 23 H 1.08994 * 109.46880 * 329.99360 * 1 2 3 24 24 H 1.07999 * 120.36186 * 180.02562 * 4 3 2 25 25 H 0.97000 * 119.99706 * 179.97438 * 13 12 10 26 26 H 1.09002 * 109.63436 * 68.67274 * 18 8 6 27 27 H 1.09003 * 109.62961 * 189.06099 * 18 8 6 28 28 H 1.09004 * 109.63369 * 189.53252 * 19 18 8 29 29 H 1.08995 * 109.63474 * 309.93161 * 19 18 8 30 30 H 1.08998 * 109.31165 * 76.98671 * 20 5 4 31 31 H 1.09002 * 109.14756 * 317.48209 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1494 1.1510 0.0000 4 6 3.4709 1.1851 0.0025 5 6 4.1817 -0.0096 0.0046 6 6 3.4766 -1.1931 0.0013 7 7 2.1484 -1.1492 0.0005 8 6 4.1508 -2.5381 -0.0032 9 1 4.1091 -2.9557 -1.0091 10 6 3.4321 -3.4589 0.9489 11 1 3.9639 -3.8991 1.7795 12 6 2.0941 -3.7351 0.7628 13 7 1.4452 -3.1952 -0.2457 14 14 1.2033 -4.8772 1.9425 15 1 2.1504 -5.3498 2.9840 16 1 0.0830 -4.1465 2.5877 17 1 0.6682 -6.0427 1.1939 18 6 5.6107 -2.4045 0.4283 19 6 6.2679 -1.3039 -0.4126 20 6 5.6841 0.0434 0.0116 21 1 -0.3633 0.0001 -1.0276 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 3.9926 2.1307 0.0029 25 1 0.5040 -3.3898 -0.3767 26 1 5.6576 -2.1362 1.4838 27 1 6.1280 -3.3504 0.2677 28 1 7.3445 -1.3066 -0.2425 29 1 6.0636 -1.4789 -1.4689 30 1 6.0316 0.2865 1.0157 31 1 6.0179 0.8152 -0.6820 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259787461.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:26 Heat of formation + Delta-G solvation = 38.904912 kcal Electronic energy + Delta-G solvation = -14998.137327 eV Core-core repulsion = 12665.219740 eV Total energy + Delta-G solvation = -2332.917587 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.81807 -37.99836 -35.44195 -33.54595 -32.81910 -31.39995 -28.87498 -26.51904 -25.11953 -23.41274 -22.91922 -20.33331 -18.49745 -18.19609 -16.75836 -16.41977 -15.97182 -15.53482 -14.81885 -14.54344 -14.48823 -13.98962 -13.60691 -13.46150 -13.06873 -13.03540 -12.83535 -12.64155 -12.36611 -11.85638 -11.78384 -11.65623 -11.46500 -10.74165 -10.59952 -10.32267 -9.58150 -9.25152 -7.75948 -5.93559 0.35614 0.67484 1.41100 1.43831 1.52352 2.51008 3.21237 3.38727 3.46641 3.69955 4.03200 4.06300 4.15862 4.27619 4.50995 4.71259 4.74873 4.77324 4.87001 4.93489 4.98215 5.10744 5.12323 5.29290 5.32392 5.49444 5.53597 5.71735 5.86795 6.10991 6.36434 6.61202 6.96613 7.62780 7.83690 9.12398 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.024662 B = 0.015159 C = 0.010001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.090398 B = 1846.662428 C = 2799.038705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.241 3.759 3 N -0.554 5.554 4 C 0.121 3.879 5 C -0.220 4.220 6 C 0.175 3.825 7 N -0.427 5.427 8 C 0.083 3.917 9 H 0.009 0.991 10 C -0.570 4.570 11 H 0.046 0.954 12 C 0.035 3.965 13 N -0.813 5.813 14 Si 0.936 3.064 15 H -0.275 1.275 16 H -0.288 1.288 17 H -0.280 1.280 18 C -0.101 4.101 19 C -0.114 4.114 20 C -0.057 4.057 21 H 0.080 0.920 22 H 0.063 0.937 23 H 0.088 0.912 24 H 0.193 0.807 25 H 0.248 0.752 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.052 0.948 30 H 0.086 0.914 31 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.464 7.060 -0.223 8.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.027 4.027 3 N -0.270 5.270 4 C -0.046 4.046 5 C -0.225 4.225 6 C 0.031 3.969 7 N -0.140 5.140 8 C 0.064 3.936 9 H 0.027 0.973 10 C -0.607 4.607 11 H 0.064 0.936 12 C -0.173 4.173 13 N -0.446 5.446 14 Si 0.763 3.237 15 H -0.200 1.200 16 H -0.214 1.214 17 H -0.206 1.206 18 C -0.139 4.139 19 C -0.152 4.152 20 C -0.095 4.095 21 H 0.099 0.901 22 H 0.082 0.918 23 H 0.106 0.894 24 H 0.210 0.790 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.234 7.042 -0.345 8.224 hybrid contribution -0.104 -0.839 0.553 1.010 sum 4.130 6.203 0.208 7.456 Atomic orbital electron populations 1.20289 0.85886 1.02664 1.03119 1.24163 0.99652 0.84817 0.94043 1.68082 1.10826 1.31238 1.16847 1.23564 0.89484 0.98690 0.92905 1.21664 1.00281 0.94651 1.05863 1.22955 0.89883 0.96697 0.87384 1.69994 1.09789 1.25449 1.08778 1.17636 0.92049 0.87907 0.96021 0.97291 1.21046 0.95790 1.30485 1.13416 0.93561 1.25471 0.98156 0.96648 0.97000 1.70396 1.08547 1.36863 1.28760 0.85876 0.78583 0.79430 0.79810 1.20011 1.21438 1.20629 1.21516 0.94542 0.98768 0.99056 1.21586 1.00551 0.93905 0.99123 1.20288 0.87379 0.98817 1.03006 0.90108 0.91800 0.89362 0.78978 0.94116 0.93180 0.91957 0.88698 0.92907 0.89580 0.88300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.36 10.32 71.24 0.74 -1.62 16 2 C 0.24 11.16 7.64 138.80 1.06 12.22 16 3 N -0.55 -23.19 10.34 -187.72 -1.94 -25.13 16 4 C 0.12 4.41 10.93 84.83 0.93 5.34 16 5 C -0.22 -8.63 5.73 -19.90 -0.11 -8.74 16 6 C 0.18 8.65 6.17 42.21 0.26 8.91 16 7 N -0.43 -22.49 5.67 -176.65 -1.00 -23.49 16 8 C 0.08 4.17 2.33 -12.43 -0.03 4.14 16 9 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 10 C -0.57 -31.95 8.52 25.60 0.22 -31.73 16 11 H 0.05 2.59 7.74 -2.91 -0.02 2.57 16 12 C 0.03 1.95 4.91 84.66 0.42 2.37 16 13 N -0.81 -46.53 9.83 21.45 0.21 -46.32 16 14 Si 0.94 44.67 29.54 68.60 2.03 46.70 16 15 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 16 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 17 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 18 C -0.10 -3.94 5.19 30.64 0.16 -3.78 16 19 C -0.11 -3.42 5.97 30.64 0.18 -3.24 16 20 C -0.06 -1.63 5.72 29.68 0.17 -1.46 16 21 H 0.08 2.87 8.14 -2.39 -0.02 2.86 16 22 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 23 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 24 H 0.19 5.01 8.06 -2.91 -0.02 4.98 16 25 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 26 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 27 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.05 1.66 8.10 -2.39 -0.02 1.64 16 30 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -66.18 255.56 4.39 -61.78 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: 1.11 Total: 4.05 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 3.99 Total: -17.60 kcal Atomic # 7 Polarization: -92.21 SS G_CDS: -2.73 Total: -94.94 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -66.18 4.39 -61.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259787461.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.690 kcal (2) G-P(sol) polarization free energy of solvation -66.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds