Wall clock time and date at job start Mon Mar 30 2020 02:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 110.83053 * 2 1 4 4 C 1.54709 * 110.93320 * 236.25638 * 2 1 3 5 5 O 1.43776 * 102.78812 * 216.58493 * 4 2 1 6 6 C 1.36121 * 109.30228 * 27.57913 * 5 4 2 7 7 C 1.38927 * 111.22351 * 341.24041 * 6 5 4 8 8 C 1.37704 * 120.78001 * 180.83570 * 7 6 5 9 9 C 1.38397 * 119.97670 * 359.41475 * 8 7 6 10 10 C 1.38237 * 119.77017 * 359.93340 * 9 8 7 11 11 C 1.37979 * 120.35298 * 0.20276 * 10 9 8 12 12 C 1.50698 * 119.88587 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.47166 * 265.00074 * 12 11 10 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99902 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99854 * 179.72538 * 15 13 12 18 18 H 1.48498 * 109.46909 * 90.00086 * 17 15 13 19 19 H 1.48497 * 109.46701 * 209.99996 * 17 15 13 20 20 H 1.48500 * 109.46867 * 330.00101 * 17 15 13 21 21 H 1.09003 * 109.46951 * 296.29642 * 1 2 3 22 22 H 1.09000 * 109.47525 * 56.29479 * 1 2 3 23 23 H 1.08999 * 109.47280 * 176.29561 * 1 2 3 24 24 H 1.08996 * 110.74730 * 334.90824 * 4 2 1 25 25 H 1.08999 * 110.74764 * 98.25668 * 4 2 1 26 26 H 1.07999 * 120.01169 * 179.43606 * 8 7 6 27 27 H 1.07999 * 120.11099 * 179.90771 * 9 8 7 28 28 H 1.08004 * 119.82968 * 180.22331 * 10 9 8 29 29 H 1.08998 * 109.46890 * 145.00064 * 12 11 10 30 30 H 1.09002 * 109.46875 * 24.99866 * 12 11 10 31 31 H 0.97001 * 119.99646 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0187 0.0000 4 6 2.0827 -0.8027 -1.2015 5 8 3.2479 -1.4392 -0.6500 6 6 3.0738 -1.6145 0.6886 7 6 2.0718 -0.7860 1.1781 8 6 1.7443 -0.7909 2.5156 9 6 2.4080 -1.6368 3.3871 10 6 3.3976 -2.4754 2.9093 11 6 3.7294 -2.4702 1.5700 12 6 4.8096 -3.3892 1.0605 13 6 6.1214 -2.6487 1.0199 14 1 6.1683 -1.6156 1.3315 15 6 7.2619 -3.2899 0.5850 16 7 7.2048 -4.5477 0.2051 17 14 8.8865 -2.3696 0.5274 18 1 9.5914 -2.5281 1.8248 19 1 9.7290 -2.9207 -0.5643 20 1 8.6304 -0.9287 0.2759 21 1 -0.3633 0.4553 0.9213 22 1 -0.3634 0.5703 -0.8549 23 1 -0.3634 -1.0255 -0.0664 24 1 1.3585 -1.5456 -1.5356 25 1 2.3574 -0.1351 -2.0183 26 1 0.9695 -0.1351 2.8844 27 1 2.1538 -1.6413 4.4367 28 1 3.9137 -3.1385 3.5879 29 1 4.5534 -3.7298 0.0573 30 1 4.8982 -4.2490 1.7246 31 1 8.0073 -4.9989 -0.1006 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260197914.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:54 Heat of formation + Delta-G solvation = -41.066273 kcal Electronic energy + Delta-G solvation = -14364.175133 eV Core-core repulsion = 11995.496984 eV Total energy + Delta-G solvation = -2368.678149 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.02329 -38.40493 -35.80362 -34.67214 -32.47794 -30.47724 -28.78723 -27.35777 -25.33627 -23.43273 -22.81821 -20.77034 -18.60359 -18.20298 -17.24910 -17.01042 -16.56715 -16.08447 -15.11211 -14.60104 -14.49119 -14.28303 -14.12495 -13.42198 -13.29511 -13.18146 -12.84200 -12.77951 -12.58567 -12.34701 -12.01066 -11.83915 -11.72401 -11.52390 -11.15926 -10.62792 -9.49241 -8.91236 -8.21185 -6.35196 0.48025 0.60236 1.34908 1.37747 1.49117 2.37472 2.57091 2.91449 3.07919 3.46919 3.72433 4.00262 4.16210 4.28469 4.37601 4.55007 4.57246 4.65002 4.76240 4.79233 4.96003 5.07950 5.18199 5.22973 5.33116 5.37866 5.57740 5.61066 5.72841 5.83846 5.99143 6.13940 6.46095 6.75575 7.32339 8.87953 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.035604 B = 0.008475 C = 0.007608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.240545 B = 3303.212692 C = 3679.524644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.072 4.072 3 H 0.103 0.897 4 C 0.039 3.961 5 O -0.335 6.335 6 C 0.073 3.927 7 C -0.175 4.175 8 C -0.085 4.085 9 C -0.140 4.140 10 C -0.107 4.107 11 C -0.099 4.099 12 C 0.066 3.934 13 C -0.525 4.525 14 H 0.047 0.953 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.968 3.032 18 H -0.265 1.265 19 H -0.276 1.276 20 H -0.270 1.270 21 H 0.075 0.925 22 H 0.082 0.918 23 H 0.052 0.948 24 H 0.081 0.919 25 H 0.122 0.878 26 H 0.158 0.842 27 H 0.159 0.841 28 H 0.124 0.876 29 H -0.010 1.010 30 H 0.005 0.995 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.902 10.187 2.054 17.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.090 4.090 3 H 0.121 0.879 4 C -0.035 4.035 5 O -0.249 6.249 6 C 0.028 3.972 7 C -0.176 4.176 8 C -0.103 4.103 9 C -0.158 4.158 10 C -0.125 4.125 11 C -0.100 4.100 12 C 0.029 3.971 13 C -0.563 4.563 14 H 0.066 0.934 15 C -0.195 4.195 16 N -0.572 5.572 17 Si 0.792 3.208 18 H -0.190 1.190 19 H -0.201 1.201 20 H -0.194 1.194 21 H 0.094 0.906 22 H 0.101 0.899 23 H 0.071 0.929 24 H 0.099 0.901 25 H 0.140 0.860 26 H 0.175 0.825 27 H 0.176 0.824 28 H 0.142 0.858 29 H 0.008 0.992 30 H 0.023 0.977 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.628 9.987 1.823 16.994 hybrid contribution 1.206 -0.208 -0.344 1.271 sum -12.422 9.779 1.478 15.878 Atomic orbital electron populations 1.21680 0.90589 1.02506 1.03842 1.21421 0.98875 0.99041 0.89710 0.87916 1.24271 0.85796 0.96110 0.97316 1.86892 1.40823 1.77867 1.19366 1.19658 0.97110 0.96311 0.84112 1.21160 0.99908 0.99707 0.96843 1.20538 1.00269 0.99221 0.90277 1.21327 0.96528 0.96900 1.01027 1.20941 0.98273 1.00410 0.92880 1.19840 0.98433 0.97842 0.93894 1.17911 0.91740 0.93193 0.94236 1.21323 0.93602 0.97613 1.43770 0.93433 1.25968 1.03178 0.95851 0.94541 1.70091 1.30195 1.11982 1.44940 0.85411 0.78399 0.78607 0.78428 1.19033 1.20149 1.19430 0.90617 0.89895 0.92900 0.90124 0.86009 0.82483 0.82355 0.85767 0.99183 0.97692 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 9.19 71.98 0.66 -1.57 16 2 C -0.07 -1.83 3.73 -10.66 -0.04 -1.87 16 3 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 4 C 0.04 1.16 7.56 72.56 0.55 1.71 16 5 O -0.33 -15.04 11.05 -94.93 -1.05 -16.09 16 6 C 0.07 3.25 6.75 22.68 0.15 3.40 16 7 C -0.18 -5.90 5.69 -19.53 -0.11 -6.01 16 8 C -0.09 -2.44 9.93 22.18 0.22 -2.22 16 9 C -0.14 -4.29 10.07 22.31 0.22 -4.07 16 10 C -0.11 -4.32 9.64 22.21 0.21 -4.10 16 11 C -0.10 -4.87 5.09 -19.68 -0.10 -4.97 16 12 C 0.07 3.91 5.06 29.10 0.15 4.05 16 13 C -0.53 -32.60 9.09 25.60 0.23 -32.37 16 14 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 15 C 0.00 0.14 5.46 84.66 0.46 0.60 16 16 N -0.93 -59.31 13.29 21.45 0.28 -59.02 16 17 Si 0.97 46.80 29.54 68.60 2.03 48.83 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 21 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.05 0.99 8.07 -2.39 -0.02 0.97 16 24 H 0.08 2.13 7.86 -2.39 -0.02 2.11 16 25 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 26 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 27 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 28 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 29 H -0.01 -0.66 8.12 -2.39 -0.02 -0.68 16 30 H 0.00 0.29 8.05 -2.39 -0.02 0.27 16 31 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -75.05 267.33 4.98 -70.07 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: 1.10 Total: 3.63 kcal Atomic # 6 Polarization: -50.03 SS G_CDS: 2.61 Total: -47.42 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.28 Total: -59.02 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -1.05 Total: -16.09 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -75.05 4.98 -70.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260197914.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.003 kcal (2) G-P(sol) polarization free energy of solvation -75.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds