Wall clock time and date at job start Mon Mar 30 2020 02:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 11 11 N 1.46902 * 109.47072 * 59.99845 * 9 7 2 12 12 C 1.50703 * 109.46925 * 179.97438 * 9 7 2 13 13 C 1.38259 * 120.45112 * 264.71892 * 12 9 7 14 14 N 1.31859 * 120.70556 * 179.70357 * 13 12 9 15 15 C 1.31861 * 121.78520 * 0.57991 * 14 13 12 16 16 C 1.38296 * 120.75956 * 359.72605 * 15 14 13 17 17 C 1.38513 * 119.04452 * 359.97309 * 16 15 14 18 18 C 1.51052 * 109.87141 * 180.02562 * 17 16 15 19 19 C 1.54414 * 105.15058 * 17.04430 * 18 17 16 20 20 C 1.51181 * 131.27427 * 179.97438 * 16 15 14 21 21 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 22 22 H 1.00903 * 110.99961 * 59.99933 * 11 9 7 23 23 H 1.00891 * 110.99940 * 183.95812 * 11 9 7 24 24 H 1.08003 * 119.64435 * 359.97438 * 13 12 9 25 25 H 1.08003 * 119.62220 * 179.70661 * 15 14 13 26 26 H 1.08989 * 110.30854 * 135.96727 * 18 17 16 27 27 H 1.09005 * 110.30749 * 258.13180 * 18 17 16 28 28 H 1.09000 * 110.81280 * 92.09627 * 19 18 17 29 29 H 1.09001 * 110.81471 * 215.41175 * 19 18 17 30 30 H 1.09004 * 110.29935 * 43.99829 * 20 16 15 31 31 H 1.08994 * 110.38185 * 281.90365 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8752 -0.6796 -0.8894 11 7 4.0008 -0.5023 1.2001 12 6 4.0139 -2.6149 -0.0001 13 6 4.3505 -3.2392 1.1867 14 7 4.7850 -4.4841 1.1930 15 6 4.9265 -5.1760 0.0794 16 6 4.6155 -4.6154 -1.1459 17 6 4.1504 -3.3114 -1.1903 18 6 3.8768 -2.9122 -2.6212 19 6 3.8090 -4.2409 -3.4049 20 6 4.6858 -5.1788 -2.5471 21 1 -0.4850 0.8400 -0.0004 22 1 3.6769 -0.9604 2.0388 23 1 5.0073 -0.4321 1.1920 24 1 4.2523 -2.7029 2.1190 25 1 5.2899 -6.1920 0.1248 26 1 2.9267 -2.3828 -2.6912 27 1 4.6867 -2.2896 -3.0016 28 1 2.7841 -4.6084 -3.4563 29 1 4.2267 -4.1226 -4.4047 30 1 4.2864 -6.1928 -2.5674 31 1 5.7141 -5.1708 -2.9083 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260191417.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:08 Heat of formation + Delta-G solvation = 4.546819 kcal Electronic energy + Delta-G solvation = -14581.674174 eV Core-core repulsion = 12247.266709 eV Total energy + Delta-G solvation = -2334.407466 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.70094 -37.62437 -36.93852 -34.12468 -31.77773 -30.69211 -28.56590 -28.30396 -24.96170 -23.06294 -22.30021 -20.89442 -19.07393 -17.78842 -17.22042 -16.75442 -16.38037 -16.03866 -15.60846 -14.70815 -14.55324 -14.41722 -13.90975 -13.72223 -13.67164 -12.93089 -12.72142 -12.66118 -12.13260 -12.04115 -11.98356 -11.83375 -11.56241 -10.79774 -10.47597 -9.97742 -9.65185 -9.41385 -8.27346 -6.41519 0.23541 0.39395 1.49790 1.56800 1.70014 2.50235 2.85785 3.06833 3.46829 3.53017 3.70818 4.07699 4.09281 4.18385 4.21827 4.22656 4.48960 4.61174 4.81507 4.85953 4.94143 5.04924 5.14352 5.16465 5.26827 5.36017 5.46148 5.58820 5.84826 6.08076 6.40335 6.70076 6.91578 7.04902 7.35130 8.85851 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.033182 B = 0.010264 C = 0.008894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.618191 B = 2727.272551 C = 3147.350244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.029 3.971 3 Si 1.001 2.999 4 H -0.276 1.276 5 H -0.322 1.322 6 H -0.259 1.259 7 C -0.510 4.510 8 H 0.022 0.978 9 C 0.234 3.766 10 H 0.047 0.953 11 N -0.844 5.844 12 C -0.131 4.131 13 C 0.071 3.929 14 N -0.500 5.500 15 C 0.080 3.920 16 C -0.153 4.153 17 C -0.072 4.072 18 C -0.089 4.089 19 C -0.113 4.113 20 C -0.066 4.066 21 H 0.266 0.734 22 H 0.341 0.659 23 H 0.334 0.666 24 H 0.155 0.845 25 H 0.180 0.820 26 H 0.060 0.940 27 H 0.092 0.908 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.337 -7.865 -5.616 15.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.170 4.170 3 Si 0.831 3.169 4 H -0.202 1.202 5 H -0.253 1.253 6 H -0.184 1.184 7 C -0.548 4.548 8 H 0.040 0.960 9 C 0.124 3.876 10 H 0.064 0.936 11 N -0.376 5.376 12 C -0.135 4.135 13 C -0.086 4.086 14 N -0.208 5.208 15 C -0.077 4.077 16 C -0.155 4.155 17 C -0.080 4.080 18 C -0.126 4.126 19 C -0.150 4.150 20 C -0.103 4.103 21 H 0.074 0.926 22 H 0.156 0.844 23 H 0.148 0.852 24 H 0.172 0.828 25 H 0.197 0.803 26 H 0.079 0.921 27 H 0.110 0.890 28 H 0.084 0.916 29 H 0.125 0.875 30 H 0.113 0.887 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.989 -7.540 -5.052 15.037 hybrid contribution -0.187 0.426 -0.110 0.478 sum 11.802 -7.114 -5.162 14.715 Atomic orbital electron populations 1.70083 1.08566 1.28282 1.51612 1.25848 0.95171 1.03558 0.92411 0.84832 0.77446 0.76422 0.78214 1.20218 1.25266 1.18372 1.20809 0.89690 0.92382 1.51962 0.95983 1.18214 0.93269 0.85283 0.90867 0.93552 1.59040 1.14792 1.58160 1.05608 1.21647 0.97805 1.00399 0.93641 1.22517 0.97206 0.91320 0.97510 1.67649 1.14010 1.07673 1.31487 1.22607 0.97976 1.00600 0.86478 1.22007 0.99890 0.95433 0.98127 1.21061 0.95879 0.95046 0.96021 1.21110 1.02216 0.99729 0.89560 1.22355 1.00530 0.92756 0.99375 1.21018 1.01894 0.99802 0.87606 0.92569 0.84397 0.85230 0.82822 0.80340 0.92139 0.88959 0.91568 0.87519 0.88725 0.87878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.36 13.96 21.45 0.30 -59.06 16 2 C 0.03 1.71 5.47 84.65 0.46 2.17 16 3 Si 1.00 48.64 26.03 68.60 1.79 50.43 16 4 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.32 -15.79 7.11 99.48 0.71 -15.08 16 6 H -0.26 -11.80 6.54 99.48 0.65 -11.15 16 7 C -0.51 -28.84 9.29 25.60 0.24 -28.61 16 8 H 0.02 1.42 7.98 -2.92 -0.02 1.39 16 9 C 0.23 10.63 2.22 43.43 0.10 10.72 16 10 H 0.05 2.16 7.00 -2.39 -0.02 2.14 16 11 N -0.84 -33.79 6.37 -174.94 -1.11 -34.90 16 12 C -0.13 -5.36 5.00 -19.78 -0.10 -5.46 16 13 C 0.07 2.71 10.44 84.69 0.88 3.60 16 14 N -0.50 -18.12 10.36 -195.74 -2.03 -20.15 16 15 C 0.08 2.47 11.19 84.70 0.95 3.42 16 16 C -0.15 -4.62 6.18 -19.63 -0.12 -4.74 16 17 C -0.07 -2.61 6.04 -19.61 -0.12 -2.73 16 18 C -0.09 -2.80 6.38 30.44 0.19 -2.61 16 19 C -0.11 -2.56 7.08 31.55 0.22 -2.34 16 20 C -0.07 -1.38 6.76 30.48 0.21 -1.17 16 21 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 22 H 0.34 13.22 7.23 -89.69 -0.65 12.57 16 23 H 0.33 11.18 9.06 -89.70 -0.81 10.36 16 24 H 0.15 5.51 6.31 -2.91 -0.02 5.49 16 25 H 0.18 4.05 8.06 -2.91 -0.02 4.03 16 26 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 28 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -69.39 256.34 1.49 -67.89 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: -0.37 Total: 23.53 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: 2.91 Total: -27.75 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -2.84 Total: -114.11 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 1.79 Total: 50.43 kcal Total: -69.39 1.49 -67.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260191417.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.441 kcal (2) G-P(sol) polarization free energy of solvation -69.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds