Wall clock time and date at job start Mon Mar 30 2020 02:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00074 * 2 1 4 4 H 1.48499 * 109.46986 * 239.99455 * 3 2 1 5 5 H 1.48498 * 109.46962 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47118 * 119.99379 * 3 2 1 7 7 C 1.37875 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00143 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00386 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.27301 * 307.44447 * 9 7 2 11 11 C 1.54599 * 110.38822 * 69.58480 * 9 7 2 12 12 C 1.54941 * 102.91564 * 140.92171 * 11 9 7 13 13 N 1.48532 * 103.22634 * 322.58099 * 12 11 9 14 14 C 1.47898 * 105.81986 * 39.21359 * 13 12 11 15 15 H 1.08997 * 110.08622 * 94.11024 * 14 13 12 16 16 C 1.50700 * 109.91651 * 215.31271 * 14 13 12 17 17 C 1.38232 * 119.62020 * 203.76875 * 16 14 13 18 18 C 1.38620 * 119.16343 * 180.25917 * 17 16 14 19 19 C 1.38673 * 118.42356 * 0.02562 * 18 17 16 20 20 C 1.38187 * 119.15897 * 359.97438 * 19 18 17 21 21 N 1.31856 * 119.61746 * 24.04537 * 16 14 13 22 22 H 0.97007 * 120.00081 * 0.02562 * 1 2 3 23 23 H 1.08992 * 110.72431 * 259.27259 * 11 9 7 24 24 H 1.08995 * 110.72576 * 22.38849 * 11 9 7 25 25 H 1.09000 * 110.67057 * 81.02337 * 12 11 9 26 26 H 1.09006 * 110.66576 * 203.98652 * 12 11 9 27 27 H 1.00900 * 111.00293 * 278.69201 * 13 12 11 28 28 H 1.08000 * 120.41662 * 0.25784 * 17 16 14 29 29 H 1.08001 * 120.78621 * 179.97438 * 18 17 16 30 30 H 1.07996 * 120.42195 * 180.02562 * 19 18 17 31 31 H 1.07999 * 119.61674 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.5234 -2.5153 0.8120 11 6 0.5444 -2.7132 -1.3578 12 6 0.7328 -4.2301 -1.6109 13 7 2.0996 -4.4940 -1.0928 14 6 2.2289 -3.6810 0.1359 15 1 1.9699 -4.2790 1.0095 16 6 3.6398 -3.1675 0.2656 17 6 4.1301 -2.8243 1.5116 18 6 5.4274 -2.3480 1.6193 19 6 6.1866 -2.2336 0.4644 20 6 5.6287 -2.5961 -0.7467 21 7 4.3905 -3.0458 -0.8115 22 1 -0.4850 0.8401 -0.0004 23 1 -0.5139 -2.4627 -1.2858 24 1 1.0260 -2.1262 -2.1398 25 1 -0.0070 -4.8075 -1.0565 26 1 0.6730 -4.4527 -2.6764 27 1 2.7998 -4.2367 -1.7722 28 1 3.5102 -2.9260 2.3901 29 1 5.8369 -2.0717 2.5797 30 1 7.2012 -1.8665 0.5111 31 1 6.2134 -2.5104 -1.6507 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260262991.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:23 Heat of formation + Delta-G solvation = 21.056884 kcal Electronic energy + Delta-G solvation = -14882.952305 eV Core-core repulsion = 12549.260770 eV Total energy + Delta-G solvation = -2333.691536 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.32541 -38.89446 -34.71765 -33.20194 -32.76645 -30.68984 -28.95951 -26.39918 -24.32733 -23.83019 -21.99857 -20.95526 -18.76445 -17.56785 -17.03765 -16.67269 -16.48635 -15.85465 -15.54727 -14.73980 -14.50298 -14.40138 -13.92490 -13.37341 -13.15376 -12.96229 -12.81692 -12.48786 -12.30637 -12.16539 -11.61630 -11.43287 -10.86671 -10.61004 -10.52024 -10.17037 -9.64465 -9.27404 -8.14849 -6.19934 0.42748 0.58730 1.33078 1.34309 1.41056 2.38299 3.05758 3.17659 3.53383 3.55755 4.05286 4.16104 4.29976 4.41174 4.46703 4.55033 4.58279 4.77884 4.86563 4.93887 5.00272 5.19326 5.26065 5.41453 5.45657 5.56012 5.63085 5.81532 6.01174 6.08176 6.31163 6.61794 6.89149 7.29988 7.45898 8.95239 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.020519 B = 0.016055 C = 0.010329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.234118 B = 1743.544096 C = 2710.060696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.014 3.986 3 Si 0.938 3.062 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.507 4.507 8 H 0.063 0.937 9 C 0.029 3.971 10 H 0.010 0.990 11 C -0.118 4.118 12 C 0.044 3.956 13 N -0.665 5.665 14 C 0.118 3.882 15 H 0.083 0.917 16 C 0.164 3.836 17 C -0.180 4.180 18 C -0.079 4.079 19 C -0.191 4.191 20 C 0.084 3.916 21 N -0.513 5.513 22 H 0.258 0.742 23 H 0.040 0.960 24 H 0.029 0.971 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.346 0.654 28 H 0.132 0.868 29 H 0.158 0.842 30 H 0.163 0.837 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.642 -4.842 1.063 10.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.185 4.185 3 Si 0.765 3.235 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.009 3.991 10 H 0.028 0.972 11 C -0.158 4.158 12 C -0.086 4.086 13 N -0.295 5.295 14 C 0.008 3.992 15 H 0.101 0.899 16 C 0.027 3.973 17 C -0.200 4.200 18 C -0.104 4.104 19 C -0.210 4.210 20 C -0.073 4.073 21 N -0.223 5.223 22 H 0.067 0.933 23 H 0.059 0.941 24 H 0.048 0.952 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.165 0.835 28 H 0.150 0.850 29 H 0.176 0.824 30 H 0.181 0.819 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 9.022 -5.628 0.573 10.649 hybrid contribution 0.271 2.453 0.465 2.511 sum 9.293 -3.175 1.038 9.875 Atomic orbital electron populations 1.70072 1.07023 1.26937 1.52003 1.25645 0.95462 1.01896 0.95468 0.85907 0.78650 0.80332 0.78637 1.20468 1.21086 1.19411 1.21547 0.92975 0.90928 1.49139 0.91949 1.19808 0.92897 0.92731 0.93671 0.97155 1.22823 0.99066 0.95536 0.98399 1.23142 0.91410 0.94109 0.99931 1.62997 1.04832 1.54111 1.07526 1.21411 0.90151 0.93002 0.94685 0.89871 1.20936 0.94644 0.92463 0.89239 1.21961 0.97387 1.01990 0.98678 1.21851 0.93085 0.95090 1.00416 1.22348 1.02669 1.02870 0.93125 1.23132 0.90845 0.94266 0.99042 1.67113 1.07031 1.15608 1.32523 0.93327 0.94135 0.95184 0.90348 0.90122 0.83543 0.85007 0.82397 0.81897 0.80929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.06 12.91 21.45 0.28 -53.79 16 2 C 0.01 0.77 5.38 84.65 0.46 1.22 16 3 Si 0.94 44.54 29.54 68.60 2.03 46.56 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.51 -27.50 7.53 25.60 0.19 -27.31 16 8 H 0.06 3.35 4.94 -2.91 -0.01 3.34 16 9 C 0.03 1.47 2.77 -10.66 -0.03 1.44 16 10 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 11 C -0.12 -5.65 6.10 31.80 0.19 -5.45 16 12 C 0.04 1.67 7.55 86.65 0.65 2.32 16 13 N -0.67 -26.42 7.39 -484.03 -3.58 -30.00 16 14 C 0.12 5.06 3.66 44.31 0.16 5.22 16 15 H 0.08 3.39 8.12 -2.39 -0.02 3.37 16 16 C 0.16 6.67 3.61 42.55 0.15 6.83 16 17 C -0.18 -6.48 8.93 22.36 0.20 -6.28 16 18 C -0.08 -2.30 10.18 22.47 0.23 -2.07 16 19 C -0.19 -5.18 10.11 22.36 0.23 -4.95 16 20 C 0.08 2.65 11.18 84.67 0.95 3.59 16 21 N -0.51 -20.06 8.42 -183.88 -1.55 -21.61 16 22 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 23 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.03 1.54 7.86 -2.39 -0.02 1.52 16 25 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 26 H 0.08 2.71 8.14 -2.38 -0.02 2.69 16 27 H 0.35 14.00 7.18 -89.69 -0.64 13.35 16 28 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 29 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 30 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 31 H 0.17 4.25 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -63.42 257.79 1.04 -62.38 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.48 Total: 21.89 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: 3.38 Total: -25.44 kcal Atomic # 7 Polarization: -100.54 SS G_CDS: -4.85 Total: -105.39 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -63.42 1.04 -62.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260262991.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.436 kcal (2) G-P(sol) polarization free energy of solvation -63.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds