Wall clock time and date at job start Mon Mar 30 2020 02:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00151 * 2 1 4 4 H 1.48506 * 109.47315 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47115 * 300.00004 * 3 2 1 6 6 H 1.48500 * 109.47337 * 60.00203 * 3 2 1 7 7 C 1.37887 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99554 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00032 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47169 * 300.00096 * 9 7 2 11 11 N 1.46896 * 109.46923 * 60.00497 * 9 7 2 12 12 C 1.50699 * 109.46919 * 180.02562 * 9 7 2 13 13 C 1.38224 * 120.50701 * 280.00000 * 12 9 7 14 14 N 1.31694 * 120.80045 * 179.97438 * 13 12 9 15 15 C 1.32293 * 122.03217 * 0.02562 * 14 13 12 16 16 C 1.38166 * 120.26679 * 359.97438 * 15 14 13 17 17 C 1.38580 * 120.50426 * 100.02216 * 12 9 7 18 18 C 1.51221 * 109.95640 * 180.02562 * 16 15 14 19 19 C 1.54373 * 105.12011 * 17.12869 * 18 16 15 20 20 C 1.51473 * 130.14425 * 179.97438 * 15 14 13 21 21 H 0.96994 * 120.00147 * 359.97438 * 1 2 3 22 22 H 1.00904 * 111.00414 * 59.99446 * 11 9 7 23 23 H 1.00906 * 110.99879 * 183.95304 * 11 9 7 24 24 H 1.07999 * 119.59930 * 0.28027 * 13 12 9 25 25 H 1.08003 * 120.71828 * 359.97082 * 17 12 9 26 26 H 1.08997 * 110.31375 * 136.04250 * 18 16 15 27 27 H 1.09001 * 110.31922 * 258.11925 * 18 16 15 28 28 H 1.09005 * 110.81818 * 91.92936 * 19 18 16 29 29 H 1.08993 * 110.82406 * 215.28075 * 19 18 16 30 30 H 1.09000 * 110.29631 * 281.71251 * 20 15 14 31 31 H 1.09001 * 110.29795 * 43.84827 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8896 11 7 0.4061 -2.5767 -1.1997 12 6 2.2303 -3.6446 -0.0005 13 6 2.8434 -4.0436 -1.1733 14 7 3.7005 -5.0435 -1.1799 15 6 4.0126 -5.7073 -0.0790 16 6 3.4375 -5.3623 1.1290 17 6 2.5295 -4.3143 1.1752 18 6 3.9567 -6.2659 2.2247 19 6 5.2318 -6.9129 1.6426 20 6 4.9606 -6.8712 0.1240 21 1 -0.4850 0.8400 0.0004 22 1 0.9638 -2.5251 -2.0390 23 1 -0.1579 -3.4134 -1.1912 24 1 2.6207 -3.5259 -2.0946 25 1 2.0667 -4.0259 2.1075 26 1 4.2000 -5.6826 3.1127 27 1 3.2188 -7.0310 2.4658 28 1 6.1143 -6.3248 1.8946 29 1 5.3396 -7.9396 1.9923 30 1 4.4934 -7.8006 -0.2017 31 1 5.8890 -6.7023 -0.4217 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260241486.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:10 Heat of formation + Delta-G solvation = 5.750325 kcal Electronic energy + Delta-G solvation = -14224.737876 eV Core-core repulsion = 11890.382599 eV Total energy + Delta-G solvation = -2334.355278 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.61229 -37.86698 -36.00382 -33.88231 -32.76868 -29.73692 -28.88617 -27.76339 -24.37648 -24.27762 -21.82019 -21.13937 -18.61554 -17.48299 -17.27419 -16.62551 -16.44055 -15.88657 -15.36192 -14.69264 -14.40850 -14.19390 -13.77327 -13.73778 -13.33707 -13.01503 -12.79228 -12.75881 -12.47452 -12.05958 -12.02238 -11.76624 -11.38171 -10.62183 -10.38516 -10.24400 -9.47658 -8.94451 -8.03147 -6.25332 0.23510 0.40182 1.39563 1.42297 1.52552 2.42930 2.85977 3.12117 3.20567 3.58083 3.91069 4.09852 4.16996 4.19812 4.32123 4.41274 4.43036 4.71767 4.86067 4.88439 4.96848 5.05421 5.17279 5.22543 5.32016 5.37213 5.58773 5.70176 5.87042 6.10142 6.58136 7.02724 7.07998 7.18932 7.47466 9.00527 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.043207 B = 0.007368 C = 0.007094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.888485 B = 3799.483859 C = 3945.910014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.039 3.961 3 Si 0.948 3.052 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.040 0.960 9 C 0.267 3.733 10 H 0.018 0.982 11 N -0.817 5.817 12 C -0.139 4.139 13 C 0.083 3.917 14 N -0.500 5.500 15 C 0.071 3.929 16 C -0.153 4.153 17 C -0.086 4.086 18 C -0.076 4.076 19 C -0.107 4.107 20 C -0.063 4.063 21 H 0.258 0.742 22 H 0.324 0.676 23 H 0.312 0.688 24 H 0.148 0.852 25 H 0.130 0.870 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.099 0.901 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.193 -13.190 3.669 15.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.165 4.165 3 Si 0.774 3.226 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.584 4.584 8 H 0.059 0.941 9 C 0.157 3.843 10 H 0.036 0.964 11 N -0.344 5.344 12 C -0.144 4.144 13 C -0.074 4.074 14 N -0.208 5.208 15 C -0.067 4.067 16 C -0.154 4.154 17 C -0.112 4.112 18 C -0.113 4.113 19 C -0.144 4.144 20 C -0.101 4.101 21 H 0.067 0.933 22 H 0.137 0.863 23 H 0.123 0.877 24 H 0.165 0.835 25 H 0.148 0.852 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.096 0.904 29 H 0.132 0.868 30 H 0.117 0.883 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.055 -12.625 3.130 15.300 hybrid contribution 0.086 0.824 0.307 0.884 sum 8.142 -11.801 3.436 14.743 Atomic orbital electron populations 1.70216 1.06942 1.26543 1.47538 1.25642 0.95439 1.01688 0.93765 0.85687 0.78819 0.80297 0.77784 1.19929 1.20459 1.20310 1.21081 0.91789 0.91052 1.54479 0.94138 1.17773 0.87343 0.88880 0.90348 0.96442 1.59017 1.28267 1.43022 1.04101 1.22349 0.99733 0.97952 0.94336 1.22304 0.93373 0.93604 0.98078 1.66824 1.14355 1.07499 1.32165 1.22586 0.98097 0.97586 0.88424 1.21884 0.97407 0.97116 0.99040 1.21180 0.97176 0.94501 0.98360 1.21075 0.98060 0.96887 0.95289 1.22337 0.96755 1.03105 0.92245 1.21059 0.96983 0.93573 0.98464 0.93326 0.86300 0.87685 0.83461 0.85231 0.89719 0.88451 0.90437 0.86824 0.88297 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.32 12.77 21.45 0.27 -51.05 16 2 C 0.04 2.17 5.39 84.66 0.46 2.63 16 3 Si 0.95 44.19 29.54 68.60 2.03 46.22 16 4 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.55 -30.49 8.71 25.60 0.22 -30.27 16 8 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 9 C 0.27 13.50 2.87 43.42 0.12 13.63 16 10 H 0.02 0.98 8.03 -2.39 -0.02 0.96 16 11 N -0.82 -38.86 8.37 -174.97 -1.46 -40.32 16 12 C -0.14 -6.11 4.89 -19.79 -0.10 -6.20 16 13 C 0.08 3.48 10.46 84.71 0.89 4.36 16 14 N -0.50 -19.65 10.35 -182.99 -1.89 -21.55 16 15 C 0.07 2.38 7.32 42.72 0.31 2.69 16 16 C -0.15 -4.94 6.16 -19.60 -0.12 -5.06 16 17 C -0.09 -3.33 9.82 22.47 0.22 -3.11 16 18 C -0.08 -1.61 6.77 30.48 0.21 -1.40 16 19 C -0.11 -1.76 7.08 31.51 0.22 -1.54 16 20 C -0.06 -1.39 6.77 30.54 0.21 -1.19 16 21 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 22 H 0.32 14.65 7.38 -89.69 -0.66 13.99 16 23 H 0.31 13.30 9.06 -89.69 -0.81 12.48 16 24 H 0.15 6.02 6.70 -2.91 -0.02 6.00 16 25 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 26 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -65.94 262.71 1.26 -64.68 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: -0.33 Total: 27.47 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 2.64 Total: -25.46 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -3.08 Total: -112.91 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -65.94 1.26 -64.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260241486.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.429 kcal (2) G-P(sol) polarization free energy of solvation -65.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds