Wall clock time and date at job start Mon Mar 30 2020 02:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99900 * 2 1 4 4 H 1.09000 * 110.88287 * 26.48541 * 3 2 1 5 5 C 1.54347 * 110.81876 * 262.97091 * 3 2 1 6 6 C 1.51371 * 105.16453 * 215.42854 * 5 3 2 7 7 C 1.38503 * 130.38774 * 197.17150 * 6 5 3 8 8 C 1.38103 * 120.21624 * 180.02562 * 7 6 5 9 9 C 1.38246 * 119.93336 * 0.02562 * 8 7 6 10 10 C 1.38105 * 119.93906 * 359.97438 * 9 8 7 11 11 C 1.38209 * 109.76297 * 17.18830 * 6 5 3 12 12 C 1.51371 * 109.75940 * 359.97438 * 11 6 5 13 13 H 1.08998 * 110.30271 * 101.83003 * 12 11 6 14 14 C 1.50692 * 110.30451 * 223.88757 * 12 11 6 15 15 H 1.08007 * 120.00192 * 35.38635 * 14 12 11 16 16 C 1.37883 * 120.00236 * 215.11371 * 14 12 11 17 17 N 1.31511 * 119.99717 * 354.90253 * 16 14 12 18 18 Si 1.86793 * 120.00107 * 174.89635 * 16 14 12 19 19 H 1.48503 * 109.47029 * 60.00126 * 18 16 14 20 20 H 1.48499 * 109.47294 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47509 * 300.00312 * 18 16 14 22 22 H 1.08999 * 109.47024 * 60.00094 * 1 2 3 23 23 H 1.09005 * 109.47050 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47390 * 299.99946 * 1 2 3 25 25 H 1.08995 * 110.30286 * 96.50680 * 5 3 2 26 26 H 1.08998 * 110.30414 * 334.35078 * 5 3 2 27 27 H 1.08001 * 119.88961 * 0.02562 * 7 6 5 28 28 H 1.08004 * 120.02862 * 180.02562 * 8 7 6 29 29 H 1.07998 * 120.03408 * 180.02562 * 9 8 7 30 30 H 1.07999 * 119.89429 * 180.02562 * 10 9 8 31 31 H 0.96997 * 120.00048 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3355 2.0312 0.4542 5 6 2.3946 1.7349 -1.4319 6 6 3.6664 2.5407 -1.2756 7 6 4.2823 3.4234 -2.1473 8 6 5.4566 4.0531 -1.7843 9 6 6.0202 3.8018 -0.5472 10 6 5.4076 2.9221 0.3234 11 6 4.2295 2.2901 -0.0386 12 6 3.3744 1.2990 0.7216 13 1 3.8202 0.3052 0.6805 14 6 3.2113 1.7393 2.1535 15 1 3.1377 2.7906 2.3902 16 6 3.1506 0.8000 3.1610 17 7 3.1338 -0.4813 2.8652 18 14 3.0922 1.3473 4.9460 19 1 1.8884 2.1885 5.1667 20 1 3.0313 0.1541 5.8279 21 1 4.3109 2.1346 5.2626 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.6074 2.3510 -1.8661 26 1 2.5763 0.8583 -2.0536 27 1 3.8428 3.6198 -3.1141 28 1 5.9341 4.7411 -2.4663 29 1 6.9383 4.2937 -0.2615 30 1 5.8483 2.7266 1.2899 31 1 3.0907 -1.1422 3.5739 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259799692.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:38 Heat of formation + Delta-G solvation = -42.191513 kcal Electronic energy + Delta-G solvation = -14579.312112 eV Core-core repulsion = 12210.585169 eV Total energy + Delta-G solvation = -2368.726943 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.92158 -38.46617 -35.73648 -34.33562 -32.10213 -29.43018 -28.85870 -27.17906 -25.54229 -23.08353 -21.58744 -21.36950 -18.65368 -17.53800 -16.83880 -16.51120 -16.17482 -16.01682 -15.12977 -15.08703 -14.39962 -14.10128 -13.86305 -13.78772 -13.25538 -13.03665 -12.84931 -12.49517 -12.29095 -12.25753 -11.67241 -11.66281 -11.39422 -11.04334 -10.70946 -10.11112 -9.54232 -9.21969 -8.08793 -6.22411 0.61303 0.70280 1.39085 1.40610 1.48545 2.41400 3.04825 3.11014 3.20417 3.75607 4.08843 4.28953 4.33905 4.34897 4.55615 4.56424 4.67490 4.75838 4.83795 4.86039 4.88721 5.06702 5.24008 5.26955 5.49078 5.54060 5.69894 5.73340 5.81361 6.03607 6.24878 6.35819 6.66589 6.91569 7.43336 8.96826 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.023614 B = 0.012315 C = 0.008607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.429770 B = 2273.020030 C = 3252.249570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.099 3.901 4 H 0.051 0.949 5 C -0.093 4.093 6 C -0.126 4.126 7 C -0.111 4.111 8 C -0.132 4.132 9 C -0.124 4.124 10 C -0.126 4.126 11 C -0.086 4.086 12 C 0.064 3.936 13 H 0.036 0.964 14 C -0.528 4.528 15 H 0.048 0.952 16 C 0.021 3.979 17 N -0.906 5.906 18 Si 0.950 3.050 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.270 1.270 22 H 0.055 0.945 23 H 0.090 0.910 24 H 0.027 0.973 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.143 0.857 28 H 0.156 0.844 29 H 0.145 0.855 30 H 0.103 0.897 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.266 6.771 -8.406 10.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C 0.041 3.959 4 H 0.069 0.931 5 C -0.130 4.130 6 C -0.126 4.126 7 C -0.129 4.129 8 C -0.149 4.149 9 C -0.142 4.142 10 C -0.144 4.144 11 C -0.086 4.086 12 C 0.045 3.955 13 H 0.054 0.946 14 C -0.566 4.566 15 H 0.066 0.934 16 C -0.180 4.180 17 N -0.543 5.543 18 Si 0.776 3.224 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.195 1.195 22 H 0.073 0.927 23 H 0.108 0.892 24 H 0.045 0.955 25 H 0.105 0.895 26 H 0.098 0.902 27 H 0.161 0.839 28 H 0.174 0.826 29 H 0.163 0.837 30 H 0.121 0.879 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.169 6.407 -8.319 10.502 hybrid contribution -0.298 -0.035 1.389 1.421 sum -0.467 6.373 -6.930 9.426 Atomic orbital electron populations 1.22803 0.81201 1.02796 0.99651 1.87959 1.20116 1.28115 1.94721 1.23007 0.95899 0.83425 0.93597 0.93075 1.21477 0.94858 0.98819 0.97884 1.20757 0.97874 0.98912 0.95076 1.20884 0.96188 0.96316 0.99479 1.21304 0.95902 1.00883 0.96857 1.21310 1.00554 0.97957 0.94357 1.20787 0.95577 0.98099 0.99930 1.21144 0.95229 0.96927 0.95327 1.18415 0.90105 0.93769 0.93173 0.94570 1.21119 1.51350 0.92377 0.91775 0.93419 1.25756 0.94386 0.94945 1.02920 1.70138 1.49711 1.00898 1.33540 0.85741 0.78941 0.77722 0.80031 1.19601 1.20877 1.19491 0.92669 0.89196 0.95473 0.89480 0.90193 0.83878 0.82609 0.83730 0.87910 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.16 10.85 113.37 1.23 2.39 16 2 O -0.39 -18.58 10.44 -148.98 -1.55 -20.13 16 3 C 0.10 4.63 3.06 31.50 0.10 4.72 16 4 H 0.05 2.42 7.60 -2.39 -0.02 2.40 16 5 C -0.09 -3.54 6.52 30.52 0.20 -3.34 16 6 C -0.13 -4.93 6.14 -19.59 -0.12 -5.05 16 7 C -0.11 -3.43 10.04 22.30 0.22 -3.21 16 8 C -0.13 -3.70 10.05 22.24 0.22 -3.48 16 9 C -0.12 -3.97 10.05 22.24 0.22 -3.75 16 10 C -0.13 -5.24 9.78 22.30 0.22 -5.02 16 11 C -0.09 -3.97 5.60 -19.59 -0.11 -4.08 16 12 C 0.06 3.41 2.68 -11.63 -0.03 3.38 16 13 H 0.04 2.25 7.33 -2.39 -0.02 2.23 16 14 C -0.53 -30.08 8.07 25.60 0.21 -29.88 16 15 H 0.05 2.70 7.82 -2.91 -0.02 2.68 16 16 C 0.02 1.17 5.45 84.66 0.46 1.63 16 17 N -0.91 -54.59 12.83 21.45 0.28 -54.31 16 18 Si 0.95 44.51 29.54 68.60 2.03 46.54 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.09 2.87 8.14 -2.38 -0.02 2.85 16 24 H 0.03 1.00 8.12 -2.39 -0.02 0.98 16 25 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 26 H 0.08 2.97 8.10 -2.39 -0.02 2.95 16 27 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 28 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 29 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 30 H 0.10 4.47 8.06 -2.91 -0.02 4.45 16 31 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -66.63 266.34 4.67 -61.96 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 1.10 Total: 11.61 kcal Atomic # 6 Polarization: -48.49 SS G_CDS: 2.82 Total: -45.67 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.28 Total: -54.31 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -1.55 Total: -20.13 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -66.63 4.67 -61.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799692.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.771 kcal (2) G-P(sol) polarization free energy of solvation -66.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds