Wall clock time and date at job start Mon Mar 30 2020 02:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00074 * 2 1 4 4 H 1.48499 * 109.46986 * 239.99455 * 3 2 1 5 5 H 1.48498 * 109.46962 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47118 * 119.99379 * 3 2 1 7 7 C 1.37875 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00143 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00386 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.27301 * 307.44447 * 9 7 2 11 11 C 1.54599 * 110.38822 * 69.58480 * 9 7 2 12 12 C 1.54941 * 102.91564 * 140.92171 * 11 9 7 13 13 N 1.48532 * 103.22634 * 322.58099 * 12 11 9 14 14 C 1.47898 * 105.81986 * 39.21359 * 13 12 11 15 15 H 1.08997 * 110.08622 * 94.11024 * 14 13 12 16 16 C 1.50700 * 109.91651 * 215.31271 * 14 13 12 17 17 C 1.38232 * 119.62020 * 203.76875 * 16 14 13 18 18 C 1.38620 * 119.16343 * 180.25917 * 17 16 14 19 19 C 1.38673 * 118.42356 * 0.02562 * 18 17 16 20 20 C 1.38187 * 119.15897 * 359.97438 * 19 18 17 21 21 N 1.31856 * 119.61746 * 24.04537 * 16 14 13 22 22 H 0.97007 * 120.00081 * 0.02562 * 1 2 3 23 23 H 1.08992 * 110.72431 * 259.27259 * 11 9 7 24 24 H 1.08995 * 110.72576 * 22.38849 * 11 9 7 25 25 H 1.09000 * 110.67057 * 81.02337 * 12 11 9 26 26 H 1.09006 * 110.66576 * 203.98652 * 12 11 9 27 27 H 1.00900 * 111.00293 * 278.69201 * 13 12 11 28 28 H 1.08000 * 120.41662 * 0.25784 * 17 16 14 29 29 H 1.08001 * 120.78621 * 179.97438 * 18 17 16 30 30 H 1.07996 * 120.42195 * 180.02562 * 19 18 17 31 31 H 1.07999 * 119.61674 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.5234 -2.5153 0.8120 11 6 0.5444 -2.7132 -1.3578 12 6 0.7328 -4.2301 -1.6109 13 7 2.0996 -4.4940 -1.0928 14 6 2.2289 -3.6810 0.1359 15 1 1.9699 -4.2790 1.0095 16 6 3.6398 -3.1675 0.2656 17 6 4.1301 -2.8243 1.5116 18 6 5.4274 -2.3480 1.6193 19 6 6.1866 -2.2336 0.4644 20 6 5.6287 -2.5961 -0.7467 21 7 4.3905 -3.0458 -0.8115 22 1 -0.4850 0.8401 -0.0004 23 1 -0.5139 -2.4627 -1.2858 24 1 1.0260 -2.1262 -2.1398 25 1 -0.0070 -4.8075 -1.0565 26 1 0.6730 -4.4527 -2.6764 27 1 2.7998 -4.2367 -1.7722 28 1 3.5102 -2.9260 2.3901 29 1 5.8369 -2.0717 2.5797 30 1 7.2012 -1.8665 0.5111 31 1 6.2134 -2.5104 -1.6507 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260262991.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:23 Heat of formation + Delta-G solvation = 40.620255 kcal Electronic energy + Delta-G solvation = -14882.103974 eV Core-core repulsion = 12549.260770 eV Total energy + Delta-G solvation = -2332.843204 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.88373 -37.24947 -32.68448 -31.84621 -31.31426 -28.80022 -27.36605 -24.42996 -22.95316 -22.36496 -20.32599 -19.14405 -17.05662 -15.92555 -15.57511 -15.06530 -14.76758 -14.15659 -13.96996 -13.14697 -12.85409 -12.67140 -12.51229 -11.82431 -11.39657 -11.12607 -10.99140 -10.78556 -10.51503 -10.42877 -9.74843 -9.56119 -9.25695 -8.93693 -8.73014 -8.41978 -8.16588 -7.63157 -6.04472 -4.05750 1.78063 1.90476 3.28522 3.33127 3.36639 4.41096 4.44682 4.91646 5.12526 5.29584 5.31159 5.45449 5.61119 5.83175 5.95890 6.12063 6.23634 6.28343 6.38090 6.48361 6.58584 6.71069 6.78451 7.04069 7.15304 7.31611 7.48157 7.56730 7.84359 7.96586 8.21690 8.39617 8.69154 8.95265 9.58333 11.05716 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.020519 B = 0.016055 C = 0.010329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.234118 B = 1743.544096 C = 2710.060696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.883 3.117 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.510 4.510 8 H 0.062 0.938 9 C 0.036 3.964 10 H 0.041 0.959 11 C -0.126 4.126 12 C 0.033 3.967 13 N -0.673 5.673 14 C 0.114 3.886 15 H 0.078 0.922 16 C 0.195 3.805 17 C -0.161 4.161 18 C -0.078 4.078 19 C -0.202 4.202 20 C 0.100 3.900 21 N -0.487 5.487 22 H 0.260 0.740 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.348 0.652 28 H 0.129 0.871 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.394 -4.850 0.951 8.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.711 3.289 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.548 4.548 8 H 0.080 0.920 9 C 0.015 3.985 10 H 0.059 0.941 11 C -0.165 4.165 12 C -0.097 4.097 13 N -0.303 5.303 14 C 0.003 3.997 15 H 0.096 0.904 16 C 0.057 3.943 17 C -0.181 4.181 18 C -0.104 4.104 19 C -0.222 4.222 20 C -0.057 4.057 21 N -0.197 5.197 22 H 0.069 0.931 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.166 0.834 28 H 0.147 0.853 29 H 0.142 0.858 30 H 0.140 0.860 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.764 -5.625 0.455 8.809 hybrid contribution 0.888 2.479 0.493 2.679 sum 7.652 -3.145 0.948 8.327 Atomic orbital electron populations 1.69950 1.05811 1.26533 1.50383 1.24933 0.94728 0.98863 0.95110 0.86784 0.79757 0.83679 0.78637 1.20386 1.21274 1.20306 1.21257 0.92775 0.90055 1.50724 0.92009 1.19852 0.92688 0.91682 0.94243 0.94101 1.23014 1.00815 0.92904 0.99783 1.23149 0.91346 0.97079 0.98116 1.62995 1.04743 1.54749 1.07857 1.21582 0.89692 0.94293 0.94132 0.90361 1.21060 0.94850 0.90268 0.88103 1.21774 0.95848 1.01274 0.99212 1.21396 0.94148 0.96438 0.98426 1.21877 1.01129 1.05011 0.94205 1.22516 0.91514 0.94745 0.96929 1.67186 1.05556 1.14619 1.32301 0.93050 0.92294 0.92716 0.91717 0.92553 0.83379 0.85263 0.85794 0.85951 0.83766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.49 12.91 55.43 0.72 -24.77 16 2 C 0.07 1.82 5.38 -17.82 -0.10 1.72 16 3 Si 0.88 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.51 -13.67 7.53 -34.44 -0.26 -13.93 16 8 H 0.06 1.67 4.94 -52.48 -0.26 1.41 16 9 C 0.04 0.87 2.77 -90.42 -0.25 0.62 16 10 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 11 C -0.13 -2.93 6.10 -24.87 -0.15 -3.08 16 12 C 0.03 0.64 7.55 -1.90 -0.01 0.62 16 13 N -0.67 -13.61 7.39 -104.34 -0.77 -14.38 16 14 C 0.11 2.42 3.66 -67.80 -0.25 2.18 16 15 H 0.08 1.58 8.12 -51.93 -0.42 1.16 16 16 C 0.19 4.02 3.61 -82.58 -0.30 3.72 16 17 C -0.16 -3.00 8.93 -39.44 -0.35 -3.35 16 18 C -0.08 -1.27 10.18 -39.28 -0.40 -1.67 16 19 C -0.20 -3.15 10.11 -39.44 -0.40 -3.55 16 20 C 0.10 1.71 11.18 -17.55 -0.20 1.52 16 21 N -0.49 -9.84 8.42 -9.47 -0.08 -9.92 16 22 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 23 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 24 H 0.05 1.38 7.86 -51.93 -0.41 0.97 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.35 7.16 7.18 -39.29 -0.28 6.88 16 28 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 29 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 31 H 0.14 2.02 8.06 -52.49 -0.42 1.59 16 LS Contribution 257.79 15.07 3.88 3.88 Total: -1.00 -29.33 257.79 -7.83 -37.15 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -3.89 Total: 6.53 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -2.66 Total: -15.19 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.14 Total: -49.07 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.33 -7.83 -37.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260262991.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.774 kcal (2) G-P(sol) polarization free energy of solvation -29.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds