Wall clock time and date at job start Mon Mar 30 2020 02:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00151 * 2 1 4 4 H 1.48506 * 109.47315 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47115 * 300.00004 * 3 2 1 6 6 H 1.48500 * 109.47337 * 60.00203 * 3 2 1 7 7 C 1.37887 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99554 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00032 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47169 * 300.00096 * 9 7 2 11 11 N 1.46896 * 109.46923 * 60.00497 * 9 7 2 12 12 C 1.50699 * 109.46919 * 180.02562 * 9 7 2 13 13 C 1.38224 * 120.50701 * 280.00000 * 12 9 7 14 14 N 1.31694 * 120.80045 * 179.97438 * 13 12 9 15 15 C 1.32293 * 122.03217 * 0.02562 * 14 13 12 16 16 C 1.38166 * 120.26679 * 359.97438 * 15 14 13 17 17 C 1.38580 * 120.50426 * 100.02216 * 12 9 7 18 18 C 1.51221 * 109.95640 * 180.02562 * 16 15 14 19 19 C 1.54373 * 105.12011 * 17.12869 * 18 16 15 20 20 C 1.51473 * 130.14425 * 179.97438 * 15 14 13 21 21 H 0.96994 * 120.00147 * 359.97438 * 1 2 3 22 22 H 1.00904 * 111.00414 * 59.99446 * 11 9 7 23 23 H 1.00906 * 110.99879 * 183.95304 * 11 9 7 24 24 H 1.07999 * 119.59930 * 0.28027 * 13 12 9 25 25 H 1.08003 * 120.71828 * 359.97082 * 17 12 9 26 26 H 1.08997 * 110.31375 * 136.04250 * 18 16 15 27 27 H 1.09001 * 110.31922 * 258.11925 * 18 16 15 28 28 H 1.09005 * 110.81818 * 91.92936 * 19 18 16 29 29 H 1.08993 * 110.82406 * 215.28075 * 19 18 16 30 30 H 1.09000 * 110.29631 * 281.71251 * 20 15 14 31 31 H 1.09001 * 110.29795 * 43.84827 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8896 11 7 0.4061 -2.5767 -1.1997 12 6 2.2303 -3.6446 -0.0005 13 6 2.8434 -4.0436 -1.1733 14 7 3.7005 -5.0435 -1.1799 15 6 4.0126 -5.7073 -0.0790 16 6 3.4375 -5.3623 1.1290 17 6 2.5295 -4.3143 1.1752 18 6 3.9567 -6.2659 2.2247 19 6 5.2318 -6.9129 1.6426 20 6 4.9606 -6.8712 0.1240 21 1 -0.4850 0.8400 0.0004 22 1 0.9638 -2.5251 -2.0390 23 1 -0.1579 -3.4134 -1.1912 24 1 2.6207 -3.5259 -2.0946 25 1 2.0667 -4.0259 2.1075 26 1 4.2000 -5.6826 3.1127 27 1 3.2188 -7.0310 2.4658 28 1 6.1143 -6.3248 1.8946 29 1 5.3396 -7.9396 1.9923 30 1 4.4934 -7.8006 -0.2017 31 1 5.8890 -6.7023 -0.4217 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260241486.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:11 Heat of formation + Delta-G solvation = 26.067227 kcal Electronic energy + Delta-G solvation = -14223.856869 eV Core-core repulsion = 11890.382599 eV Total energy + Delta-G solvation = -2333.474271 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.21712 -36.46803 -34.35597 -32.03235 -31.11670 -28.33678 -27.62755 -25.83802 -23.01157 -22.53737 -20.66700 -19.60852 -16.64656 -15.95125 -15.89799 -15.29889 -14.70887 -14.07679 -13.77312 -13.15841 -13.08208 -12.78787 -12.34763 -12.29760 -11.80120 -11.48463 -11.25251 -11.13426 -10.95211 -10.85198 -10.63669 -10.01259 -9.43797 -8.85697 -8.75630 -8.46375 -7.96541 -7.13784 -5.92542 -4.08121 1.69403 1.91517 3.30657 3.39139 3.43266 4.27005 4.38912 4.48839 4.68481 5.01002 5.04320 5.29090 5.37146 5.58575 5.69851 5.74120 5.77634 5.85172 5.93837 6.03968 6.17441 6.22756 6.31087 6.42902 6.75498 6.86789 7.34903 7.41433 7.85915 8.11240 8.54230 8.58089 8.93849 9.08587 9.61118 11.11749 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.043207 B = 0.007368 C = 0.007094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.888485 B = 3799.483859 C = 3945.910014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.085 3.915 3 Si 0.885 3.115 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.533 4.533 8 H 0.053 0.947 9 C 0.259 3.741 10 H 0.048 0.952 11 N -0.808 5.808 12 C -0.118 4.118 13 C 0.095 3.905 14 N -0.483 5.483 15 C 0.081 3.919 16 C -0.154 4.154 17 C -0.071 4.071 18 C -0.076 4.076 19 C -0.118 4.118 20 C -0.063 4.063 21 H 0.256 0.744 22 H 0.318 0.682 23 H 0.299 0.701 24 H 0.151 0.849 25 H 0.126 0.874 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.524 -11.649 2.843 13.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.122 4.122 3 Si 0.713 3.287 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.571 4.571 8 H 0.072 0.928 9 C 0.149 3.851 10 H 0.066 0.934 11 N -0.334 5.334 12 C -0.123 4.123 13 C -0.063 4.063 14 N -0.192 5.192 15 C -0.057 4.057 16 C -0.156 4.156 17 C -0.098 4.098 18 C -0.114 4.114 19 C -0.156 4.156 20 C -0.101 4.101 21 H 0.066 0.934 22 H 0.131 0.869 23 H 0.109 0.891 24 H 0.168 0.832 25 H 0.144 0.856 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.382 -11.080 2.306 12.993 hybrid contribution 0.571 0.460 0.536 0.908 sum 6.953 -10.620 2.843 13.008 Atomic orbital electron populations 1.70109 1.05683 1.25747 1.46463 1.24943 0.94657 0.98589 0.94044 0.86672 0.80269 0.84185 0.77602 1.19888 1.20904 1.21020 1.20844 0.92227 0.89325 1.54740 0.92828 1.18157 0.87268 0.88476 0.91223 0.93377 1.59199 1.27930 1.42028 1.04237 1.22715 0.98930 0.97717 0.92896 1.22381 0.92649 0.92813 0.98442 1.66766 1.14275 1.07321 1.30790 1.21588 0.98049 0.97054 0.88983 1.21358 0.99125 0.97958 0.97161 1.21011 0.96287 0.93557 0.98910 1.20897 0.96748 0.97193 0.96518 1.22282 0.97826 1.00997 0.94511 1.20835 0.97807 0.95049 0.96407 0.93384 0.86888 0.89065 0.83177 0.85586 0.90809 0.90495 0.90963 0.90479 0.90217 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.31 12.77 55.43 0.71 -23.60 16 2 C 0.08 2.34 5.39 -17.82 -0.10 2.25 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.53 -14.50 8.71 -34.44 -0.30 -14.80 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.26 6.31 2.87 -70.02 -0.20 6.11 16 10 H 0.05 1.28 8.03 -51.93 -0.42 0.86 16 11 N -0.81 -18.62 8.37 -6.66 -0.06 -18.68 16 12 C -0.12 -2.52 4.89 -104.50 -0.51 -3.03 16 13 C 0.09 1.94 10.46 -17.62 -0.18 1.76 16 14 N -0.48 -9.60 10.35 -9.19 -0.10 -9.69 16 15 C 0.08 1.42 7.32 -82.04 -0.60 0.82 16 16 C -0.15 -2.63 6.16 -104.21 -0.64 -3.27 16 17 C -0.07 -1.38 9.82 -39.27 -0.39 -1.76 16 18 C -0.08 -0.95 6.77 -26.91 -0.18 -1.13 16 19 C -0.12 -1.26 7.08 -25.32 -0.18 -1.44 16 20 C -0.06 -0.81 6.77 -26.81 -0.18 -0.99 16 21 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 22 H 0.32 6.97 7.38 -39.29 -0.29 6.68 16 23 H 0.30 6.18 9.06 -39.29 -0.36 5.83 16 24 H 0.15 2.95 6.70 -52.49 -0.35 2.60 16 25 H 0.13 2.28 8.06 -52.48 -0.42 1.86 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 262.71 15.07 3.96 3.96 Total: -1.00 -30.28 262.71 -7.88 -38.17 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -3.92 Total: 9.10 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -3.46 Total: -15.49 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: 0.56 Total: -51.97 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.28 -7.88 -38.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260241486.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.233 kcal (2) G-P(sol) polarization free energy of solvation -30.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds