Wall clock time and date at job start Mon Mar 30 2020 02:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99900 * 2 1 4 4 H 1.09000 * 110.88287 * 26.48541 * 3 2 1 5 5 C 1.54347 * 110.81876 * 262.97091 * 3 2 1 6 6 C 1.51371 * 105.16453 * 215.42854 * 5 3 2 7 7 C 1.38503 * 130.38774 * 197.17150 * 6 5 3 8 8 C 1.38103 * 120.21624 * 180.02562 * 7 6 5 9 9 C 1.38246 * 119.93336 * 0.02562 * 8 7 6 10 10 C 1.38105 * 119.93906 * 359.97438 * 9 8 7 11 11 C 1.38209 * 109.76297 * 17.18830 * 6 5 3 12 12 C 1.51371 * 109.75940 * 359.97438 * 11 6 5 13 13 H 1.08998 * 110.30271 * 101.83003 * 12 11 6 14 14 C 1.50692 * 110.30451 * 223.88757 * 12 11 6 15 15 H 1.08007 * 120.00192 * 35.38635 * 14 12 11 16 16 C 1.37883 * 120.00236 * 215.11371 * 14 12 11 17 17 N 1.31511 * 119.99717 * 354.90253 * 16 14 12 18 18 Si 1.86793 * 120.00107 * 174.89635 * 16 14 12 19 19 H 1.48503 * 109.47029 * 60.00126 * 18 16 14 20 20 H 1.48499 * 109.47294 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47509 * 300.00312 * 18 16 14 22 22 H 1.08999 * 109.47024 * 60.00094 * 1 2 3 23 23 H 1.09005 * 109.47050 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47390 * 299.99946 * 1 2 3 25 25 H 1.08995 * 110.30286 * 96.50680 * 5 3 2 26 26 H 1.08998 * 110.30414 * 334.35078 * 5 3 2 27 27 H 1.08001 * 119.88961 * 0.02562 * 7 6 5 28 28 H 1.08004 * 120.02862 * 180.02562 * 8 7 6 29 29 H 1.07998 * 120.03408 * 180.02562 * 9 8 7 30 30 H 1.07999 * 119.89429 * 180.02562 * 10 9 8 31 31 H 0.96997 * 120.00048 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3355 2.0312 0.4542 5 6 2.3946 1.7349 -1.4319 6 6 3.6664 2.5407 -1.2756 7 6 4.2823 3.4234 -2.1473 8 6 5.4566 4.0531 -1.7843 9 6 6.0202 3.8018 -0.5472 10 6 5.4076 2.9221 0.3234 11 6 4.2295 2.2901 -0.0386 12 6 3.3744 1.2990 0.7216 13 1 3.8202 0.3052 0.6805 14 6 3.2113 1.7393 2.1535 15 1 3.1377 2.7906 2.3902 16 6 3.1506 0.8000 3.1610 17 7 3.1338 -0.4813 2.8652 18 14 3.0922 1.3473 4.9460 19 1 1.8884 2.1885 5.1667 20 1 3.0313 0.1541 5.8279 21 1 4.3109 2.1346 5.2626 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.6074 2.3510 -1.8661 26 1 2.5763 0.8583 -2.0536 27 1 3.8428 3.6198 -3.1141 28 1 5.9341 4.7411 -2.4663 29 1 6.9383 4.2937 -0.2615 30 1 5.8483 2.7266 1.2899 31 1 3.0907 -1.1422 3.5739 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259799692.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:39 Heat of formation + Delta-G solvation = -25.296793 kcal Electronic energy + Delta-G solvation = -14578.579502 eV Core-core repulsion = 12210.585169 eV Total energy + Delta-G solvation = -2367.994333 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.35100 -36.84236 -34.02010 -32.43375 -30.52057 -27.81764 -27.14693 -25.63732 -23.63501 -21.54281 -20.10814 -19.62483 -16.63624 -15.90020 -15.18009 -14.81589 -14.59281 -14.29560 -13.60087 -13.52910 -12.78773 -12.50247 -12.32451 -11.96731 -11.55547 -11.52191 -10.97408 -10.82369 -10.68907 -10.52573 -10.15175 -9.88865 -9.44116 -9.23169 -8.76796 -8.28374 -8.07990 -7.63987 -5.99566 -4.06788 2.06667 2.17699 3.30862 3.36200 3.38725 4.39895 4.54517 4.76023 5.19503 5.29959 5.55372 5.69175 5.73955 5.88991 5.96048 6.02144 6.21839 6.22850 6.28211 6.36427 6.37324 6.64844 6.73169 6.93778 7.10405 7.11831 7.31113 7.53114 7.63900 7.79381 7.87114 8.28521 8.40337 9.01266 9.56885 11.06740 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.023614 B = 0.012315 C = 0.008607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.429770 B = 2273.020030 C = 3252.249570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.098 3.902 4 H 0.062 0.938 5 C -0.105 4.105 6 C -0.115 4.115 7 C -0.115 4.115 8 C -0.146 4.146 9 C -0.129 4.129 10 C -0.102 4.102 11 C -0.044 4.044 12 C 0.070 3.930 13 H 0.086 0.914 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.071 3.929 17 N -0.870 5.870 18 Si 0.888 3.112 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 H 0.024 0.976 23 H 0.072 0.928 24 H 0.036 0.964 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.429 4.653 -6.693 8.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.039 3.961 4 H 0.080 0.920 5 C -0.143 4.143 6 C -0.115 4.115 7 C -0.133 4.133 8 C -0.164 4.164 9 C -0.147 4.147 10 C -0.120 4.120 11 C -0.045 4.045 12 C 0.052 3.948 13 H 0.104 0.896 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.133 4.133 17 N -0.506 5.506 18 Si 0.716 3.284 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.201 1.201 22 H 0.042 0.958 23 H 0.091 0.909 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.125 0.875 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.138 0.862 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.328 4.276 -6.601 7.872 hybrid contribution -0.289 0.575 0.928 1.129 sum -0.616 4.851 -5.673 7.490 Atomic orbital electron populations 1.22594 0.83594 1.01220 0.98627 1.88014 1.17354 1.27697 1.94380 1.23226 0.97651 0.83674 0.91530 0.92028 1.21626 0.94046 0.98321 1.00293 1.20583 0.97632 0.97907 0.95413 1.20461 0.96171 0.97956 0.98735 1.20760 0.96837 1.01722 0.97106 1.20956 0.99852 0.99407 0.94535 1.20698 0.95428 0.96424 0.99475 1.21280 0.93778 0.95551 0.93851 1.18528 0.88049 0.95346 0.92911 0.89588 1.20853 1.51946 0.92808 0.90071 0.92660 1.25006 0.94470 0.94949 0.98867 1.69989 1.48142 0.99904 1.32559 0.86732 0.78700 0.78045 0.84944 1.20295 1.21269 1.20139 0.95767 0.90947 0.94566 0.92505 0.90425 0.87517 0.87133 0.86985 0.86150 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 10.85 101.05 1.10 1.77 16 2 O -0.36 -8.26 10.44 -35.23 -0.37 -8.62 16 3 C 0.10 2.23 3.06 -25.33 -0.08 2.15 16 4 H 0.06 1.42 7.60 -51.93 -0.39 1.02 16 5 C -0.11 -2.06 6.52 -26.85 -0.18 -2.23 16 6 C -0.12 -2.33 6.14 -104.21 -0.64 -2.97 16 7 C -0.12 -2.01 10.04 -39.53 -0.40 -2.41 16 8 C -0.15 -2.40 10.05 -39.63 -0.40 -2.80 16 9 C -0.13 -2.25 10.05 -39.63 -0.40 -2.65 16 10 C -0.10 -2.11 9.78 -39.53 -0.39 -2.50 16 11 C -0.04 -1.00 5.60 -104.20 -0.58 -1.58 16 12 C 0.07 1.77 2.68 -91.90 -0.25 1.53 16 13 H 0.09 2.47 7.33 -51.93 -0.38 2.09 16 14 C -0.52 -14.11 8.07 -34.44 -0.28 -14.39 16 15 H 0.06 1.50 7.82 -52.48 -0.41 1.09 16 16 C 0.07 1.96 5.45 -17.82 -0.10 1.87 16 17 N -0.87 -25.01 12.83 55.43 0.71 -24.30 16 18 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 23 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.04 0.66 8.12 -51.93 -0.42 0.24 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.08 1.48 8.10 -51.93 -0.42 1.06 16 27 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 28 H 0.11 1.47 8.06 -52.48 -0.42 1.04 16 29 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 266.34 15.07 4.01 4.01 Total: -1.00 -29.20 266.34 -7.37 -36.57 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -4.12 Total: 0.52 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: -2.58 Total: -24.23 kcal Atomic # 7 Polarization: -25.01 SS G_CDS: 0.71 Total: -24.30 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.37 Total: -8.62 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.20 -7.37 -36.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799692.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.271 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds