Wall clock time and date at job start Mon Mar 30 2020 02:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00183 * 2 1 4 4 H 1.48498 * 109.47431 * 264.86419 * 3 2 1 5 5 H 1.48502 * 109.47050 * 24.86735 * 3 2 1 6 6 H 1.48499 * 109.47152 * 144.86067 * 3 2 1 7 7 C 1.37885 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99499 * 3.74476 * 7 2 1 9 9 C 1.50691 * 120.00204 * 183.74279 * 7 2 1 10 10 H 1.09005 * 110.27685 * 333.05481 * 9 7 2 11 11 C 1.54589 * 110.31403 * 95.14693 * 9 7 2 12 12 C 1.54936 * 103.08350 * 96.96619 * 11 9 7 13 13 N 1.49002 * 103.00281 * 37.39821 * 12 11 9 14 14 C 1.47901 * 105.87469 * 320.83076 * 13 12 11 15 15 H 1.08998 * 109.91062 * 265.97820 * 14 13 12 16 16 C 1.50701 * 110.08117 * 144.77791 * 14 13 12 17 17 C 1.38645 * 120.78896 * 322.02703 * 16 14 13 18 18 C 1.38213 * 119.16253 * 179.79878 * 17 16 14 19 19 N 1.31868 * 120.75996 * 0.48836 * 18 17 16 20 20 C 1.31875 * 121.73042 * 359.74258 * 19 18 17 21 21 C 1.38207 * 120.75810 * 0.02562 * 20 19 18 22 22 H 0.96991 * 119.99784 * 0.02562 * 1 2 3 23 23 H 1.08999 * 110.73120 * 215.41793 * 11 9 7 24 24 H 1.09006 * 110.72208 * 338.52564 * 11 9 7 25 25 H 1.09000 * 110.66879 * 155.94139 * 12 11 9 26 26 H 1.09003 * 110.66933 * 279.06953 * 12 11 9 27 27 H 1.00903 * 110.97249 * 81.36570 * 13 12 11 28 28 H 1.08002 * 120.42255 * 0.02562 * 17 16 14 29 29 H 1.08000 * 119.61849 * 180.20734 * 18 17 16 30 30 H 1.07992 * 119.62235 * 179.97438 * 20 19 18 31 31 H 1.07999 * 120.41641 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6053 1.9838 -1.3944 5 1 1.3966 2.6816 0.5888 6 1 3.4882 1.4739 0.8058 7 6 2.0046 -1.1941 0.0005 8 1 1.4663 -2.1284 -0.0601 9 6 3.5091 -1.1955 0.0857 10 1 3.9116 -0.2699 -0.3259 11 6 3.9634 -1.3724 1.5527 12 6 4.2504 -2.8918 1.6501 13 7 4.8501 -3.2055 0.3227 14 6 4.0879 -2.4098 -0.6638 15 1 3.2785 -3.0101 -1.0792 16 6 5.0005 -1.9439 -1.7689 17 6 6.3003 -1.5462 -1.4956 18 6 7.1096 -1.1289 -2.5354 19 7 6.6553 -1.0975 -3.7730 20 6 5.4235 -1.4640 -4.0691 21 6 4.5584 -1.8971 -3.0821 22 1 -0.4849 0.8400 -0.0004 23 1 4.8674 -0.7958 1.7489 24 1 3.1677 -1.0854 2.2402 25 1 4.9567 -3.0992 2.4540 26 1 3.3253 -3.4495 1.7961 27 1 5.8297 -2.9641 0.3028 28 1 6.6768 -1.5657 -0.4836 29 1 8.1244 -0.8207 -2.3314 30 1 5.0867 -1.4244 -5.0944 31 1 3.5507 -2.1955 -3.3308 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260241947.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:34 Heat of formation + Delta-G solvation = 33.219133 kcal Electronic energy + Delta-G solvation = -14615.141655 eV Core-core repulsion = 12281.977514 eV Total energy + Delta-G solvation = -2333.164141 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.07565 -37.84823 -32.81407 -32.42465 -30.94456 -29.65936 -27.84981 -24.60912 -23.29890 -22.36787 -20.80861 -19.20483 -17.31511 -16.65968 -15.88950 -15.27372 -14.76101 -14.70286 -13.62029 -13.49088 -13.44789 -12.98828 -12.72168 -12.46130 -11.73217 -11.40158 -11.19388 -10.81985 -10.73066 -10.53363 -9.99666 -9.85195 -9.26284 -9.22303 -9.03540 -8.87264 -8.62835 -8.02257 -6.18454 -4.17584 1.41319 1.58816 3.20611 3.29418 3.30938 4.09815 4.32300 4.68409 4.78791 5.00435 5.09843 5.12943 5.39506 5.49683 5.63909 5.85249 5.87707 5.96222 6.07006 6.19462 6.25001 6.37916 6.52870 6.64205 6.83115 6.94953 7.05213 7.10639 7.28424 7.67293 7.83760 8.21238 8.40937 8.86195 9.44163 10.94236 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.025282 B = 0.011793 C = 0.009638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.237304 B = 2373.700588 C = 2904.364234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.075 3.925 3 Si 0.873 3.127 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.507 4.507 8 H 0.077 0.923 9 C 0.004 3.996 10 H 0.035 0.965 11 C -0.156 4.156 12 C 0.048 3.952 13 N -0.674 5.674 14 C 0.111 3.889 15 H 0.100 0.900 16 C -0.017 4.017 17 C -0.180 4.180 18 C 0.094 3.906 19 N -0.499 5.499 20 C 0.094 3.906 21 C -0.161 4.161 22 H 0.265 0.735 23 H 0.037 0.963 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.324 0.676 28 H 0.128 0.872 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.871 -2.512 -1.729 11.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.128 4.128 3 Si 0.701 3.299 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.545 4.545 8 H 0.095 0.905 9 C -0.017 4.017 10 H 0.053 0.947 11 C -0.196 4.196 12 C -0.081 4.081 13 N -0.302 5.302 14 C 0.001 3.999 15 H 0.118 0.882 16 C -0.026 4.026 17 C -0.200 4.200 18 C -0.063 4.063 19 N -0.209 5.209 20 C -0.062 4.062 21 C -0.181 4.181 22 H 0.075 0.925 23 H 0.056 0.944 24 H 0.093 0.907 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.141 0.859 28 H 0.145 0.855 29 H 0.167 0.833 30 H 0.170 0.830 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 10.911 -2.778 -2.507 11.535 hybrid contribution 0.065 1.738 0.905 1.960 sum 10.976 -1.040 -1.601 11.141 Atomic orbital electron populations 1.69887 1.06218 1.27091 1.50060 1.25029 0.94659 0.98838 0.94257 0.86916 0.80209 0.83972 0.78848 1.20158 1.21400 1.19211 1.20915 0.88131 0.94590 1.50851 0.90507 1.20323 0.97613 0.93264 0.90482 0.94674 1.23412 0.99584 0.95795 1.00785 1.23087 0.99461 0.95465 0.90047 1.63215 1.06051 1.56132 1.04791 1.21748 0.93399 0.94913 0.89819 0.88203 1.20709 0.93776 0.92734 0.95370 1.21890 0.95009 1.02484 1.00600 1.22586 0.99565 0.96054 0.88074 1.67612 1.15938 1.15513 1.21838 1.22691 0.89204 0.94654 0.99632 1.22103 1.01572 1.01391 0.93040 0.92510 0.94412 0.90733 0.92204 0.90048 0.85929 0.85456 0.83290 0.83034 0.84335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.52 13.96 55.43 0.77 -25.75 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 21.30 26.97 -169.99 -4.58 16.71 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.29 6.90 56.52 0.39 -5.90 16 7 C -0.51 -13.49 8.61 -34.44 -0.30 -13.78 16 8 H 0.08 2.23 7.93 -52.48 -0.42 1.81 16 9 C 0.00 0.08 2.13 -90.42 -0.19 -0.11 16 10 H 0.04 0.82 5.07 -51.93 -0.26 0.56 16 11 C -0.16 -3.10 6.59 -24.87 -0.16 -3.26 16 12 C 0.05 0.84 7.59 -1.63 -0.01 0.82 16 13 N -0.67 -11.64 7.40 -103.98 -0.77 -12.41 16 14 C 0.11 2.15 3.30 -67.79 -0.22 1.92 16 15 H 0.10 2.10 7.52 -51.93 -0.39 1.71 16 16 C -0.02 -0.30 4.77 -104.32 -0.50 -0.80 16 17 C -0.18 -2.80 9.07 -39.44 -0.36 -3.15 16 18 C 0.09 1.39 11.18 -17.55 -0.20 1.19 16 19 N -0.50 -8.07 10.36 -13.25 -0.14 -8.20 16 20 C 0.09 1.46 11.18 -17.54 -0.20 1.26 16 21 C -0.16 -2.69 9.79 -39.44 -0.39 -3.08 16 22 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.07 1.59 7.85 -51.93 -0.41 1.18 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.32 4.97 6.32 -39.29 -0.25 4.72 16 28 H 0.13 1.74 6.69 -52.49 -0.35 1.39 16 29 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.14 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 257.78 15.07 3.88 3.88 Total: -1.00 -29.66 257.78 -7.21 -36.87 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -3.76 Total: 5.90 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -2.62 Total: -17.01 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -0.13 Total: -46.36 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.58 Total: 16.71 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.66 -7.21 -36.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260241947.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.094 kcal (2) G-P(sol) polarization free energy of solvation -29.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds