Wall clock time and date at job start Mon Mar 30 2020 02:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 110.83053 * 2 1 4 4 C 1.54709 * 110.93320 * 236.25638 * 2 1 3 5 5 O 1.43776 * 102.78812 * 216.58493 * 4 2 1 6 6 C 1.36121 * 109.30228 * 27.57913 * 5 4 2 7 7 C 1.38927 * 111.22351 * 341.24041 * 6 5 4 8 8 C 1.37704 * 120.78001 * 180.83570 * 7 6 5 9 9 C 1.38397 * 119.97670 * 359.41475 * 8 7 6 10 10 C 1.38237 * 119.77017 * 359.93340 * 9 8 7 11 11 C 1.37979 * 120.35298 * 0.20276 * 10 9 8 12 12 C 1.50698 * 119.88587 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.47166 * 265.00074 * 12 11 10 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99902 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99854 * 179.72538 * 15 13 12 18 18 H 1.48498 * 109.46909 * 90.00086 * 17 15 13 19 19 H 1.48497 * 109.46701 * 209.99996 * 17 15 13 20 20 H 1.48500 * 109.46867 * 330.00101 * 17 15 13 21 21 H 1.09003 * 109.46951 * 296.29642 * 1 2 3 22 22 H 1.09000 * 109.47525 * 56.29479 * 1 2 3 23 23 H 1.08999 * 109.47280 * 176.29561 * 1 2 3 24 24 H 1.08996 * 110.74730 * 334.90824 * 4 2 1 25 25 H 1.08999 * 110.74764 * 98.25668 * 4 2 1 26 26 H 1.07999 * 120.01169 * 179.43606 * 8 7 6 27 27 H 1.07999 * 120.11099 * 179.90771 * 9 8 7 28 28 H 1.08004 * 119.82968 * 180.22331 * 10 9 8 29 29 H 1.08998 * 109.46890 * 145.00064 * 12 11 10 30 30 H 1.09002 * 109.46875 * 24.99866 * 12 11 10 31 31 H 0.97001 * 119.99646 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0187 0.0000 4 6 2.0827 -0.8027 -1.2015 5 8 3.2479 -1.4392 -0.6500 6 6 3.0738 -1.6145 0.6886 7 6 2.0718 -0.7860 1.1781 8 6 1.7443 -0.7909 2.5156 9 6 2.4080 -1.6368 3.3871 10 6 3.3976 -2.4754 2.9093 11 6 3.7294 -2.4702 1.5700 12 6 4.8096 -3.3892 1.0605 13 6 6.1214 -2.6487 1.0199 14 1 6.1683 -1.6156 1.3315 15 6 7.2619 -3.2899 0.5850 16 7 7.2048 -4.5477 0.2051 17 14 8.8865 -2.3696 0.5274 18 1 9.5914 -2.5281 1.8248 19 1 9.7290 -2.9207 -0.5643 20 1 8.6304 -0.9287 0.2759 21 1 -0.3633 0.4553 0.9213 22 1 -0.3634 0.5703 -0.8549 23 1 -0.3634 -1.0255 -0.0664 24 1 1.3585 -1.5456 -1.5356 25 1 2.3574 -0.1351 -2.0183 26 1 0.9695 -0.1351 2.8844 27 1 2.1538 -1.6413 4.4367 28 1 3.9137 -3.1385 3.5879 29 1 4.5534 -3.7298 0.0573 30 1 4.8982 -4.2490 1.7246 31 1 8.0073 -4.9989 -0.1006 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260197914.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:54 Heat of formation + Delta-G solvation = -21.237002 kcal Electronic energy + Delta-G solvation = -14363.315271 eV Core-core repulsion = 11995.496984 eV Total energy + Delta-G solvation = -2367.818287 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.62494 -36.92386 -34.18091 -32.87616 -30.73030 -29.10130 -26.85010 -26.31546 -23.37916 -22.01980 -21.34130 -19.36145 -16.87641 -16.26645 -15.76568 -15.63342 -14.92324 -14.40771 -13.83270 -13.13673 -13.09509 -12.62377 -12.52514 -12.00593 -11.78980 -11.72770 -11.32108 -11.03774 -10.92489 -10.76975 -10.42332 -10.38736 -10.24732 -9.46021 -9.33472 -8.34225 -7.98132 -7.37914 -5.95852 -3.98426 1.92678 2.08548 3.35367 3.40923 3.46366 3.90603 4.32900 4.54042 4.63360 4.88048 5.11714 5.32200 5.38715 5.45621 5.55551 5.64821 5.72449 5.81541 5.88779 6.08006 6.16713 6.20579 6.34365 6.70978 6.90651 7.02641 7.15280 7.31242 7.61366 7.83994 7.92709 7.99643 8.40907 9.05251 9.64023 11.14259 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.035604 B = 0.008475 C = 0.007608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.240545 B = 3303.212692 C = 3679.524644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.080 4.080 3 H 0.089 0.911 4 C 0.051 3.949 5 O -0.289 6.289 6 C 0.106 3.894 7 C -0.180 4.180 8 C -0.097 4.097 9 C -0.152 4.152 10 C -0.094 4.094 11 C -0.053 4.053 12 C 0.053 3.947 13 C -0.504 4.504 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.896 5.896 17 Si 0.894 3.106 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.059 0.941 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.070 0.930 25 H 0.098 0.902 26 H 0.111 0.889 27 H 0.117 0.883 28 H 0.126 0.874 29 H 0.031 0.969 30 H 0.028 0.972 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.408 7.571 1.129 14.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.098 4.098 3 H 0.107 0.893 4 C -0.025 4.025 5 O -0.202 6.202 6 C 0.061 3.939 7 C -0.181 4.181 8 C -0.115 4.115 9 C -0.171 4.171 10 C -0.112 4.112 11 C -0.054 4.054 12 C 0.016 3.984 13 C -0.543 4.543 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.535 5.535 17 Si 0.722 3.278 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.078 0.922 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.116 0.884 26 H 0.129 0.871 27 H 0.135 0.865 28 H 0.144 0.856 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.114 7.369 0.893 14.208 hybrid contribution 0.834 0.601 -0.047 1.029 sum -11.280 7.970 0.846 13.837 Atomic orbital electron populations 1.21692 0.93642 1.02180 1.01802 1.21325 0.96565 0.99466 0.92456 0.89252 1.23864 0.87083 0.95401 0.96125 1.86972 1.37585 1.76823 1.18831 1.19407 0.95557 0.95089 0.83848 1.20646 1.01631 1.00725 0.95082 1.19976 1.00420 0.99888 0.91247 1.20902 0.98567 0.98734 0.98865 1.20833 0.96879 0.99219 0.94237 1.20012 0.97488 0.96194 0.91712 1.18256 0.90232 0.92975 0.96918 1.21039 0.92092 0.97783 1.43364 0.92691 1.24988 0.99054 0.94939 0.95335 1.69961 1.28829 1.10344 1.44414 0.86551 0.83506 0.80112 0.77637 1.20632 1.21169 1.19863 0.92200 0.92425 0.92279 0.91150 0.88404 0.87101 0.86497 0.85619 0.95108 0.95352 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.19 37.16 0.34 -1.13 16 2 C -0.08 -1.13 3.73 -90.41 -0.34 -1.46 16 3 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 4 C 0.05 0.77 7.56 38.06 0.29 1.06 16 5 O -0.29 -6.23 11.05 -20.13 -0.22 -6.45 16 6 C 0.11 2.30 6.75 -38.95 -0.26 2.04 16 7 C -0.18 -3.20 5.69 -104.10 -0.59 -3.79 16 8 C -0.10 -1.58 9.93 -39.72 -0.39 -1.97 16 9 C -0.15 -2.55 10.07 -39.52 -0.40 -2.95 16 10 C -0.09 -1.86 9.64 -39.68 -0.38 -2.25 16 11 C -0.05 -1.24 5.09 -104.34 -0.53 -1.77 16 12 C 0.05 1.45 5.06 -29.04 -0.15 1.30 16 13 C -0.50 -14.88 9.09 -34.44 -0.31 -15.19 16 14 H 0.05 1.62 7.74 -52.49 -0.41 1.22 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 17 Si 0.89 22.36 29.54 -169.99 -5.02 17.33 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 21 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.66 8.07 -51.93 -0.42 0.24 16 24 H 0.07 0.96 7.86 -51.93 -0.41 0.55 16 25 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 27 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 28 H 0.13 2.36 8.06 -52.48 -0.42 1.93 16 29 H 0.03 0.90 8.12 -51.93 -0.42 0.48 16 30 H 0.03 0.79 8.05 -51.93 -0.42 0.37 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 267.33 15.07 4.03 4.03 Total: -1.00 -32.29 267.33 -7.47 -39.76 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: -4.17 Total: -3.49 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: -2.83 Total: -24.52 kcal Atomic # 7 Polarization: -27.39 SS G_CDS: 0.74 Total: -26.66 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.22 Total: -6.45 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.29 -7.47 -39.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260197914.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.522 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds