Wall clock time and date at job start Mon Mar 30 2020 02:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48501 * 109.47177 * 239.99688 * 3 2 1 5 5 H 1.48496 * 109.47387 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47294 * 120.00231 * 3 2 1 7 7 C 1.37881 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99746 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99709 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.37918 * 120.46424 * 264.99928 * 10 9 7 12 12 N 1.31975 * 120.84460 * 179.97438 * 11 10 9 13 13 C 1.32019 * 121.90756 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.84065 * 0.02685 * 13 12 11 15 15 C 1.39451 * 120.47095 * 84.71945 * 10 9 7 16 16 N 1.39170 * 120.86180 * 0.02562 * 15 10 9 17 17 C 1.46503 * 119.99957 * 180.02562 * 16 15 10 18 18 C 1.52998 * 117.49802 * 223.74837 * 17 16 15 19 19 C 1.52996 * 117.50072 * 155.08372 * 17 16 15 20 20 H 0.96996 * 120.00425 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47496 * 60.00360 * 9 7 2 22 22 H 1.09005 * 109.47284 * 299.99896 * 9 7 2 23 23 H 1.08000 * 119.57656 * 359.97438 * 11 10 9 24 24 H 1.07992 * 119.57649 * 179.97438 * 13 12 11 25 25 H 1.08005 * 120.46054 * 179.97438 * 14 13 12 26 26 H 0.96996 * 120.00191 * 359.97438 * 16 15 10 27 27 H 1.09000 * 115.54962 * 9.40826 * 17 16 15 28 28 H 1.09004 * 117.49857 * 359.97438 * 18 17 16 29 29 H 1.08997 * 117.50114 * 145.02197 * 18 17 16 30 30 H 1.08995 * 117.49935 * 214.97702 * 19 17 16 31 31 H 1.08999 * 117.49859 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.6061 -4.2434 -1.1848 12 7 3.4635 -5.2466 -1.1936 13 6 3.9957 -5.7194 -0.0818 14 6 3.6714 -5.1768 1.1435 15 6 2.7740 -4.1102 1.1963 16 7 2.4252 -3.5301 2.4122 17 6 3.0082 -4.0339 3.6582 18 6 2.0706 -4.2181 4.8531 19 6 3.0828 -3.0698 4.8439 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.1933 -3.8867 -2.1169 24 1 4.6933 -6.5422 -0.1326 25 1 4.1102 -5.5686 2.0493 26 1 1.7966 -2.7917 2.4347 27 1 3.8206 -4.7511 3.5409 28 1 1.0200 -3.9640 4.7123 29 1 2.2664 -5.0561 5.5221 30 1 3.9440 -3.1529 5.5067 31 1 2.6985 -2.0605 4.6967 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260037177.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:01 Heat of formation + Delta-G solvation = 52.722555 kcal Electronic energy + Delta-G solvation = -14180.392667 eV Core-core repulsion = 11848.074258 eV Total energy + Delta-G solvation = -2332.318409 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.61105 -37.46297 -34.24903 -33.10076 -31.23689 -29.18153 -27.09580 -23.71972 -22.99477 -22.28810 -20.91031 -20.42863 -17.38360 -16.36515 -16.35974 -14.94534 -14.83772 -14.35799 -14.13203 -13.44668 -13.29020 -12.58106 -12.51769 -12.14979 -11.86419 -11.46668 -11.39236 -11.15600 -10.73833 -10.58116 -10.34434 -9.87898 -9.69419 -9.47976 -8.67660 -8.44874 -8.15775 -7.01125 -6.09369 -4.14722 1.96676 2.26308 3.27459 3.32236 3.35906 3.70967 3.99817 4.37058 4.69770 4.89826 5.01399 5.09526 5.20997 5.23755 5.50763 5.57114 5.69501 5.82657 6.00057 6.02773 6.17748 6.28663 6.50529 6.60131 6.80677 7.33860 7.43985 7.62851 7.83784 7.87577 8.20010 8.26126 8.83721 8.91234 9.50100 10.98799 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.020080 B = 0.010740 C = 0.007845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.099087 B = 2606.424920 C = 3568.202430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.062 3.938 10 C -0.156 4.156 11 C 0.118 3.882 12 N -0.532 5.532 13 C 0.106 3.894 14 C -0.259 4.259 15 C 0.247 3.753 16 N -0.700 5.700 17 C 0.092 3.908 18 C -0.203 4.203 19 C -0.196 4.196 20 H 0.263 0.737 21 H 0.032 0.968 22 H 0.022 0.978 23 H 0.148 0.852 24 H 0.140 0.860 25 H 0.120 0.880 26 H 0.415 0.585 27 H 0.126 0.874 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.906 -7.644 7.394 11.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.025 3.975 10 C -0.162 4.162 11 C -0.036 4.036 12 N -0.244 5.244 13 C -0.051 4.051 14 C -0.284 4.284 15 C 0.136 3.864 16 N -0.329 5.329 17 C -0.016 4.016 18 C -0.242 4.242 19 C -0.234 4.234 20 H 0.073 0.927 21 H 0.050 0.950 22 H 0.040 0.960 23 H 0.166 0.834 24 H 0.158 0.842 25 H 0.138 0.862 26 H 0.254 0.746 27 H 0.143 0.857 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.048 -7.961 6.706 11.568 hybrid contribution -0.005 1.723 0.988 1.986 sum 5.044 -6.238 7.694 11.115 Atomic orbital electron populations 1.69937 1.05967 1.26985 1.50264 1.24999 0.94844 0.99168 0.95144 0.86629 0.79565 0.82924 0.78769 1.20103 1.21247 1.20305 1.21037 0.92953 0.89852 1.51229 0.92676 1.18066 0.92150 0.89185 0.98138 1.21159 1.02840 1.00703 0.91504 1.22350 0.93025 0.90962 0.97235 1.67612 1.11976 1.13907 1.30881 1.22146 0.97316 0.98026 0.87653 1.21450 1.05639 1.01807 0.99514 1.17853 0.91772 0.90736 0.86063 1.44052 1.49290 1.38189 1.01344 1.21462 0.98954 1.00444 0.80714 1.23470 0.97481 1.00735 1.02487 1.23383 1.01865 0.96326 1.01857 0.92746 0.95009 0.95971 0.83449 0.84247 0.86219 0.74562 0.85653 0.88590 0.88546 0.88383 0.88307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -13.85 9.09 -34.44 -0.31 -14.16 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.06 1.55 4.60 -29.03 -0.13 1.41 16 10 C -0.16 -3.41 5.10 -104.28 -0.53 -3.94 16 11 C 0.12 2.47 10.83 -17.61 -0.19 2.28 16 12 N -0.53 -10.51 10.36 -13.35 -0.14 -10.65 16 13 C 0.11 1.83 11.17 -17.60 -0.20 1.63 16 14 C -0.26 -4.40 9.38 -39.25 -0.37 -4.77 16 15 C 0.25 4.83 6.67 -83.61 -0.56 4.27 16 16 N -0.70 -12.53 5.65 -52.00 -0.29 -12.82 16 17 C 0.09 1.28 6.34 -67.93 -0.43 0.85 16 18 C -0.20 -2.42 10.46 -26.69 -0.28 -2.70 16 19 C -0.20 -2.42 10.46 -26.69 -0.28 -2.70 16 20 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 21 H 0.03 0.83 8.06 -51.93 -0.42 0.42 16 22 H 0.02 0.57 6.94 -51.93 -0.36 0.21 16 23 H 0.15 2.92 8.06 -52.49 -0.42 2.50 16 24 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 25 H 0.12 1.67 6.03 -52.48 -0.32 1.36 16 26 H 0.42 8.15 7.09 -40.82 -0.29 7.87 16 27 H 0.13 1.55 5.98 -51.93 -0.31 1.24 16 28 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 268.55 15.07 4.05 4.05 Total: -1.00 -29.19 268.55 -7.82 -37.01 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -3.77 Total: 7.26 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -3.38 Total: -16.27 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.30 Total: -48.25 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.19 -7.82 -37.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260037177.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.736 kcal (2) G-P(sol) polarization free energy of solvation -29.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds