Wall clock time and date at job start Mon Mar 30 2020 02:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00217 * 2 1 4 4 H 1.08997 * 110.72647 * 26.59393 * 3 2 1 5 5 C 1.54340 * 110.99446 * 263.06680 * 3 2 1 6 6 C 1.51367 * 105.17518 * 215.35023 * 5 3 2 7 7 C 1.38498 * 130.39583 * 197.18684 * 6 5 3 8 8 C 1.38101 * 120.21560 * 180.25436 * 7 6 5 9 9 C 1.38260 * 119.93595 * 359.48528 * 8 7 6 10 10 C 1.38104 * 119.92885 * 0.51513 * 9 8 7 11 11 C 1.38216 * 109.75563 * 17.18499 * 6 5 3 12 12 C 1.51368 * 109.76146 * 0.02562 * 11 6 5 13 13 H 1.08994 * 110.30450 * 223.78411 * 12 11 6 14 14 C 1.50702 * 110.30389 * 101.72679 * 12 11 6 15 15 H 1.07999 * 119.99912 * 241.45221 * 14 12 11 16 16 C 1.37882 * 119.99853 * 61.45604 * 14 12 11 17 17 N 1.31512 * 119.99641 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 119.99917 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47345 * 0.02562 * 18 16 14 20 20 H 1.48511 * 109.46872 * 120.00030 * 18 16 14 21 21 H 1.48496 * 109.47298 * 240.00046 * 18 16 14 22 22 H 1.09000 * 109.47448 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47183 * 300.00105 * 1 2 3 24 24 H 1.09005 * 109.47040 * 59.99925 * 1 2 3 25 25 H 1.09008 * 110.30302 * 96.42305 * 5 3 2 26 26 H 1.09007 * 110.30412 * 334.27597 * 5 3 2 27 27 H 1.08002 * 119.88925 * 359.96989 * 7 6 5 28 28 H 1.08000 * 120.03724 * 179.72355 * 8 7 6 29 29 H 1.07997 * 120.03283 * 180.23381 * 9 8 7 30 30 H 1.08004 * 119.88713 * 179.72625 * 10 9 8 31 31 H 0.96999 * 119.99652 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3344 2.0286 0.4564 5 6 2.3941 1.7398 -1.4304 6 6 3.6646 2.5473 -1.2718 7 6 4.2790 3.4338 -2.1406 8 6 5.4548 4.0605 -1.7775 9 6 6.0156 3.8110 -0.5386 10 6 5.4044 2.9273 0.3290 11 6 4.2280 2.2937 -0.0354 12 6 3.3751 1.2981 0.7212 13 1 3.2577 1.6118 1.7584 14 6 3.9933 -0.0748 0.6578 15 1 3.4553 -0.8884 0.1942 16 6 5.2459 -0.2921 1.1917 17 7 5.9007 0.6986 1.7568 18 14 6.0119 -1.9940 1.1138 19 1 5.0781 -2.9265 0.4328 20 1 7.2867 -1.9286 0.3547 21 1 6.2803 -2.4796 2.4912 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.6058 2.3561 -1.8629 26 1 2.5772 0.8654 -2.0550 27 1 3.8395 3.6320 -3.1071 28 1 5.9338 4.7478 -2.4590 29 1 6.9330 4.3031 -0.2515 30 1 5.8454 2.7295 1.2949 31 1 6.7820 0.5458 2.1321 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259799685.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:36 Heat of formation + Delta-G solvation = -18.407497 kcal Electronic energy + Delta-G solvation = -14774.213806 eV Core-core repulsion = 12406.518215 eV Total energy + Delta-G solvation = -2367.695591 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.21608 -36.93480 -33.99614 -32.39620 -29.93989 -27.88579 -26.96553 -25.70490 -23.81602 -21.34570 -19.88256 -19.58850 -16.83205 -15.30068 -15.20596 -14.97644 -14.65468 -14.17483 -13.60603 -13.43699 -12.68255 -12.32394 -12.16160 -11.99298 -11.43465 -11.20153 -10.93917 -10.92490 -10.72352 -10.34466 -10.12358 -9.69465 -9.61873 -9.13777 -8.68499 -8.40953 -7.68407 -7.33818 -5.96099 -4.01523 2.42007 2.55791 3.33373 3.40924 3.47151 4.45709 4.56750 4.90882 5.29434 5.38542 5.67433 5.72530 5.81690 5.87059 5.90748 5.99410 6.04288 6.20503 6.32775 6.54429 6.60285 6.73439 6.97135 7.06401 7.27844 7.43280 7.54864 7.66968 7.92633 8.03195 8.08731 8.22509 8.42452 9.05329 9.61586 11.06199 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.018845 B = 0.016120 C = 0.009676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.456031 B = 1736.508364 C = 2893.180749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.090 3.910 4 H 0.052 0.948 5 C -0.088 4.088 6 C -0.121 4.121 7 C -0.127 4.127 8 C -0.150 4.150 9 C -0.145 4.145 10 C -0.075 4.075 11 C -0.029 4.029 12 C 0.077 3.923 13 H 0.039 0.961 14 C -0.482 4.482 15 H 0.075 0.925 16 C 0.057 3.943 17 N -0.889 5.889 18 Si 0.896 3.104 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.285 1.285 22 H 0.076 0.924 23 H 0.033 0.967 24 H 0.030 0.970 25 H 0.052 0.948 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.151 0.849 31 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.289 3.708 -3.826 7.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.271 6.271 3 C 0.032 3.968 4 H 0.070 0.930 5 C -0.125 4.125 6 C -0.121 4.121 7 C -0.145 4.145 8 C -0.168 4.168 9 C -0.163 4.163 10 C -0.094 4.094 11 C -0.030 4.030 12 C 0.058 3.942 13 H 0.056 0.944 14 C -0.520 4.520 15 H 0.093 0.907 16 C -0.143 4.143 17 N -0.528 5.528 18 Si 0.724 3.276 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.211 1.211 22 H 0.095 0.905 23 H 0.052 0.948 24 H 0.048 0.952 25 H 0.071 0.929 26 H 0.099 0.901 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.168 0.832 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.016 3.550 -3.731 7.189 hybrid contribution 0.474 -0.632 -0.248 0.828 sum -4.542 2.918 -3.978 6.706 Atomic orbital electron populations 1.22708 0.83777 1.01635 0.98868 1.88139 1.16911 1.27486 1.94593 1.22825 0.96185 0.83119 0.94648 0.92968 1.21343 0.94119 0.98441 0.98622 1.20428 0.97603 0.97998 0.96096 1.20275 0.96644 0.99133 0.98487 1.20690 0.96935 1.02034 0.97113 1.21039 0.99991 1.00328 0.94931 1.21395 0.93825 0.92475 1.01671 1.20954 0.95058 0.92194 0.94787 1.18470 0.87176 0.94371 0.94146 0.94353 1.21011 1.01041 0.93410 1.36540 0.90675 1.24986 0.97102 0.96955 0.95280 1.69814 1.13549 1.30516 1.38937 0.86458 0.79036 0.84544 0.77552 1.19655 1.21244 1.21123 0.90547 0.94821 0.95188 0.92894 0.90140 0.88163 0.87840 0.87705 0.83191 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.85 101.05 1.10 1.52 16 2 O -0.35 -7.45 8.66 -35.23 -0.31 -7.76 16 3 C 0.09 1.91 3.39 -25.31 -0.09 1.83 16 4 H 0.05 1.00 7.82 -51.93 -0.41 0.59 16 5 C -0.09 -1.76 6.51 -26.85 -0.17 -1.94 16 6 C -0.12 -2.66 6.14 -104.21 -0.64 -3.30 16 7 C -0.13 -2.52 10.04 -39.54 -0.40 -2.92 16 8 C -0.15 -2.87 10.05 -39.62 -0.40 -3.27 16 9 C -0.14 -2.99 10.05 -39.62 -0.40 -3.39 16 10 C -0.08 -1.80 8.79 -39.54 -0.35 -2.14 16 11 C -0.03 -0.71 5.13 -104.21 -0.53 -1.25 16 12 C 0.08 1.94 2.79 -91.88 -0.26 1.68 16 13 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 14 C -0.48 -13.32 8.24 -34.44 -0.28 -13.61 16 15 H 0.08 2.13 6.60 -52.49 -0.35 1.78 16 16 C 0.06 1.58 5.32 -17.82 -0.09 1.48 16 17 N -0.89 -24.63 9.67 55.43 0.54 -24.09 16 18 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 22 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.03 0.48 8.11 -51.93 -0.42 0.06 16 24 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 26 H 0.08 1.67 8.10 -51.93 -0.42 1.25 16 27 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 28 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 29 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.15 3.79 6.01 -52.48 -0.32 3.47 16 31 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 258.18 15.07 3.89 3.89 Total: -1.00 -28.95 258.18 -7.42 -36.37 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -4.00 Total: 0.19 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: -2.51 Total: -25.30 kcal Atomic # 7 Polarization: -24.63 SS G_CDS: 0.54 Total: -24.09 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -0.31 Total: -7.76 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.95 -7.42 -36.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799685.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.963 kcal (2) G-P(sol) polarization free energy of solvation -28.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds