Wall clock time and date at job start Mon Mar 30 2020 02:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 11 11 N 1.46902 * 109.47072 * 59.99845 * 9 7 2 12 12 C 1.50703 * 109.46925 * 179.97438 * 9 7 2 13 13 C 1.38259 * 120.45112 * 264.71892 * 12 9 7 14 14 N 1.31859 * 120.70556 * 179.70357 * 13 12 9 15 15 C 1.31861 * 121.78520 * 0.57991 * 14 13 12 16 16 C 1.38296 * 120.75956 * 359.72605 * 15 14 13 17 17 C 1.38513 * 119.04452 * 359.97309 * 16 15 14 18 18 C 1.51052 * 109.87141 * 180.02562 * 17 16 15 19 19 C 1.54414 * 105.15058 * 17.04430 * 18 17 16 20 20 C 1.51181 * 131.27427 * 179.97438 * 16 15 14 21 21 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 22 22 H 1.00903 * 110.99961 * 59.99933 * 11 9 7 23 23 H 1.00891 * 110.99940 * 183.95812 * 11 9 7 24 24 H 1.08003 * 119.64435 * 359.97438 * 13 12 9 25 25 H 1.08003 * 119.62220 * 179.70661 * 15 14 13 26 26 H 1.08989 * 110.30854 * 135.96727 * 18 17 16 27 27 H 1.09005 * 110.30749 * 258.13180 * 18 17 16 28 28 H 1.09000 * 110.81280 * 92.09627 * 19 18 17 29 29 H 1.09001 * 110.81471 * 215.41175 * 19 18 17 30 30 H 1.09004 * 110.29935 * 43.99829 * 20 16 15 31 31 H 1.08994 * 110.38185 * 281.90365 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8752 -0.6796 -0.8894 11 7 4.0008 -0.5023 1.2001 12 6 4.0139 -2.6149 -0.0001 13 6 4.3505 -3.2392 1.1867 14 7 4.7850 -4.4841 1.1930 15 6 4.9265 -5.1760 0.0794 16 6 4.6155 -4.6154 -1.1459 17 6 4.1504 -3.3114 -1.1903 18 6 3.8768 -2.9122 -2.6212 19 6 3.8090 -4.2409 -3.4049 20 6 4.6858 -5.1788 -2.5471 21 1 -0.4850 0.8400 -0.0004 22 1 3.6769 -0.9604 2.0388 23 1 5.0073 -0.4321 1.1920 24 1 4.2523 -2.7029 2.1190 25 1 5.2899 -6.1920 0.1248 26 1 2.9267 -2.3828 -2.6912 27 1 4.6867 -2.2896 -3.0016 28 1 2.7841 -4.6084 -3.4563 29 1 4.2267 -4.1226 -4.4047 30 1 4.2864 -6.1928 -2.5674 31 1 5.7141 -5.1708 -2.9083 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260191417.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:08 Heat of formation + Delta-G solvation = 26.566705 kcal Electronic energy + Delta-G solvation = -14580.719320 eV Core-core repulsion = 12247.266709 eV Total energy + Delta-G solvation = -2333.452612 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.33934 -36.32556 -35.26096 -32.01819 -30.32095 -29.41965 -27.20297 -26.45063 -23.35519 -21.66936 -20.94093 -19.44200 -17.02333 -16.35450 -15.89093 -15.19378 -14.87293 -14.29824 -13.86631 -13.39613 -13.14306 -12.69564 -12.56165 -12.42701 -11.86940 -11.44835 -11.24589 -10.93103 -10.88462 -10.72783 -10.46871 -10.01490 -9.42472 -9.04468 -8.60885 -8.57876 -8.17155 -7.75399 -6.06451 -4.17971 1.61841 1.82531 3.52744 3.57495 3.69883 4.26186 4.59671 4.67431 4.77821 4.95354 5.17051 5.19179 5.36373 5.42912 5.58259 5.77510 5.83689 5.87360 5.94987 5.98087 6.10347 6.35039 6.37502 6.40177 6.58859 6.82086 6.97144 7.22896 7.52036 8.05594 8.23568 8.45154 8.60022 8.92518 9.55632 11.02686 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.033182 B = 0.010264 C = 0.008894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.618191 B = 2727.272551 C = 3147.350244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.083 3.917 3 Si 0.937 3.063 4 H -0.279 1.279 5 H -0.318 1.318 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.070 0.930 9 C 0.221 3.779 10 H 0.053 0.947 11 N -0.842 5.842 12 C -0.102 4.102 13 C 0.081 3.919 14 N -0.485 5.485 15 C 0.082 3.918 16 C -0.157 4.157 17 C -0.048 4.048 18 C -0.085 4.085 19 C -0.120 4.120 20 C -0.072 4.072 21 H 0.265 0.735 22 H 0.336 0.664 23 H 0.312 0.688 24 H 0.150 0.850 25 H 0.143 0.857 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.946 -6.900 -4.649 12.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.121 4.121 3 Si 0.769 3.231 4 H -0.205 1.205 5 H -0.248 1.248 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.088 0.912 9 C 0.111 3.889 10 H 0.071 0.929 11 N -0.372 5.372 12 C -0.106 4.106 13 C -0.075 4.075 14 N -0.193 5.193 15 C -0.075 4.075 16 C -0.159 4.159 17 C -0.056 4.056 18 C -0.122 4.122 19 C -0.157 4.157 20 C -0.110 4.110 21 H 0.074 0.926 22 H 0.151 0.849 23 H 0.124 0.876 24 H 0.167 0.833 25 H 0.160 0.840 26 H 0.112 0.888 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.572 -6.563 -4.089 12.305 hybrid contribution 0.547 0.274 -0.398 0.730 sum 10.120 -6.289 -4.488 12.732 Atomic orbital electron populations 1.69953 1.06794 1.27460 1.49135 1.25016 0.94603 1.00056 0.92451 0.85861 0.78340 0.80742 0.78167 1.20534 1.24779 1.20006 1.20658 0.86895 0.94540 1.53389 0.91218 1.18635 0.96500 0.83283 0.90445 0.92900 1.59331 1.13102 1.58562 1.06227 1.21785 0.95498 1.01163 0.92115 1.22443 0.96765 0.90730 0.97604 1.67601 1.13476 1.07969 1.30242 1.21943 0.99320 0.99355 0.86903 1.21526 1.01739 0.96474 0.96147 1.20611 0.95755 0.93769 0.95494 1.21019 1.03508 0.97687 0.89981 1.22323 1.00291 0.94986 0.98131 1.20908 1.00281 0.99206 0.90604 0.92606 0.84940 0.87614 0.83311 0.83999 0.88817 0.90453 0.90904 0.90786 0.90990 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 2 C 0.08 2.37 5.47 -17.82 -0.10 2.27 16 3 Si 0.94 23.39 26.03 -169.99 -4.42 18.96 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.32 -8.04 7.11 56.52 0.40 -7.64 16 6 H -0.27 -6.62 6.54 56.52 0.37 -6.25 16 7 C -0.52 -14.11 9.29 -34.44 -0.32 -14.43 16 8 H 0.07 2.13 7.98 -52.49 -0.42 1.71 16 9 C 0.22 4.99 2.22 -70.01 -0.16 4.83 16 10 H 0.05 1.24 7.00 -51.93 -0.36 0.87 16 11 N -0.84 -17.22 6.37 -6.65 -0.04 -17.27 16 12 C -0.10 -2.08 5.00 -104.49 -0.52 -2.60 16 13 C 0.08 1.58 10.44 -17.53 -0.18 1.39 16 14 N -0.48 -9.12 10.36 -13.22 -0.14 -9.26 16 15 C 0.08 1.37 11.19 -17.52 -0.20 1.17 16 16 C -0.16 -2.58 6.18 -104.26 -0.64 -3.22 16 17 C -0.05 -0.89 6.04 -104.22 -0.63 -1.52 16 18 C -0.09 -1.38 6.38 -26.97 -0.17 -1.55 16 19 C -0.12 -1.54 7.08 -25.25 -0.18 -1.72 16 20 C -0.07 -0.91 6.76 -26.91 -0.18 -1.09 16 21 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 22 H 0.34 6.58 7.23 -39.29 -0.28 6.29 16 23 H 0.31 5.49 9.06 -39.30 -0.36 5.13 16 24 H 0.15 2.66 6.31 -52.48 -0.33 2.33 16 25 H 0.14 1.91 8.06 -52.48 -0.42 1.48 16 26 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 256.34 15.07 3.86 3.86 Total: -1.00 -31.23 256.34 -7.13 -38.35 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -3.88 Total: 8.19 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -3.28 Total: -16.46 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.59 Total: -52.91 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -4.42 Total: 18.96 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -31.23 -7.13 -38.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260191417.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.922 kcal (2) G-P(sol) polarization free energy of solvation -31.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds