Wall clock time and date at job start Mon Mar 30 2020 02:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00217 * 2 1 4 4 H 1.08997 * 110.72647 * 26.59393 * 3 2 1 5 5 C 1.54340 * 110.99446 * 263.06680 * 3 2 1 6 6 C 1.51367 * 105.17518 * 215.35023 * 5 3 2 7 7 C 1.38498 * 130.39583 * 197.18684 * 6 5 3 8 8 C 1.38101 * 120.21560 * 180.25436 * 7 6 5 9 9 C 1.38260 * 119.93595 * 359.48528 * 8 7 6 10 10 C 1.38104 * 119.92885 * 0.51513 * 9 8 7 11 11 C 1.38216 * 109.75563 * 17.18499 * 6 5 3 12 12 C 1.51368 * 109.76146 * 0.02562 * 11 6 5 13 13 H 1.08994 * 110.30450 * 223.78411 * 12 11 6 14 14 C 1.50702 * 110.30389 * 101.72679 * 12 11 6 15 15 H 1.07999 * 119.99912 * 241.45221 * 14 12 11 16 16 C 1.37882 * 119.99853 * 61.45604 * 14 12 11 17 17 N 1.31512 * 119.99641 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 119.99917 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47345 * 0.02562 * 18 16 14 20 20 H 1.48511 * 109.46872 * 120.00030 * 18 16 14 21 21 H 1.48496 * 109.47298 * 240.00046 * 18 16 14 22 22 H 1.09000 * 109.47448 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47183 * 300.00105 * 1 2 3 24 24 H 1.09005 * 109.47040 * 59.99925 * 1 2 3 25 25 H 1.09008 * 110.30302 * 96.42305 * 5 3 2 26 26 H 1.09007 * 110.30412 * 334.27597 * 5 3 2 27 27 H 1.08002 * 119.88925 * 359.96989 * 7 6 5 28 28 H 1.08000 * 120.03724 * 179.72355 * 8 7 6 29 29 H 1.07997 * 120.03283 * 180.23381 * 9 8 7 30 30 H 1.08004 * 119.88713 * 179.72625 * 10 9 8 31 31 H 0.96999 * 119.99652 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3344 2.0286 0.4564 5 6 2.3941 1.7398 -1.4304 6 6 3.6646 2.5473 -1.2718 7 6 4.2790 3.4338 -2.1406 8 6 5.4548 4.0605 -1.7775 9 6 6.0156 3.8110 -0.5386 10 6 5.4044 2.9273 0.3290 11 6 4.2280 2.2937 -0.0354 12 6 3.3751 1.2981 0.7212 13 1 3.2577 1.6118 1.7584 14 6 3.9933 -0.0748 0.6578 15 1 3.4553 -0.8884 0.1942 16 6 5.2459 -0.2921 1.1917 17 7 5.9007 0.6986 1.7568 18 14 6.0119 -1.9940 1.1138 19 1 5.0781 -2.9265 0.4328 20 1 7.2867 -1.9286 0.3547 21 1 6.2803 -2.4796 2.4912 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.6058 2.3561 -1.8629 26 1 2.5772 0.8654 -2.0550 27 1 3.8395 3.6320 -3.1071 28 1 5.9338 4.7478 -2.4590 29 1 6.9330 4.3031 -0.2515 30 1 5.8454 2.7295 1.2949 31 1 6.7820 0.5458 2.1321 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259799685.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:35 Heat of formation + Delta-G solvation = -34.501506 kcal Electronic energy + Delta-G solvation = -14774.911695 eV Core-core repulsion = 12406.518215 eV Total energy + Delta-G solvation = -2368.393479 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.86985 -38.48146 -35.71226 -34.30157 -31.66191 -29.54116 -28.69930 -27.06583 -25.72504 -22.97239 -21.49376 -21.35826 -18.70189 -17.00771 -16.91877 -16.58229 -16.30063 -15.91763 -15.10127 -15.00367 -14.35604 -14.09325 -13.83079 -13.59127 -13.07287 -13.00735 -12.74827 -12.59745 -12.30743 -12.10538 -11.78475 -11.48219 -11.37042 -10.96455 -10.54005 -10.19715 -9.33517 -9.05903 -8.01355 -6.14989 0.77098 0.91702 1.38872 1.40786 1.52747 2.44772 3.08331 3.20924 3.26551 3.79238 4.10680 4.22756 4.38515 4.48934 4.60732 4.62686 4.66904 4.76490 4.88625 4.94621 4.96980 5.09906 5.32399 5.38207 5.50764 5.72593 5.82636 5.85101 6.05502 6.23049 6.35347 6.50642 6.66465 6.95516 7.49939 8.97507 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.018845 B = 0.016120 C = 0.009676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.456031 B = 1736.508364 C = 2893.180749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.387 6.387 3 C 0.096 3.904 4 H 0.069 0.931 5 C -0.079 4.079 6 C -0.131 4.131 7 C -0.125 4.125 8 C -0.140 4.140 9 C -0.148 4.148 10 C -0.104 4.104 11 C -0.064 4.064 12 C 0.066 3.934 13 H 0.001 0.999 14 C -0.498 4.498 15 H 0.062 0.938 16 C 0.011 3.989 17 N -0.905 5.905 18 Si 0.951 3.049 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.279 1.279 22 H 0.093 0.907 23 H 0.043 0.957 24 H 0.052 0.948 25 H 0.090 0.910 26 H 0.071 0.929 27 H 0.138 0.862 28 H 0.146 0.854 29 H 0.128 0.872 30 H 0.123 0.877 31 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.804 4.434 -5.936 9.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.306 6.306 3 C 0.038 3.962 4 H 0.087 0.913 5 C -0.116 4.116 6 C -0.131 4.131 7 C -0.143 4.143 8 C -0.158 4.158 9 C -0.167 4.167 10 C -0.123 4.123 11 C -0.065 4.065 12 C 0.047 3.953 13 H 0.019 0.981 14 C -0.536 4.536 15 H 0.080 0.920 16 C -0.187 4.187 17 N -0.544 5.544 18 Si 0.778 3.222 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.205 1.205 22 H 0.111 0.889 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.108 0.892 26 H 0.089 0.911 27 H 0.156 0.844 28 H 0.164 0.836 29 H 0.146 0.854 30 H 0.141 0.859 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.546 4.279 -5.838 9.119 hybrid contribution 0.604 -0.805 0.425 1.092 sum -4.942 3.474 -5.413 8.112 Atomic orbital electron populations 1.22971 0.80881 1.03337 1.00400 1.88070 1.20144 1.27507 1.94845 1.22696 0.94528 0.83810 0.95180 0.91275 1.21283 0.94461 0.98338 0.97555 1.20750 0.98306 0.98626 0.95462 1.20730 0.96494 0.97652 0.99423 1.21169 0.96388 1.01537 0.96674 1.21308 1.00637 0.99478 0.95233 1.21335 0.94649 0.94611 1.01664 1.20950 0.95834 0.93420 0.96275 1.18460 0.90123 0.93681 0.93009 0.98121 1.21165 1.01317 0.94480 1.36632 0.92018 1.25688 0.97675 1.00016 0.95327 1.69984 1.13529 1.31672 1.39239 0.85602 0.78036 0.80966 0.77621 1.19593 1.21088 1.20514 0.88881 0.93877 0.92943 0.89165 0.91064 0.84421 0.83636 0.85429 0.85912 0.93229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 10.85 113.37 1.23 1.82 16 2 O -0.39 -16.22 8.66 -148.98 -1.29 -17.51 16 3 C 0.10 4.05 3.39 31.51 0.11 4.15 16 4 H 0.07 2.61 7.82 -2.39 -0.02 2.59 16 5 C -0.08 -3.03 6.51 30.51 0.20 -2.83 16 6 C -0.13 -5.57 6.14 -19.60 -0.12 -5.69 16 7 C -0.13 -4.51 10.04 22.30 0.22 -4.28 16 8 C -0.14 -4.86 10.05 22.24 0.22 -4.64 16 9 C -0.15 -5.93 10.05 22.24 0.22 -5.71 16 10 C -0.10 -5.07 8.79 22.30 0.20 -4.88 16 11 C -0.06 -3.19 5.13 -19.60 -0.10 -3.29 16 12 C 0.07 3.44 2.79 -11.61 -0.03 3.41 16 13 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 14 C -0.50 -28.46 8.24 25.60 0.21 -28.25 16 15 H 0.06 3.60 6.60 -2.91 -0.02 3.58 16 16 C 0.01 0.65 5.32 84.66 0.45 1.10 16 17 N -0.90 -52.09 9.67 21.45 0.21 -51.88 16 18 Si 0.95 45.52 29.54 68.60 2.03 47.55 16 19 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 22 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 23 H 0.04 1.16 8.11 -2.39 -0.02 1.14 16 24 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 25 H 0.09 2.75 8.14 -2.38 -0.02 2.73 16 26 H 0.07 2.85 8.10 -2.38 -0.02 2.83 16 27 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 28 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 29 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 30 H 0.12 6.55 6.01 -2.91 -0.02 6.54 16 31 H 0.26 14.20 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -64.41 258.18 4.86 -59.55 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 1.11 Total: 11.37 kcal Atomic # 6 Polarization: -51.90 SS G_CDS: 2.81 Total: -49.09 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: 0.21 Total: -51.88 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -1.29 Total: -17.51 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -64.41 4.86 -59.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799685.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.052 kcal (2) G-P(sol) polarization free energy of solvation -64.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds