Wall clock time and date at job start Mon Mar 30 2020 02:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 110.83399 * 2 1 4 4 C 1.54714 * 110.97194 * 236.26597 * 2 1 3 5 5 O 1.43777 * 102.78274 * 216.54803 * 4 2 1 6 6 C 1.36136 * 109.23976 * 27.75205 * 5 4 2 7 7 C 1.39281 * 129.88745 * 161.56315 * 6 5 4 8 8 C 1.37926 * 120.24165 * 179.05522 * 7 6 5 9 9 C 1.50696 * 119.82731 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.47259 * 90.00152 * 9 8 7 11 11 H 1.08005 * 119.99758 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00102 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47057 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47389 * 300.00068 * 14 12 10 17 17 H 1.48504 * 109.47102 * 60.00417 * 14 12 10 18 18 C 1.38294 * 120.34807 * 0.30127 * 8 7 6 19 19 C 1.38341 * 119.76682 * 359.58570 * 18 8 7 20 20 C 1.37747 * 119.97813 * 0.53262 * 19 18 8 21 21 H 1.08999 * 109.47020 * 296.29334 * 1 2 3 22 22 H 1.09005 * 109.46827 * 56.28925 * 1 2 3 23 23 H 1.08995 * 109.47319 * 176.28968 * 1 2 3 24 24 H 1.08995 * 110.74811 * 334.86951 * 4 2 1 25 25 H 1.08995 * 110.75045 * 98.04003 * 4 2 1 26 26 H 1.08010 * 119.88070 * 359.08126 * 7 6 5 27 27 H 1.09001 * 109.47545 * 330.00492 * 9 8 7 28 28 H 1.09006 * 109.47511 * 210.00157 * 9 8 7 29 29 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 30 30 H 1.07999 * 120.10949 * 179.84740 * 18 8 7 31 31 H 1.07998 * 120.01246 * 180.24646 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9176 1.0187 0.0000 4 6 2.0837 -0.8023 -1.2014 5 8 3.2493 -1.4377 -0.6495 6 6 3.0720 -1.6159 0.6885 7 6 3.7348 -2.4643 1.5722 8 6 3.4025 -2.4700 2.9108 9 6 4.1261 -3.3913 3.8587 10 6 5.3347 -2.6869 4.4194 11 1 5.5564 -1.6733 4.1195 12 6 6.1574 -3.3364 5.3150 13 7 5.8878 -4.5708 5.6798 14 14 7.6559 -2.4634 6.0093 15 1 8.3689 -3.3712 6.9435 16 1 8.5650 -2.0815 4.8989 17 1 7.2246 -1.2434 6.7379 18 6 2.4048 -1.6389 3.3866 19 6 1.7433 -0.7916 2.5158 20 6 2.0719 -0.7860 1.1782 21 1 -0.3633 0.4552 0.9213 22 1 -0.3633 0.5704 -0.8549 23 1 -0.3634 -1.0254 -0.0665 24 1 1.3602 -1.5459 -1.5355 25 1 2.3550 -0.1349 -2.0193 26 1 4.5122 -3.1197 1.2080 27 1 4.4430 -4.2868 3.3243 28 1 3.4585 -3.6716 4.6736 29 1 5.1099 -5.0242 5.3190 30 1 2.1460 -1.6484 4.4351 31 1 0.9663 -0.1381 2.8839 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260204760.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:57 Heat of formation + Delta-G solvation = -27.786891 kcal Electronic energy + Delta-G solvation = -14096.363715 eV Core-core repulsion = 11728.261404 eV Total energy + Delta-G solvation = -2368.102312 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.82163 -37.29694 -34.18628 -33.26319 -30.47165 -29.60413 -26.67050 -26.33804 -23.34508 -22.34417 -20.88636 -20.21086 -17.07524 -16.41738 -16.20587 -15.82017 -14.86706 -14.08704 -13.72500 -13.45228 -13.27638 -13.14905 -12.77087 -12.32829 -12.00533 -11.60456 -11.38128 -11.19442 -10.97138 -10.66356 -10.52911 -10.45170 -10.11597 -9.84606 -8.92110 -8.38037 -8.06080 -7.56424 -6.38901 -4.10186 1.89766 1.93134 3.44639 3.46407 3.57621 3.65183 4.24978 4.48828 4.55658 4.72202 4.95605 5.17553 5.31504 5.36273 5.42336 5.49583 5.68451 5.77690 5.84113 6.00279 6.05620 6.06947 6.20510 6.56300 6.85058 6.92810 6.96364 7.10404 7.19994 7.61608 7.69955 8.10392 8.42448 8.82616 9.60515 11.00146 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.050262 B = 0.006514 C = 0.006331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.943396 B = 4297.141113 C = 4421.749721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.077 4.077 3 H 0.089 0.911 4 C 0.055 3.945 5 O -0.310 6.310 6 C 0.099 3.901 7 C -0.139 4.139 8 C 0.005 3.995 9 C 0.035 3.965 10 C -0.593 4.593 11 H 0.051 0.949 12 C 0.017 3.983 13 N -0.911 5.911 14 Si 1.071 2.929 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.287 1.287 18 C -0.150 4.150 19 C -0.070 4.070 20 C -0.200 4.200 21 H 0.061 0.939 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.099 0.901 26 H 0.123 0.877 27 H 0.021 0.979 28 H 0.023 0.977 29 H 0.269 0.731 30 H 0.123 0.877 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.882 8.108 -10.449 16.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.095 4.095 3 H 0.107 0.893 4 C -0.020 4.020 5 O -0.224 6.224 6 C 0.054 3.946 7 C -0.158 4.158 8 C 0.005 3.995 9 C -0.001 4.001 10 C -0.631 4.631 11 H 0.070 0.930 12 C -0.186 4.186 13 N -0.547 5.547 14 Si 0.898 3.102 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.214 1.214 18 C -0.169 4.169 19 C -0.088 4.088 20 C -0.201 4.201 21 H 0.080 0.920 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.117 0.883 26 H 0.141 0.859 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.079 0.921 30 H 0.141 0.859 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.410 7.858 -9.575 14.972 hybrid contribution -1.426 0.385 -1.085 1.833 sum -9.836 8.243 -10.661 16.684 Atomic orbital electron populations 1.21700 0.93536 1.02219 1.01994 1.21276 0.96706 0.99355 0.92152 0.89300 1.23842 0.86560 0.95459 0.96176 1.86793 1.38836 1.77551 1.19232 1.19534 0.96303 0.95491 0.83251 1.20195 1.02851 1.00723 0.92034 1.20172 0.91864 0.94764 0.92699 1.18504 0.95276 0.93659 0.92703 1.21883 1.10240 1.01767 1.29183 0.93039 1.25885 1.01918 0.96120 0.94721 1.70792 1.28858 1.11606 1.43396 0.83518 0.75212 0.75071 0.76366 1.20683 1.21345 1.21364 1.20965 0.98134 0.98308 0.99447 1.20151 0.99162 0.98393 0.91099 1.20463 1.02699 1.01819 0.95110 0.91991 0.92415 0.92271 0.91006 0.88300 0.85947 0.96037 0.95881 0.92070 0.85875 0.86782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.20 37.15 0.34 -1.02 16 2 C -0.08 -0.97 3.73 -90.41 -0.34 -1.31 16 3 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 4 C 0.05 0.68 7.55 38.06 0.29 0.97 16 5 O -0.31 -5.40 11.10 -20.17 -0.22 -5.62 16 6 C 0.10 1.89 7.04 -38.96 -0.27 1.62 16 7 C -0.14 -2.99 9.70 -39.31 -0.38 -3.37 16 8 C 0.01 0.12 5.06 -104.72 -0.53 -0.41 16 9 C 0.04 0.92 4.41 -29.03 -0.13 0.79 16 10 C -0.59 -17.01 9.09 -34.44 -0.31 -17.32 16 11 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 12 C 0.02 0.50 5.46 -17.82 -0.10 0.41 16 13 N -0.91 -27.71 13.65 55.43 0.76 -26.96 16 14 Si 1.07 25.47 29.90 -169.99 -5.08 20.38 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 18 C -0.15 -3.00 9.71 -39.52 -0.38 -3.38 16 19 C -0.07 -1.20 9.93 -39.72 -0.39 -1.59 16 20 C -0.20 -3.39 5.69 -104.10 -0.59 -3.98 16 21 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.61 8.07 -51.93 -0.42 0.19 16 24 H 0.07 0.79 7.87 -51.93 -0.41 0.38 16 25 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.12 2.62 8.06 -52.48 -0.42 2.20 16 27 H 0.02 0.57 7.95 -51.93 -0.41 0.16 16 28 H 0.02 0.61 7.95 -51.93 -0.41 0.20 16 29 H 0.27 8.11 7.22 -40.82 -0.29 7.81 16 30 H 0.12 2.35 8.06 -52.49 -0.42 1.92 16 31 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 266.07 15.07 4.01 4.01 Total: -1.00 -31.40 266.07 -7.45 -38.86 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -4.11 Total: -2.07 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: -2.80 Total: -28.60 kcal Atomic # 7 Polarization: -27.71 SS G_CDS: 0.76 Total: -26.96 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.22 Total: -5.62 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.38 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.40 -7.45 -38.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260204760.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.069 kcal (2) G-P(sol) polarization free energy of solvation -31.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds