Wall clock time and date at job start Mon Mar 30 2020 02:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00013 * 2 1 4 4 H 1.48493 * 109.47023 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46863 * 299.99769 * 3 2 1 6 6 H 1.48496 * 109.47155 * 59.99903 * 3 2 1 7 7 C 1.37880 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99814 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00455 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47425 * 180.02562 * 9 7 2 11 11 C 1.39165 * 120.00227 * 180.02562 * 10 9 7 12 12 C 1.39490 * 120.86243 * 359.72050 * 11 10 9 13 13 C 1.37881 * 119.06747 * 180.02562 * 12 11 10 14 14 N 1.32008 * 120.84047 * 359.97302 * 13 12 11 15 15 C 1.31978 * 121.91486 * 0.02810 * 14 13 12 16 16 C 1.50691 * 119.58220 * 179.97438 * 15 14 13 17 17 C 1.53003 * 117.49942 * 163.61759 * 16 15 14 18 18 C 1.52999 * 60.00294 * 252.51299 * 17 16 15 19 19 C 1.37922 * 120.83762 * 359.71223 * 15 14 13 20 20 H 0.96993 * 120.00031 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47083 * 59.99434 * 9 7 2 22 22 H 1.09001 * 109.46875 * 299.99697 * 9 7 2 23 23 H 0.97005 * 119.99891 * 359.72072 * 10 9 7 24 24 H 1.07997 * 120.47102 * 0.02562 * 12 11 10 25 25 H 1.08002 * 119.57329 * 180.02562 * 13 12 11 26 26 H 1.08995 * 115.55596 * 309.33057 * 16 15 14 27 27 H 1.08997 * 117.49756 * 0.02562 * 17 16 15 28 28 H 1.09000 * 117.49718 * 145.01902 * 17 16 15 29 29 H 1.09000 * 117.50007 * 252.50981 * 18 17 16 30 30 H 1.08997 * 117.51757 * 107.48037 * 18 17 16 31 31 H 1.08001 * 120.46674 * 180.28382 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 1.7392 -4.9248 0.0015 12 6 0.3718 -5.2003 0.0058 13 6 -0.0469 -6.5141 0.0059 14 7 0.8276 -7.5030 0.0014 15 6 2.1290 -7.2836 -0.0028 16 6 3.0804 -8.4521 -0.0073 17 6 4.5349 -8.1775 -0.3948 18 6 3.6135 -8.9239 -1.3617 19 6 2.6293 -5.9983 -0.0086 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6241 -2.5568 0.8903 23 1 3.1568 -3.4355 -0.0017 24 1 -0.3489 -4.3960 0.0091 25 1 -1.1037 -6.7367 0.0088 26 1 2.8966 -9.2111 0.7531 27 1 4.8036 -7.1515 -0.6460 28 1 5.3082 -8.7556 0.1111 29 1 3.7807 -9.9931 -1.4921 30 1 3.2758 -8.3892 -2.2494 31 1 3.6953 -5.8257 -0.0166 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260409501.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:09 Heat of formation + Delta-G solvation = 49.241087 kcal Electronic energy + Delta-G solvation = -13705.358842 eV Core-core repulsion = 11372.889465 eV Total energy + Delta-G solvation = -2332.469377 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.83320 -36.99838 -35.46349 -32.87643 -30.39280 -29.99242 -26.72162 -24.29113 -22.92473 -22.28352 -21.91539 -19.80309 -17.54908 -16.22594 -16.01222 -15.14786 -15.01850 -14.60233 -14.27313 -13.63695 -13.37988 -13.20984 -12.59057 -12.26308 -11.89071 -11.51618 -11.08922 -11.00376 -10.83611 -10.58565 -10.36476 -10.29264 -10.02078 -9.48423 -8.88145 -8.68161 -8.42236 -6.97843 -6.29004 -4.35026 1.68414 2.17554 3.17145 3.24872 3.28050 3.81189 4.14897 4.35590 4.39695 4.58331 4.93467 5.05395 5.08596 5.26520 5.35744 5.57596 5.71432 5.79642 5.83689 6.02980 6.12842 6.18742 6.28491 6.54452 6.69266 6.98245 7.24732 7.29858 7.53720 7.83395 8.09891 8.50210 8.65598 8.77266 9.31844 10.81610 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.048717 B = 0.005702 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.610525 B = 4909.677178 C = 5399.814997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.248 3.752 10 N -0.714 5.714 11 C 0.264 3.736 12 C -0.257 4.257 13 C 0.135 3.865 14 N -0.542 5.542 15 C 0.187 3.813 16 C -0.098 4.098 17 C -0.177 4.177 18 C -0.165 4.165 19 C -0.264 4.264 20 H 0.266 0.734 21 H 0.024 0.976 22 H 0.024 0.976 23 H 0.394 0.606 24 H 0.133 0.867 25 H 0.147 0.853 26 H 0.116 0.884 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.247 -11.993 -0.663 13.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.127 3.873 10 N -0.336 5.336 11 C 0.145 3.855 12 C -0.283 4.283 13 C -0.020 4.020 14 N -0.256 5.256 15 C 0.051 3.949 16 C -0.117 4.117 17 C -0.214 4.214 18 C -0.202 4.202 19 C -0.291 4.291 20 H 0.076 0.924 21 H 0.042 0.958 22 H 0.042 0.958 23 H 0.228 0.772 24 H 0.151 0.849 25 H 0.165 0.835 26 H 0.134 0.866 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.613 -12.482 -0.657 13.324 hybrid contribution 0.957 2.038 0.024 2.252 sum 5.570 -10.444 -0.633 11.854 Atomic orbital electron populations 1.69948 1.06109 1.27409 1.49052 1.24933 0.94952 0.99530 0.94488 0.86331 0.79876 0.82744 0.77842 1.19620 1.20691 1.20690 1.21207 0.93412 0.90294 1.53107 0.91853 1.19209 0.88639 0.82552 0.96937 1.45505 1.09986 1.02422 1.75699 1.18233 0.92871 0.85931 0.88426 1.21684 0.94815 0.98687 1.13136 1.22280 0.98623 0.87891 0.93168 1.67333 1.02093 1.36319 1.19823 1.19800 0.90312 0.91233 0.93595 1.20700 0.93034 0.98207 0.99777 1.23060 0.92577 1.02079 1.03669 1.22916 1.03307 1.00407 0.93599 1.21230 0.99665 0.92201 1.15980 0.92390 0.95849 0.95817 0.77228 0.84886 0.83548 0.86619 0.88259 0.88480 0.88592 0.88796 0.85837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.10 13.29 55.43 0.74 -24.37 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.54 -14.39 9.28 -34.44 -0.32 -14.71 16 8 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 9 C 0.25 6.15 4.70 -5.20 -0.02 6.13 16 10 N -0.71 -14.91 5.71 -59.64 -0.34 -15.25 16 11 C 0.26 5.14 6.70 -83.61 -0.56 4.58 16 12 C -0.26 -4.89 9.38 -39.25 -0.37 -5.26 16 13 C 0.14 2.33 11.17 -17.61 -0.20 2.13 16 14 N -0.54 -9.64 10.27 -9.57 -0.10 -9.74 16 15 C 0.19 3.12 6.46 -82.65 -0.53 2.59 16 16 C -0.10 -1.30 6.22 -91.77 -0.57 -1.87 16 17 C -0.18 -1.92 9.79 -26.73 -0.26 -2.18 16 18 C -0.16 -1.86 10.23 -26.73 -0.27 -2.13 16 19 C -0.26 -4.54 9.25 -39.25 -0.36 -4.91 16 20 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 21 H 0.02 0.63 8.00 -51.93 -0.42 0.21 16 22 H 0.02 0.64 7.99 -51.93 -0.41 0.22 16 23 H 0.39 7.59 8.35 -40.82 -0.34 7.25 16 24 H 0.13 2.60 6.90 -52.49 -0.36 2.24 16 25 H 0.15 2.07 8.06 -52.49 -0.42 1.64 16 26 H 0.12 1.43 8.14 -51.93 -0.42 1.00 16 27 H 0.10 1.11 6.38 -51.93 -0.33 0.78 16 28 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.12 1.87 6.24 -52.49 -0.33 1.54 16 LS Contribution 269.15 15.07 4.06 4.06 Total: -1.00 -28.71 269.15 -8.08 -36.78 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -3.84 Total: 6.99 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -3.57 Total: -13.98 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 0.30 Total: -49.35 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.71 -8.08 -36.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260409501.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.024 kcal (2) G-P(sol) polarization free energy of solvation -28.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds