Wall clock time and date at job start Mon Mar 30 2020 02:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 110.86053 * 2 1 4 4 C 1.54711 * 110.93799 * 123.72499 * 2 1 3 5 5 O 1.43771 * 102.77705 * 143.43740 * 4 2 1 6 6 C 1.36136 * 109.23844 * 332.22101 * 5 4 2 7 7 C 1.39282 * 129.89664 * 199.14895 * 6 5 4 8 8 C 1.37935 * 120.23723 * 180.76960 * 7 6 5 9 9 C 1.50703 * 119.82197 * 179.77240 * 8 7 6 10 10 C 1.50701 * 109.47064 * 269.72110 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47094 * 90.00289 * 14 12 10 16 16 H 1.48505 * 109.47195 * 210.00171 * 14 12 10 17 17 H 1.48493 * 109.47449 * 330.00136 * 14 12 10 18 18 C 1.38287 * 120.35362 * 359.49407 * 8 7 6 19 19 C 1.38346 * 119.76248 * 0.08719 * 18 8 7 20 20 C 1.37737 * 119.98452 * 359.97438 * 19 18 8 21 21 H 1.08996 * 109.47526 * 183.73123 * 1 2 3 22 22 H 1.09002 * 109.47527 * 303.73047 * 1 2 3 23 23 H 1.08999 * 109.47548 * 63.72619 * 1 2 3 24 24 H 1.08994 * 110.74780 * 25.11561 * 4 2 1 25 25 H 1.09000 * 110.75190 * 261.75900 * 4 2 1 26 26 H 1.07997 * 119.88085 * 0.52978 * 7 6 5 27 27 H 1.09002 * 109.47152 * 149.72203 * 9 8 7 28 28 H 1.09001 * 109.46980 * 29.72304 * 9 8 7 29 29 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 30 30 H 1.07997 * 120.11852 * 180.02562 * 18 8 7 31 31 H 1.08005 * 120.00631 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9181 1.0186 0.0000 4 6 2.0828 -0.8022 1.2018 5 8 3.2483 -1.4384 0.6503 6 6 3.0709 -1.6172 -0.6875 7 6 3.7244 -2.4757 -1.5684 8 6 3.3915 -2.4826 -2.9070 9 6 4.1082 -3.4116 -3.8527 10 6 5.3178 -2.7150 -4.4208 11 1 5.5452 -1.7012 -4.1261 12 6 6.1349 -3.3724 -5.3159 13 7 5.8583 -4.6072 -5.6743 14 14 7.6347 -2.5093 -6.0194 15 1 8.8074 -2.7624 -5.1443 16 1 7.9121 -3.0306 -7.3820 17 1 7.3769 -1.0486 -6.0913 18 6 2.3997 -1.6457 -3.3847 19 6 1.7399 -0.7962 -2.5147 20 6 2.0715 -0.7867 -1.1779 21 1 -0.3634 -1.0254 0.0669 22 1 -0.3634 0.5706 0.8547 23 1 -0.3634 0.4549 -0.9215 24 1 1.3588 -1.5454 1.5358 25 1 2.3573 -0.1345 2.0184 26 1 4.4972 -3.1355 -1.2028 27 1 3.4368 -3.6931 -4.6639 28 1 4.4230 -4.3058 -3.3147 29 1 6.4330 -5.0695 -6.3044 30 1 2.1418 -1.6545 -4.4334 31 1 0.9643 -0.1412 -2.8835 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260204769.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:59 Heat of formation + Delta-G solvation = -41.713100 kcal Electronic energy + Delta-G solvation = -14067.976514 eV Core-core repulsion = 11699.270317 eV Total energy + Delta-G solvation = -2368.706197 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.06347 -38.70584 -35.52616 -34.76414 -32.26313 -31.01669 -28.63170 -27.38633 -25.32379 -23.74638 -22.09958 -21.43566 -18.56236 -17.92655 -17.47020 -17.05239 -16.62417 -16.00085 -15.21236 -14.62658 -14.52849 -14.42976 -14.11992 -13.56259 -13.36825 -13.21626 -12.91857 -12.59965 -12.53256 -12.23293 -12.05771 -11.85987 -11.81405 -11.32174 -11.30657 -10.62600 -9.60932 -8.98369 -8.22113 -6.35792 0.47068 0.49884 1.39054 1.40343 1.51932 2.38418 2.39254 2.86662 3.08744 3.47015 3.70103 3.97069 4.14837 4.30702 4.32539 4.56077 4.56893 4.62958 4.67236 4.78934 4.94383 5.11438 5.15944 5.27011 5.32827 5.37883 5.44655 5.53195 5.70702 5.74559 6.01154 6.13270 6.34428 6.75956 7.32695 8.87359 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.050681 B = 0.006482 C = 0.006297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.341714 B = 4318.417215 C = 4445.794370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.072 4.072 3 H 0.104 0.896 4 C 0.046 3.954 5 O -0.330 6.330 6 C 0.089 3.911 7 C -0.163 4.163 8 C -0.027 4.027 9 C 0.057 3.943 10 C -0.531 4.531 11 H 0.053 0.947 12 C 0.006 3.994 13 N -0.929 5.929 14 Si 0.967 3.033 15 H -0.273 1.273 16 H -0.276 1.276 17 H -0.265 1.265 18 C -0.160 4.160 19 C -0.061 4.061 20 C -0.193 4.193 21 H 0.053 0.947 22 H 0.085 0.915 23 H 0.067 0.933 24 H 0.086 0.914 25 H 0.132 0.868 26 H 0.106 0.894 27 H 0.013 0.987 28 H 0.002 0.998 29 H 0.267 0.733 30 H 0.127 0.873 31 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.759 10.297 11.166 18.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.090 4.090 3 H 0.122 0.878 4 C -0.028 4.028 5 O -0.245 6.245 6 C 0.044 3.956 7 C -0.182 4.182 8 C -0.027 4.027 9 C 0.020 3.980 10 C -0.569 4.569 11 H 0.071 0.929 12 C -0.192 4.192 13 N -0.569 5.569 14 Si 0.791 3.209 15 H -0.198 1.198 16 H -0.201 1.201 17 H -0.190 1.190 18 C -0.179 4.179 19 C -0.078 4.078 20 C -0.193 4.193 21 H 0.072 0.928 22 H 0.104 0.896 23 H 0.086 0.914 24 H 0.104 0.896 25 H 0.150 0.850 26 H 0.124 0.876 27 H 0.031 0.969 28 H 0.020 0.980 29 H 0.076 0.924 30 H 0.145 0.855 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.532 10.097 11.218 18.404 hybrid contribution 1.042 -0.243 -0.646 1.250 sum -9.490 9.854 10.572 17.289 Atomic orbital electron populations 1.21701 0.91120 1.02557 1.03657 1.21424 0.98606 0.99258 0.89689 0.87761 1.24295 0.85461 0.96181 0.96821 1.86768 1.41323 1.78046 1.18327 1.19597 0.96517 0.95313 0.84127 1.20124 1.03820 1.01721 0.92537 1.20081 0.93804 0.96072 0.92786 1.18125 0.94318 0.93005 0.92560 1.21341 1.09770 0.99976 1.25806 0.92892 1.25922 1.01133 0.95591 0.96595 1.70074 1.39952 1.12532 1.34327 0.85419 0.78823 0.78898 0.77771 1.19841 1.20123 1.18975 1.21087 0.97971 0.98513 1.00281 1.20475 0.98976 0.97568 0.90809 1.21034 1.01115 1.00950 0.96232 0.92801 0.89611 0.91385 0.89578 0.84989 0.87620 0.96885 0.97961 0.92441 0.85540 0.82917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 9.19 71.98 0.66 -1.37 16 2 C -0.07 -1.52 3.73 -10.66 -0.04 -1.56 16 3 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 4 C 0.05 0.99 7.55 72.57 0.55 1.54 16 5 O -0.33 -11.03 11.10 -95.10 -1.06 -12.09 16 6 C 0.09 3.37 7.04 22.68 0.16 3.53 16 7 C -0.16 -7.26 9.70 22.45 0.22 -7.04 16 8 C -0.03 -1.28 5.06 -19.92 -0.10 -1.38 16 9 C 0.06 3.15 5.09 29.10 0.15 3.30 16 10 C -0.53 -31.25 9.09 25.60 0.23 -31.01 16 11 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 12 C 0.01 0.34 5.46 84.66 0.46 0.81 16 13 N -0.93 -56.73 13.29 21.45 0.28 -56.45 16 14 Si 0.97 45.06 29.54 68.60 2.03 47.08 16 15 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 16 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 C -0.16 -6.37 9.71 22.31 0.22 -6.15 16 19 C -0.06 -1.93 9.92 22.18 0.22 -1.71 16 20 C -0.19 -6.05 5.69 -19.53 -0.11 -6.16 16 21 H 0.05 0.90 8.07 -2.39 -0.02 0.88 16 22 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 24 H 0.09 1.60 7.86 -2.39 -0.02 1.58 16 25 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 27 H 0.01 0.74 8.08 -2.39 -0.02 0.72 16 28 H 0.00 0.12 8.08 -2.39 -0.02 0.10 16 29 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 30 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 31 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -68.50 267.37 4.97 -63.52 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: 1.10 Total: 5.13 kcal Atomic # 6 Polarization: -49.82 SS G_CDS: 2.62 Total: -47.20 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.28 Total: -56.45 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -1.06 Total: -12.09 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -68.50 4.97 -63.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260204769.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.809 kcal (2) G-P(sol) polarization free energy of solvation -68.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds