Wall clock time and date at job start Mon Mar 30 2020 02:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00286 * 2 1 4 4 H 1.48499 * 109.47199 * 270.00131 * 3 2 1 5 5 H 1.48503 * 109.46956 * 30.00194 * 3 2 1 6 6 H 1.48501 * 109.47243 * 150.00131 * 3 2 1 7 7 C 1.37874 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00280 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00073 * 179.97438 * 7 2 1 10 10 H 1.09007 * 110.27398 * 60.63656 * 9 7 2 11 11 C 1.54598 * 110.31126 * 298.54917 * 9 7 2 12 12 C 1.54937 * 102.91718 * 263.04123 * 11 9 7 13 13 N 1.48536 * 103.22853 * 322.58046 * 12 11 9 14 14 C 1.47907 * 105.81586 * 39.21264 * 13 12 11 15 15 H 1.09001 * 109.91657 * 94.02423 * 14 13 12 16 16 C 1.50700 * 109.91242 * 215.31331 * 14 13 12 17 17 C 1.38651 * 120.79383 * 38.26896 * 16 14 13 18 18 C 1.38197 * 119.16633 * 179.75164 * 17 16 14 19 19 N 1.31870 * 120.76325 * 0.53155 * 18 17 16 20 20 C 1.31864 * 121.72586 * 359.74097 * 19 18 17 21 21 C 1.38202 * 120.76540 * 359.97438 * 20 19 18 22 22 H 0.97005 * 119.99848 * 0.02562 * 1 2 3 23 23 H 1.08991 * 110.72330 * 144.68224 * 11 9 7 24 24 H 1.08997 * 110.87232 * 21.46585 * 11 9 7 25 25 H 1.09008 * 110.66329 * 204.15068 * 12 11 9 26 26 H 1.08996 * 110.67083 * 81.02133 * 12 11 9 27 27 H 1.00900 * 110.99994 * 159.71850 * 13 12 11 28 28 H 1.08003 * 120.41372 * 359.97438 * 17 16 14 29 29 H 1.08001 * 119.62391 * 180.29486 * 18 17 16 30 30 H 1.08006 * 119.62197 * 179.97438 * 20 19 18 31 31 H 1.08006 * 120.42405 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 1 3.8896 -0.6930 0.8900 11 6 4.0476 -0.5010 -1.2747 12 6 4.3390 -1.6927 -2.2210 13 7 4.8619 -2.7362 -1.3024 14 6 4.0458 -2.6366 -0.0729 15 1 3.2137 -3.3389 -0.1216 16 6 4.8990 -2.9287 1.1345 17 6 6.2102 -2.4830 1.2018 18 6 6.9606 -2.7656 2.3273 19 7 6.4465 -3.4590 3.3243 20 6 5.2054 -3.9034 3.2923 21 6 4.3932 -3.6545 2.2022 22 1 -0.4850 0.8401 -0.0004 23 1 4.9617 0.0515 -1.0574 24 1 3.2935 0.1578 -1.7051 25 1 5.0909 -1.4206 -2.9619 26 1 3.4238 -2.0311 -2.7066 27 1 4.7833 -3.6536 -1.7151 28 1 6.6384 -1.9189 0.3864 29 1 7.9812 -2.4178 2.3896 30 1 4.8191 -4.4684 4.1278 31 1 3.3777 -4.0216 2.1816 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260241943.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:32 Heat of formation + Delta-G solvation = 36.936476 kcal Electronic energy + Delta-G solvation = -14578.244096 eV Core-core repulsion = 12245.241151 eV Total energy + Delta-G solvation = -2333.002945 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.87113 -37.80277 -32.83189 -32.36640 -30.76453 -29.90816 -27.90725 -24.63651 -23.06521 -22.27794 -20.74073 -19.31265 -16.92929 -16.45246 -15.89915 -15.36701 -15.05878 -14.42803 -14.00451 -13.48806 -13.32541 -12.98874 -12.45774 -12.01491 -11.88679 -11.44657 -11.20809 -10.82272 -10.74025 -10.41935 -10.07942 -9.77690 -9.17365 -9.09482 -8.86597 -8.73409 -8.63175 -8.11107 -6.18462 -4.18948 1.56153 1.72421 3.19974 3.31944 3.34560 4.22456 4.32191 4.67477 4.80500 5.07558 5.24044 5.38986 5.54654 5.61633 5.64813 5.81471 5.93654 6.01153 6.10659 6.22901 6.25167 6.45319 6.63655 6.69849 6.81559 6.90717 7.14133 7.20064 7.27355 7.66703 7.79921 8.33031 8.37395 8.82103 9.42974 10.94002 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.030753 B = 0.010045 C = 0.009169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.253933 B = 2786.916444 C = 3053.180396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.263 1.263 7 C -0.516 4.516 8 H 0.074 0.926 9 C 0.021 3.979 10 H 0.036 0.964 11 C -0.134 4.134 12 C 0.050 3.950 13 N -0.671 5.671 14 C 0.114 3.886 15 H 0.064 0.936 16 C -0.008 4.008 17 C -0.146 4.146 18 C 0.082 3.918 19 N -0.500 5.500 20 C 0.088 3.912 21 C -0.168 4.168 22 H 0.265 0.735 23 H 0.048 0.952 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.045 0.955 27 H 0.329 0.671 28 H 0.137 0.863 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.867 -4.490 -0.216 10.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.188 1.188 7 C -0.554 4.554 8 H 0.092 0.908 9 C 0.002 3.998 10 H 0.054 0.946 11 C -0.172 4.172 12 C -0.079 4.079 13 N -0.299 5.299 14 C 0.004 3.996 15 H 0.082 0.918 16 C -0.017 4.017 17 C -0.166 4.166 18 C -0.075 4.075 19 N -0.209 5.209 20 C -0.069 4.069 21 C -0.188 4.188 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.143 0.857 28 H 0.155 0.845 29 H 0.165 0.835 30 H 0.166 0.834 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.802 -4.183 0.753 11.608 hybrid contribution -1.157 0.763 -1.075 1.754 sum 9.645 -3.420 -0.323 10.238 Atomic orbital electron populations 1.69891 1.06270 1.27134 1.50131 1.24977 0.94688 0.99080 0.94187 0.86925 0.80418 0.83563 0.78306 1.20213 1.21954 1.18755 1.21016 0.88094 0.94535 1.51731 0.90838 1.19968 0.96726 0.89185 0.93928 0.94633 1.22942 0.99311 0.96989 0.97971 1.22848 0.97520 0.92638 0.94847 1.62904 1.54021 1.07632 1.05301 1.21291 0.91347 1.00207 0.86741 0.91823 1.20425 0.93959 0.92083 0.95210 1.21985 0.94629 1.00824 0.99118 1.22653 0.99791 0.95405 0.89607 1.67573 1.13872 1.10774 1.28722 1.22580 0.89672 0.97490 0.97163 1.22081 1.01387 1.00432 0.94918 0.92510 0.93312 0.91197 0.91424 0.93651 0.85712 0.84518 0.83513 0.83360 0.84968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.65 13.96 55.43 0.77 -25.87 16 2 C 0.07 2.04 5.37 -17.82 -0.10 1.94 16 3 Si 0.88 21.29 24.64 -169.99 -4.19 17.10 16 4 H -0.28 -6.44 6.88 56.52 0.39 -6.05 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.26 -6.20 6.56 56.52 0.37 -5.83 16 7 C -0.52 -13.83 9.12 -34.44 -0.31 -14.15 16 8 H 0.07 2.13 7.59 -52.49 -0.40 1.73 16 9 C 0.02 0.49 2.07 -90.41 -0.19 0.30 16 10 H 0.04 0.86 6.82 -51.92 -0.35 0.51 16 11 C -0.13 -2.76 5.06 -24.87 -0.13 -2.89 16 12 C 0.05 0.88 7.55 -1.90 -0.01 0.86 16 13 N -0.67 -11.25 6.44 -104.33 -0.67 -11.92 16 14 C 0.11 2.18 3.18 -67.79 -0.22 1.97 16 15 H 0.06 1.28 7.31 -51.93 -0.38 0.90 16 16 C -0.01 -0.14 4.78 -104.32 -0.50 -0.64 16 17 C -0.15 -2.41 9.43 -39.44 -0.37 -2.79 16 18 C 0.08 1.27 11.18 -17.55 -0.20 1.07 16 19 N -0.50 -8.27 10.36 -13.25 -0.14 -8.41 16 20 C 0.09 1.37 11.18 -17.55 -0.20 1.17 16 21 C -0.17 -2.80 9.80 -39.44 -0.39 -3.19 16 22 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.07 1.55 5.04 -51.93 -0.26 1.29 16 25 H 0.07 1.03 8.14 -51.92 -0.42 0.60 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.33 4.83 8.92 -39.29 -0.35 4.48 16 28 H 0.14 2.19 7.77 -52.48 -0.41 1.78 16 29 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 30 H 0.15 1.86 8.06 -52.48 -0.42 1.43 16 31 H 0.13 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 255.01 15.07 3.84 3.84 Total: -1.00 -29.61 255.01 -6.85 -36.46 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -3.87 Total: 5.14 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -2.60 Total: -16.34 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: -0.04 Total: -46.21 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.19 Total: 17.10 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.61 -6.85 -36.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260241943.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.400 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds