Wall clock time and date at job start Mon Mar 30 2020 02:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00013 * 2 1 4 4 H 1.48493 * 109.47023 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46863 * 299.99769 * 3 2 1 6 6 H 1.48496 * 109.47155 * 59.99903 * 3 2 1 7 7 C 1.37880 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99814 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00455 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47425 * 180.02562 * 9 7 2 11 11 C 1.39165 * 120.00227 * 180.02562 * 10 9 7 12 12 C 1.39490 * 120.86243 * 359.72050 * 11 10 9 13 13 C 1.37881 * 119.06747 * 180.02562 * 12 11 10 14 14 N 1.32008 * 120.84047 * 359.97302 * 13 12 11 15 15 C 1.31978 * 121.91486 * 0.02810 * 14 13 12 16 16 C 1.50691 * 119.58220 * 179.97438 * 15 14 13 17 17 C 1.53003 * 117.49942 * 163.61759 * 16 15 14 18 18 C 1.52999 * 60.00294 * 252.51299 * 17 16 15 19 19 C 1.37922 * 120.83762 * 359.71223 * 15 14 13 20 20 H 0.96993 * 120.00031 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47083 * 59.99434 * 9 7 2 22 22 H 1.09001 * 109.46875 * 299.99697 * 9 7 2 23 23 H 0.97005 * 119.99891 * 359.72072 * 10 9 7 24 24 H 1.07997 * 120.47102 * 0.02562 * 12 11 10 25 25 H 1.08002 * 119.57329 * 180.02562 * 13 12 11 26 26 H 1.08995 * 115.55596 * 309.33057 * 16 15 14 27 27 H 1.08997 * 117.49756 * 0.02562 * 17 16 15 28 28 H 1.09000 * 117.49718 * 145.01902 * 17 16 15 29 29 H 1.09000 * 117.50007 * 252.50981 * 18 17 16 30 30 H 1.08997 * 117.51757 * 107.48037 * 18 17 16 31 31 H 1.08001 * 120.46674 * 180.28382 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 1.7392 -4.9248 0.0015 12 6 0.3718 -5.2003 0.0058 13 6 -0.0469 -6.5141 0.0059 14 7 0.8276 -7.5030 0.0014 15 6 2.1290 -7.2836 -0.0028 16 6 3.0804 -8.4521 -0.0073 17 6 4.5349 -8.1775 -0.3948 18 6 3.6135 -8.9239 -1.3617 19 6 2.6293 -5.9983 -0.0086 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6241 -2.5568 0.8903 23 1 3.1568 -3.4355 -0.0017 24 1 -0.3489 -4.3960 0.0091 25 1 -1.1037 -6.7367 0.0088 26 1 2.8966 -9.2111 0.7531 27 1 4.8036 -7.1515 -0.6460 28 1 5.3082 -8.7556 0.1111 29 1 3.7807 -9.9931 -1.4921 30 1 3.2758 -8.3892 -2.2494 31 1 3.6953 -5.8257 -0.0166 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260409501.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:08 Heat of formation + Delta-G solvation = 31.896027 kcal Electronic energy + Delta-G solvation = -13706.110980 eV Core-core repulsion = 11372.889465 eV Total energy + Delta-G solvation = -2333.221515 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.20847 -38.15670 -37.00592 -34.83947 -31.85191 -31.55209 -28.58630 -25.73918 -24.40337 -23.77769 -22.94474 -21.13237 -19.26828 -17.81492 -17.52845 -16.67018 -16.41978 -16.13150 -15.48690 -15.20262 -14.92900 -14.74853 -14.23197 -14.13916 -13.10073 -12.86512 -12.86280 -12.46646 -12.26144 -12.02639 -11.86441 -11.48100 -11.41882 -11.28090 -10.71139 -10.29336 -9.76106 -8.61788 -8.34578 -6.48859 0.29840 0.69958 1.40113 1.40491 1.53551 2.30558 2.68085 2.82074 3.01147 3.09458 3.42184 3.90064 4.02392 4.12138 4.27605 4.33031 4.44317 4.55440 4.81602 4.86987 4.94730 5.05656 5.08927 5.21730 5.24077 5.30046 5.31765 5.48513 5.78323 5.88121 6.32939 6.63204 6.98739 7.24171 7.26097 8.77402 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.048717 B = 0.005702 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.610525 B = 4909.677178 C = 5399.814997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 0.978 3.022 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.559 4.559 8 H 0.072 0.928 9 C 0.268 3.732 10 N -0.718 5.718 11 C 0.243 3.757 12 C -0.278 4.278 13 C 0.140 3.860 14 N -0.550 5.550 15 C 0.185 3.815 16 C -0.121 4.121 17 C -0.161 4.161 18 C -0.157 4.157 19 C -0.261 4.261 20 H 0.270 0.730 21 H -0.004 1.004 22 H -0.004 1.004 23 H 0.401 0.599 24 H 0.117 0.883 25 H 0.176 0.824 26 H 0.126 0.874 27 H 0.095 0.905 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.096 -12.941 -0.721 14.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.802 3.198 4 H -0.184 1.184 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.597 4.597 8 H 0.090 0.910 9 C 0.146 3.854 10 N -0.342 5.342 11 C 0.127 3.873 12 C -0.304 4.304 13 C -0.015 4.015 14 N -0.264 5.264 15 C 0.048 3.952 16 C -0.140 4.140 17 C -0.198 4.198 18 C -0.195 4.195 19 C -0.286 4.286 20 H 0.079 0.921 21 H 0.014 0.986 22 H 0.014 0.986 23 H 0.237 0.763 24 H 0.135 0.865 25 H 0.193 0.807 26 H 0.144 0.856 27 H 0.113 0.887 28 H 0.141 0.859 29 H 0.138 0.862 30 H 0.100 0.900 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.481 -13.478 -0.716 14.973 hybrid contribution 0.350 2.182 0.033 2.210 sum 6.832 -11.296 -0.683 13.219 Atomic orbital electron populations 1.70074 1.07840 1.28558 1.49903 1.25907 0.95800 1.03400 0.93816 0.85198 0.78881 0.77828 0.77879 1.18433 1.20235 1.20247 1.21587 0.94036 0.91097 1.52996 0.90957 1.18675 0.88676 0.83776 0.94309 1.45136 1.09572 1.02147 1.77391 1.18517 0.93608 0.85828 0.89343 1.21744 0.94717 0.99276 1.14653 1.22696 1.00098 0.86972 0.91770 1.67473 1.02817 1.36270 1.19820 1.20424 0.90571 0.92350 0.91806 1.20798 0.93925 0.97633 1.01652 1.23178 0.91711 1.02280 1.02656 1.23003 1.02511 1.01832 0.92131 1.21459 1.00445 0.91690 1.15037 0.92113 0.98628 0.98602 0.76342 0.86503 0.80725 0.85586 0.88662 0.85869 0.86189 0.90004 0.83725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.48 13.29 21.45 0.28 -53.20 16 2 C 0.01 0.59 5.46 84.65 0.46 1.06 16 3 Si 0.98 41.95 29.54 68.60 2.03 43.98 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 5 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.56 -30.12 9.28 25.60 0.24 -29.88 16 8 H 0.07 3.67 7.60 -2.91 -0.02 3.65 16 9 C 0.27 13.91 4.70 85.63 0.40 14.31 16 10 N -0.72 -30.67 5.71 -342.62 -1.96 -32.62 16 11 C 0.24 9.61 6.70 38.57 0.26 9.86 16 12 C -0.28 -10.89 9.38 22.49 0.21 -10.68 16 13 C 0.14 4.77 11.17 84.58 0.94 5.72 16 14 N -0.55 -18.95 10.27 -184.20 -1.89 -20.84 16 15 C 0.18 5.89 6.46 42.46 0.27 6.17 16 16 C -0.12 -2.89 6.22 -11.54 -0.07 -2.96 16 17 C -0.16 -2.96 9.79 30.59 0.30 -2.66 16 18 C -0.16 -3.09 10.23 30.60 0.31 -2.77 16 19 C -0.26 -8.71 9.25 22.49 0.21 -8.51 16 20 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 21 H 0.00 -0.23 8.00 -2.39 -0.02 -0.25 16 22 H 0.00 -0.22 7.99 -2.39 -0.02 -0.24 16 23 H 0.40 15.54 8.35 -92.70 -0.77 14.77 16 24 H 0.12 4.89 6.90 -2.91 -0.02 4.87 16 25 H 0.18 4.77 8.06 -2.91 -0.02 4.75 16 26 H 0.13 2.75 8.14 -2.39 -0.02 2.74 16 27 H 0.10 1.84 6.38 -2.39 -0.02 1.83 16 28 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.15 4.13 6.24 -2.91 -0.02 4.11 16 Total: -1.00 -61.91 269.15 2.36 -59.55 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.36 Total: 23.49 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: 3.54 Total: -20.34 kcal Atomic # 7 Polarization: -103.10 SS G_CDS: -3.56 Total: -106.66 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -61.91 2.36 -59.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260409501.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.441 kcal (2) G-P(sol) polarization free energy of solvation -61.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds