Wall clock time and date at job start Mon Mar 30 2020 03:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38233 * 120.07293 * 2 1 4 4 C 1.38324 * 120.27012 * 180.27212 * 3 2 1 5 5 C 1.38331 * 120.28828 * 359.47551 * 4 3 2 6 6 C 1.38551 * 119.88303 * 0.28138 * 5 4 3 7 7 C 1.38783 * 120.07244 * 179.70925 * 2 1 3 8 8 N 1.39609 * 120.28346 * 359.82408 * 7 2 1 9 9 C 1.36807 * 120.59306 * 343.28407 * 8 7 2 10 10 H 1.07998 * 119.99742 * 323.93317 * 9 8 7 11 11 C 1.38748 * 120.00047 * 143.92487 * 9 8 7 12 12 N 1.31624 * 120.00384 * 351.93378 * 11 9 8 13 13 Si 1.86804 * 119.99835 * 171.92569 * 11 9 8 14 14 H 1.48499 * 109.47144 * 90.00373 * 13 11 9 15 15 H 1.48496 * 109.47215 * 210.00213 * 13 11 9 16 16 H 1.48497 * 109.47072 * 330.00554 * 13 11 9 17 17 C 1.47038 * 118.82344 * 163.31067 * 8 7 2 18 18 C 1.53551 * 108.22633 * 45.16582 * 17 8 7 19 19 N 1.39993 * 120.30201 * 179.78466 * 6 5 4 20 20 H 1.09007 * 109.46821 * 263.50052 * 1 2 3 21 21 H 1.08994 * 109.46928 * 23.50123 * 1 2 3 22 22 H 1.08998 * 109.46999 * 143.50332 * 1 2 3 23 23 H 1.07995 * 119.86742 * 359.97438 * 3 2 1 24 24 H 1.08006 * 119.85525 * 179.74845 * 4 3 2 25 25 H 1.07996 * 120.06047 * 180.30980 * 5 4 3 26 26 H 0.96999 * 120.00360 * 180.02562 * 12 11 9 27 27 H 1.09000 * 109.71745 * 164.85169 * 17 8 7 28 28 H 1.09000 * 109.71659 * 285.48403 * 17 8 7 29 29 H 1.09000 * 109.71618 * 63.08430 * 18 17 8 30 30 H 1.09000 * 109.71784 * 183.68610 * 18 17 8 31 31 H 0.96998 * 120.61678 * 343.54813 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1962 0.0000 4 6 3.5829 1.2010 -0.0057 5 6 4.2847 0.0090 -0.0005 6 6 3.5997 -1.1954 0.0046 7 6 2.2024 -1.2010 0.0061 8 7 1.5119 -2.4143 0.0160 9 6 0.1882 -2.4593 0.3585 10 1 -0.1933 -1.8033 1.1269 11 6 -0.6642 -3.3476 -0.2814 12 7 -0.2403 -4.0325 -1.3225 13 14 -2.4134 -3.5718 0.3347 14 1 -3.3078 -2.6055 -0.3521 15 1 -2.8661 -4.9564 0.0464 16 1 -2.4569 -3.3316 1.7995 17 6 2.2327 -3.6432 -0.3478 18 6 3.5869 -3.6378 0.3761 19 7 4.3011 -2.4069 0.0053 20 1 -0.3633 -0.1163 1.0211 21 1 -0.3633 0.9424 -0.4098 22 1 -0.3633 -0.8261 -0.6112 23 1 1.6587 2.1310 -0.0004 24 1 4.1173 2.1396 -0.0097 25 1 5.3646 0.0170 0.0001 26 1 -0.8364 -4.6532 -1.7701 27 1 1.6543 -4.5139 -0.0390 28 1 2.3922 -3.6706 -1.4257 29 1 3.4277 -3.6600 1.4542 30 1 4.1697 -4.5074 0.0725 31 1 5.2407 -2.4339 -0.2339 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260097567.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:00 Heat of formation + Delta-G solvation = 35.643289 kcal Electronic energy + Delta-G solvation = -15002.018881 eV Core-core repulsion = 12668.959859 eV Total energy + Delta-G solvation = -2333.059022 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.89137 -37.39815 -36.49777 -33.60283 -31.88672 -31.21831 -28.76476 -27.12717 -25.07592 -24.28788 -22.10061 -20.73128 -19.14509 -17.58526 -17.46858 -16.76056 -16.32341 -15.49696 -15.08500 -14.88094 -14.67649 -14.10031 -13.77828 -13.58650 -13.37118 -12.97580 -12.87006 -12.53664 -12.47152 -12.27772 -12.05740 -11.60341 -11.50936 -10.70945 -10.58718 -10.09678 -8.54159 -8.15681 -7.70006 -5.59128 0.93071 1.09779 1.43280 1.46233 1.53435 2.33489 2.80886 3.05293 3.35792 3.40883 4.24782 4.32017 4.45961 4.50614 4.57990 4.75042 4.86093 4.95334 4.99661 5.06123 5.16533 5.32862 5.38346 5.56106 5.69724 5.73468 5.86395 6.12164 6.22506 6.40070 6.67305 6.93577 7.23273 7.56550 7.98386 8.89678 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.032596 B = 0.012377 C = 0.009425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.790171 B = 2261.724315 C = 2970.257517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.163 4.163 3 C -0.129 4.129 4 C -0.171 4.171 5 C -0.152 4.152 6 C 0.094 3.906 7 C 0.131 3.869 8 N -0.491 5.491 9 C -0.293 4.293 10 H 0.087 0.913 11 C -0.023 4.023 12 N -0.919 5.919 13 Si 0.973 3.027 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.265 1.265 17 C 0.146 3.854 18 C 0.115 3.885 19 N -0.753 5.753 20 H 0.048 0.952 21 H 0.050 0.950 22 H 0.066 0.934 23 H 0.124 0.876 24 H 0.135 0.865 25 H 0.134 0.866 26 H 0.262 0.738 27 H 0.065 0.935 28 H 0.020 0.980 29 H 0.042 0.958 30 H 0.106 0.894 31 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.927 3.555 2.714 7.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.170 4.170 3 C -0.149 4.149 4 C -0.192 4.192 5 C -0.175 4.175 6 C -0.009 4.009 7 C 0.021 3.979 8 N -0.188 5.188 9 C -0.422 4.422 10 H 0.105 0.895 11 C -0.222 4.222 12 N -0.559 5.559 13 Si 0.798 3.202 14 H -0.201 1.201 15 H -0.210 1.210 16 H -0.189 1.189 17 C 0.020 3.980 18 C -0.011 4.011 19 N -0.389 5.389 20 H 0.067 0.933 21 H 0.069 0.931 22 H 0.085 0.915 23 H 0.142 0.858 24 H 0.153 0.847 25 H 0.151 0.849 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.038 0.962 29 H 0.060 0.940 30 H 0.124 0.876 31 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 5.575 3.030 2.651 6.877 hybrid contribution -0.741 -0.517 -0.141 0.915 sum 4.834 2.513 2.510 5.999 Atomic orbital electron populations 1.20906 0.91963 1.00827 1.00703 1.19425 0.96120 0.91776 1.09631 1.20752 0.94653 0.95985 1.03488 1.20699 0.93512 0.97480 1.07526 1.20506 0.99330 0.90363 1.07330 1.17597 0.89246 0.87746 1.06356 1.18164 0.90337 0.87810 1.01625 1.42346 1.08024 1.01828 1.66589 1.19686 0.84229 1.21635 1.16601 0.89540 1.26087 1.02432 0.98448 0.95185 1.70119 1.37511 1.27790 1.20460 0.85204 0.78865 0.77326 0.78820 1.20106 1.21015 1.18907 1.21419 0.91554 0.88658 0.96331 1.21885 0.93453 0.87978 0.97814 1.44144 1.11966 1.03562 1.79256 0.93316 0.93086 0.91536 0.85811 0.84676 0.84861 0.92878 0.91620 0.96175 0.93989 0.87564 0.75855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.86 8.12 71.24 0.58 -3.28 16 2 C -0.16 -7.40 5.87 -19.74 -0.12 -7.52 16 3 C -0.13 -4.93 9.67 22.29 0.22 -4.71 16 4 C -0.17 -5.89 10.04 22.31 0.22 -5.66 16 5 C -0.15 -5.42 9.94 22.37 0.22 -5.20 16 6 C 0.09 3.95 6.53 38.27 0.25 4.20 16 7 C 0.13 6.35 6.33 38.39 0.24 6.60 16 8 N -0.49 -25.48 2.95 -509.02 -1.50 -26.98 16 9 C -0.29 -15.59 5.97 84.04 0.50 -15.09 16 10 H 0.09 4.56 5.39 -2.91 -0.02 4.55 16 11 C -0.02 -1.21 4.93 84.85 0.42 -0.79 16 12 N -0.92 -51.23 11.46 21.64 0.25 -50.99 16 13 Si 0.97 42.17 29.56 68.60 2.03 44.20 16 14 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 15 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 16 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 17 C 0.15 6.94 5.09 86.46 0.44 7.38 16 18 C 0.12 4.25 7.28 86.46 0.63 4.88 16 19 N -0.75 -27.13 5.83 -336.61 -1.96 -29.09 16 20 H 0.05 2.09 6.78 -2.38 -0.02 2.07 16 21 H 0.05 1.93 8.04 -2.39 -0.02 1.92 16 22 H 0.07 3.38 5.50 -2.39 -0.01 3.37 16 23 H 0.12 4.05 8.06 -2.91 -0.02 4.03 16 24 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 25 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 26 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 27 H 0.07 3.31 6.92 -2.39 -0.02 3.30 16 28 H 0.02 1.04 8.14 -2.39 -0.02 1.03 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 31 H 0.41 11.64 8.90 -92.71 -0.83 10.81 16 Total: -1.00 -61.27 249.32 2.74 -58.54 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.32 Total: 23.52 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: 3.61 Total: -19.19 kcal Atomic # 7 Polarization: -103.85 SS G_CDS: -3.21 Total: -107.06 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -61.27 2.74 -58.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260097567.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.181 kcal (2) G-P(sol) polarization free energy of solvation -61.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds