Wall clock time and date at job start Mon Mar 30 2020 02:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48501 * 109.47177 * 239.99688 * 3 2 1 5 5 H 1.48496 * 109.47387 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47294 * 120.00231 * 3 2 1 7 7 C 1.37881 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99746 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99709 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.37918 * 120.46424 * 264.99928 * 10 9 7 12 12 N 1.31975 * 120.84460 * 179.97438 * 11 10 9 13 13 C 1.32019 * 121.90756 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.84065 * 0.02685 * 13 12 11 15 15 C 1.39451 * 120.47095 * 84.71945 * 10 9 7 16 16 N 1.39170 * 120.86180 * 0.02562 * 15 10 9 17 17 C 1.46503 * 119.99957 * 180.02562 * 16 15 10 18 18 C 1.52998 * 117.49802 * 223.74837 * 17 16 15 19 19 C 1.52996 * 117.50072 * 155.08372 * 17 16 15 20 20 H 0.96996 * 120.00425 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47496 * 60.00360 * 9 7 2 22 22 H 1.09005 * 109.47284 * 299.99896 * 9 7 2 23 23 H 1.08000 * 119.57656 * 359.97438 * 11 10 9 24 24 H 1.07992 * 119.57649 * 179.97438 * 13 12 11 25 25 H 1.08005 * 120.46054 * 179.97438 * 14 13 12 26 26 H 0.96996 * 120.00191 * 359.97438 * 16 15 10 27 27 H 1.09000 * 115.54962 * 9.40826 * 17 16 15 28 28 H 1.09004 * 117.49857 * 359.97438 * 18 17 16 29 29 H 1.08997 * 117.50114 * 145.02197 * 18 17 16 30 30 H 1.08995 * 117.49935 * 214.97702 * 19 17 16 31 31 H 1.08999 * 117.49859 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.6061 -4.2434 -1.1848 12 7 3.4635 -5.2466 -1.1936 13 6 3.9957 -5.7194 -0.0818 14 6 3.6714 -5.1768 1.1435 15 6 2.7740 -4.1102 1.1963 16 7 2.4252 -3.5301 2.4122 17 6 3.0082 -4.0339 3.6582 18 6 2.0706 -4.2181 4.8531 19 6 3.0828 -3.0698 4.8439 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.1933 -3.8867 -2.1169 24 1 4.6933 -6.5422 -0.1326 25 1 4.1102 -5.5686 2.0493 26 1 1.7966 -2.7917 2.4347 27 1 3.8206 -4.7511 3.5409 28 1 1.0200 -3.9640 4.7123 29 1 2.2664 -5.0561 5.5221 30 1 3.9440 -3.1529 5.5067 31 1 2.6985 -2.0605 4.6967 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260037177.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:00 Heat of formation + Delta-G solvation = 35.031697 kcal Electronic energy + Delta-G solvation = -14181.159801 eV Core-core repulsion = 11848.074258 eV Total energy + Delta-G solvation = -2333.085542 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.06946 -38.61914 -35.90617 -34.79367 -32.98180 -30.60750 -28.92969 -25.53667 -24.41932 -23.24446 -22.43658 -21.78968 -18.74831 -18.47879 -17.72006 -16.70925 -16.11491 -15.75086 -15.56502 -15.02048 -14.62862 -14.32326 -13.98836 -13.71188 -13.33245 -13.13854 -12.95831 -12.61501 -12.41679 -12.38687 -11.66943 -11.57396 -11.31697 -10.91511 -10.63584 -10.14754 -9.68824 -8.48366 -8.16022 -6.33249 0.48135 0.77808 1.37515 1.39089 1.47362 2.37901 2.41370 2.94854 3.09690 3.23926 3.78269 3.87396 3.93362 4.10063 4.19756 4.24801 4.51092 4.63592 4.77617 4.81266 5.00201 5.07819 5.11007 5.23472 5.24654 5.34475 5.65073 5.72087 5.95982 6.16981 6.50124 6.68550 6.77732 7.33890 7.37215 8.87294 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.020080 B = 0.010740 C = 0.007845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.099087 B = 2606.424920 C = 3568.202430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.957 3.043 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.520 4.520 8 H 0.046 0.954 9 C 0.077 3.923 10 C -0.191 4.191 11 C 0.110 3.890 12 N -0.548 5.548 13 C 0.112 3.888 14 C -0.251 4.251 15 C 0.241 3.759 16 N -0.706 5.706 17 C 0.069 3.931 18 C -0.188 4.188 19 C -0.191 4.191 20 H 0.265 0.735 21 H 0.003 0.997 22 H 0.005 0.995 23 H 0.142 0.858 24 H 0.184 0.816 25 H 0.159 0.841 26 H 0.401 0.599 27 H 0.148 0.852 28 H 0.081 0.919 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.940 -8.636 8.975 14.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.782 3.218 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.195 1.195 7 C -0.558 4.558 8 H 0.064 0.936 9 C 0.040 3.960 10 C -0.198 4.198 11 C -0.044 4.044 12 N -0.261 5.261 13 C -0.045 4.045 14 C -0.276 4.276 15 C 0.128 3.872 16 N -0.333 5.333 17 C -0.037 4.037 18 C -0.227 4.227 19 C -0.229 4.229 20 H 0.074 0.926 21 H 0.021 0.979 22 H 0.023 0.977 23 H 0.160 0.840 24 H 0.201 0.799 25 H 0.176 0.824 26 H 0.238 0.762 27 H 0.166 0.834 28 H 0.100 0.900 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.096 -8.969 8.314 14.139 hybrid contribution -0.624 1.954 0.557 2.126 sum 6.472 -7.015 8.871 13.030 Atomic orbital electron populations 1.70050 1.07376 1.27878 1.51165 1.25788 0.95632 1.02549 0.94745 0.85624 0.78389 0.78852 0.78927 1.19804 1.20601 1.19471 1.21233 0.92560 0.91147 1.50877 0.93584 1.17736 0.92248 0.90241 0.95823 1.20913 1.04250 1.01206 0.93393 1.22300 0.93620 0.91614 0.96843 1.67672 1.12286 1.13771 1.32338 1.22904 0.96564 0.98113 0.86928 1.21805 1.04329 1.00348 1.01095 1.18075 0.91955 0.91384 0.85777 1.44258 1.48959 1.37650 1.02402 1.21865 1.00394 1.01908 0.79571 1.23515 0.96462 1.01402 1.01351 1.23442 1.02935 0.95350 1.01207 0.92605 0.97859 0.97672 0.84011 0.79937 0.82385 0.76247 0.83424 0.90011 0.85549 0.85626 0.90223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.31 13.29 21.45 0.28 -54.02 16 2 C 0.01 0.65 5.46 84.66 0.46 1.11 16 3 Si 0.96 43.93 29.54 68.60 2.03 45.96 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.52 -29.01 9.09 25.60 0.23 -28.78 16 8 H 0.05 2.60 7.74 -2.91 -0.02 2.58 16 9 C 0.08 4.04 4.60 29.10 0.13 4.18 16 10 C -0.19 -8.57 5.10 -19.65 -0.10 -8.67 16 11 C 0.11 4.70 10.83 84.60 0.92 5.61 16 12 N -0.55 -21.06 10.36 -196.16 -2.03 -23.10 16 13 C 0.11 3.51 11.17 84.58 0.94 4.45 16 14 C -0.25 -7.79 9.38 22.48 0.21 -7.58 16 15 C 0.24 9.26 6.67 38.57 0.26 9.52 16 16 N -0.71 -25.01 5.65 -318.44 -1.80 -26.81 16 17 C 0.07 1.74 6.34 44.99 0.29 2.03 16 18 C -0.19 -4.03 10.46 30.62 0.32 -3.71 16 19 C -0.19 -4.28 10.46 30.62 0.32 -3.96 16 20 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 21 H 0.00 0.17 8.06 -2.39 -0.02 0.16 16 22 H 0.01 0.28 6.94 -2.38 -0.02 0.26 16 23 H 0.14 5.94 8.06 -2.91 -0.02 5.92 16 24 H 0.18 4.07 8.06 -2.91 -0.02 4.05 16 25 H 0.16 3.63 6.03 -2.91 -0.02 3.61 16 26 H 0.40 16.25 7.09 -92.71 -0.66 15.60 16 27 H 0.15 3.03 5.98 -2.39 -0.01 3.01 16 28 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 29 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -64.16 268.55 2.94 -61.22 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.48 Total: 22.55 kcal Atomic # 6 Polarization: -29.78 SS G_CDS: 3.98 Total: -25.80 kcal Atomic # 7 Polarization: -100.38 SS G_CDS: -3.55 Total: -103.93 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -64.16 2.94 -61.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260037177.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.253 kcal (2) G-P(sol) polarization free energy of solvation -64.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds