Wall clock time and date at job start Mon Mar 30 2020 02:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99917 * 2 1 4 4 H 1.48498 * 109.47036 * 240.00327 * 3 2 1 5 5 H 1.48500 * 109.46831 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47009 * 120.00101 * 3 2 1 7 7 C 1.37879 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99754 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00029 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47556 * 59.99494 * 9 7 2 11 11 N 1.46905 * 109.46910 * 299.99533 * 9 7 2 12 12 C 1.50700 * 109.47079 * 179.97438 * 9 7 2 13 13 C 1.38227 * 120.50194 * 79.72176 * 12 9 7 14 14 N 1.31686 * 120.79567 * 179.70783 * 13 12 9 15 15 C 1.32301 * 122.03570 * 0.56003 * 14 13 12 16 16 C 1.38171 * 120.26266 * 359.74689 * 15 14 13 17 17 C 1.38578 * 120.50523 * 259.99919 * 12 9 7 18 18 C 1.51227 * 109.95187 * 179.97438 * 16 15 14 19 19 C 1.54370 * 105.11952 * 342.87431 * 18 16 15 20 20 C 1.51471 * 130.14205 * 179.74790 * 15 14 13 21 21 H 0.96999 * 120.00171 * 359.97438 * 1 2 3 22 22 H 1.00901 * 110.99869 * 300.00472 * 11 9 7 23 23 H 1.00896 * 110.99543 * 63.95595 * 11 9 7 24 24 H 1.07994 * 119.60299 * 359.96950 * 13 12 9 25 25 H 1.08000 * 120.71855 * 0.02562 * 17 12 9 26 26 H 1.08998 * 110.31534 * 101.78521 * 18 16 15 27 27 H 1.08997 * 110.31109 * 223.97063 * 18 16 15 28 28 H 1.08997 * 110.82721 * 268.06763 * 19 18 16 29 29 H 1.08998 * 110.99063 * 144.59198 * 19 18 16 30 30 H 1.08998 * 110.30008 * 316.15423 * 20 15 14 31 31 H 1.09002 * 110.29542 * 78.19677 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6246 -2.5563 -0.8919 11 7 0.4061 -2.5778 1.1975 12 6 2.2304 -3.6446 -0.0027 13 6 2.8478 -4.0408 1.1688 14 7 3.7001 -5.0446 1.1756 15 6 4.0120 -5.7079 0.0741 16 6 3.4371 -5.3616 -1.1336 17 6 2.5299 -4.3129 -1.1791 18 6 3.9560 -6.2648 -2.2299 19 6 5.2305 -6.9129 -1.6482 20 6 4.9593 -6.8721 -0.1295 21 1 -0.4850 0.8400 0.0004 22 1 0.9639 -2.5269 2.0368 23 1 -0.3012 -1.8583 1.1891 24 1 2.6254 -3.5236 2.0904 25 1 2.0674 -4.0235 -2.1112 26 1 3.2182 -7.0303 -2.4705 27 1 4.1998 -5.6809 -3.1174 28 1 6.1135 -6.3254 -1.8995 29 1 5.3393 -7.9405 -1.9951 30 1 5.8877 -6.7042 0.4165 31 1 4.4921 -7.8013 0.1970 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260241481.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:09 Heat of formation + Delta-G solvation = 17.963748 kcal Electronic energy + Delta-G solvation = -14227.002183 eV Core-core repulsion = 11893.176520 eV Total energy + Delta-G solvation = -2333.825664 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.11492 -36.37954 -34.47364 -32.10375 -30.94138 -28.31808 -27.57192 -25.83056 -22.94883 -22.61126 -20.59139 -19.51728 -16.65916 -16.00478 -15.87246 -15.32018 -14.85916 -14.06114 -13.30321 -13.17613 -12.80087 -12.75778 -12.54116 -12.21629 -11.74351 -11.37001 -11.26231 -11.07296 -10.90922 -10.85323 -10.75802 -10.10878 -9.95318 -8.94426 -8.74974 -8.51600 -7.90763 -7.26436 -6.15504 -4.33056 1.81598 2.01864 3.20753 3.25868 3.29304 4.25086 4.42613 4.50372 4.74921 5.06373 5.07116 5.12565 5.40103 5.66140 5.78976 5.80424 5.85124 5.92725 6.00969 6.09247 6.23439 6.37612 6.47809 6.59010 6.85681 6.92931 7.43367 7.60265 7.67669 8.00609 8.57380 8.68077 8.85083 9.04647 9.39306 10.82054 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.043537 B = 0.007351 C = 0.007087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.970593 B = 3807.861733 C = 3950.067285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.068 3.932 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.548 4.548 8 H 0.055 0.945 9 C 0.246 3.754 10 H 0.049 0.951 11 N -0.850 5.850 12 C -0.069 4.069 13 C 0.107 3.893 14 N -0.485 5.485 15 C 0.080 3.920 16 C -0.155 4.155 17 C -0.075 4.075 18 C -0.075 4.075 19 C -0.118 4.118 20 C -0.063 4.063 21 H 0.267 0.733 22 H 0.312 0.688 23 H 0.358 0.642 24 H 0.152 0.848 25 H 0.125 0.875 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.498 -9.692 -2.705 11.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.135 4.135 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.587 4.587 8 H 0.073 0.927 9 C 0.135 3.865 10 H 0.066 0.934 11 N -0.380 5.380 12 C -0.072 4.072 13 C -0.051 4.051 14 N -0.194 5.194 15 C -0.058 4.058 16 C -0.157 4.157 17 C -0.101 4.101 18 C -0.113 4.113 19 C -0.156 4.156 20 C -0.101 4.101 21 H 0.077 0.923 22 H 0.122 0.878 23 H 0.174 0.826 24 H 0.169 0.831 25 H 0.143 0.857 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.490 -10.533 -2.192 12.564 hybrid contribution 0.365 2.371 -0.624 2.479 sum 6.855 -8.162 -2.815 11.024 Atomic orbital electron populations 1.69727 1.05859 1.27495 1.50022 1.25011 0.94955 0.99343 0.94152 0.86544 0.79571 0.82445 0.78836 1.20146 1.21070 1.20106 1.21762 0.93609 0.90928 1.52435 0.92655 1.17916 0.88788 0.87737 0.92049 0.93355 1.59528 1.18420 1.56201 1.03843 1.21377 0.96944 0.96095 0.92764 1.22337 0.91963 0.92451 0.98326 1.66779 1.14594 1.07323 1.30678 1.21562 0.98140 0.97070 0.89006 1.21279 0.99290 0.97971 0.97167 1.20923 0.96545 0.93822 0.98801 1.20880 0.96716 0.97181 0.96474 1.22280 0.97812 1.00920 0.94598 1.20829 0.97788 0.95132 0.96323 0.92266 0.87838 0.82600 0.83105 0.85722 0.90514 0.90910 0.91032 0.90544 0.90583 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.21 11.54 55.43 0.64 -23.57 16 2 C 0.07 1.82 5.38 -17.82 -0.10 1.72 16 3 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.55 -14.61 8.71 -34.44 -0.30 -14.91 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.25 6.08 2.97 -70.01 -0.21 5.87 16 10 H 0.05 1.30 8.03 -51.93 -0.42 0.88 16 11 N -0.85 -20.09 9.03 -6.65 -0.06 -20.15 16 12 C -0.07 -1.54 4.90 -104.50 -0.51 -2.05 16 13 C 0.11 2.28 10.46 -17.62 -0.18 2.10 16 14 N -0.49 -9.94 10.35 -9.19 -0.10 -10.03 16 15 C 0.08 1.45 7.32 -82.04 -0.60 0.85 16 16 C -0.16 -2.73 6.16 -104.20 -0.64 -3.37 16 17 C -0.07 -1.49 9.82 -39.27 -0.39 -1.88 16 18 C -0.07 -0.97 6.77 -26.91 -0.18 -1.15 16 19 C -0.12 -1.30 7.08 -25.32 -0.18 -1.48 16 20 C -0.06 -0.83 6.77 -26.81 -0.18 -1.02 16 21 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 22 H 0.31 6.98 7.39 -39.29 -0.29 6.69 16 23 H 0.36 8.99 7.08 -39.29 -0.28 8.71 16 24 H 0.15 3.09 6.70 -52.49 -0.35 2.74 16 25 H 0.12 2.33 8.06 -52.49 -0.42 1.90 16 26 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 260.26 15.07 3.92 3.92 Total: -1.00 -28.36 260.26 -7.92 -36.28 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -3.84 Total: 13.08 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -3.47 Total: -15.32 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.48 Total: -53.75 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.36 -7.92 -36.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260241481.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.249 kcal (2) G-P(sol) polarization free energy of solvation -28.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds