Wall clock time and date at job start Mon Mar 30 2020 02:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86803 * 119.99908 * 2 1 4 4 H 1.48498 * 109.47095 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47343 * 300.00427 * 3 2 1 6 6 H 1.48492 * 109.47193 * 60.00613 * 3 2 1 7 7 C 1.38813 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00139 * 179.97438 * 7 2 1 9 9 N 1.36914 * 120.00247 * 359.97438 * 7 2 1 10 10 C 1.38834 * 120.00298 * 180.02562 * 9 7 2 11 11 C 1.39098 * 119.80587 * 0.02562 * 10 9 7 12 12 C 1.38719 * 119.27245 * 180.02562 * 11 10 9 13 13 C 1.38117 * 118.58231 * 359.79480 * 12 11 10 14 14 C 1.38676 * 119.06447 * 0.29758 * 13 12 11 15 15 N 1.31700 * 121.15563 * 359.80987 * 14 13 12 16 16 C 1.50496 * 122.46513 * 180.35839 * 13 12 11 17 17 C 1.52791 * 110.47976 * 342.25711 * 16 13 12 18 18 C 1.53304 * 108.52747 * 51.11323 * 17 16 13 19 19 C 1.50365 * 118.63194 * 179.50976 * 12 11 10 20 20 H 0.97001 * 120.00064 * 359.97438 * 1 2 3 21 21 H 0.97000 * 119.99742 * 0.02562 * 9 7 2 22 22 H 1.07996 * 120.36571 * 0.03517 * 11 10 9 23 23 H 1.08002 * 119.42290 * 179.81938 * 14 13 12 24 24 H 1.09006 * 109.30217 * 102.56763 * 16 13 12 25 25 H 1.09005 * 109.30601 * 221.94919 * 16 13 12 26 26 H 1.08991 * 109.62661 * 170.82658 * 17 16 13 27 27 H 1.09000 * 109.62385 * 291.40432 * 17 16 13 28 28 H 1.08999 * 109.64207 * 170.40868 * 18 17 16 29 29 H 1.09002 * 109.63670 * 49.79960 * 18 17 16 30 30 H 1.09001 * 109.30653 * 282.98992 * 19 12 11 31 31 H 1.09001 * 109.30704 * 42.38648 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8908 2.3966 -1.2124 6 1 1.8910 2.3964 1.2125 7 6 2.0097 -1.2022 -0.0005 8 1 3.0898 -1.2022 -0.0010 9 7 1.3252 -2.3879 -0.0005 10 6 2.0194 -3.5902 -0.0005 11 6 3.4103 -3.5855 0.0000 12 6 4.0927 -4.7933 -0.0005 13 6 3.3618 -5.9652 0.0027 14 6 1.9768 -5.8954 0.0001 15 7 1.3531 -4.7355 -0.0016 16 6 4.0117 -7.3226 0.0104 17 6 5.4732 -7.2180 -0.4225 18 6 6.1528 -6.1291 0.4157 19 6 5.5962 -4.7714 -0.0112 20 1 -0.4850 0.8400 0.0004 21 1 0.3552 -2.3879 -0.0005 22 1 3.9531 -2.6519 0.0010 23 1 1.3995 -6.8082 -0.0003 24 1 3.9628 -7.7398 1.0162 25 1 3.4790 -7.9811 -0.6758 26 1 5.9731 -8.1724 -0.2576 27 1 5.5242 -6.9524 -1.4784 28 1 7.2291 -6.1537 0.2452 29 1 5.9425 -6.2954 1.4722 30 1 5.9461 -4.5385 -1.0170 31 1 5.9503 -4.0040 0.6770 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260419805.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:13 Heat of formation + Delta-G solvation = 14.777525 kcal Electronic energy + Delta-G solvation = -14181.780994 eV Core-core repulsion = 11847.817165 eV Total energy + Delta-G solvation = -2333.963829 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.57047 -36.69239 -34.75311 -32.08501 -31.42440 -29.95730 -27.40027 -24.97609 -23.30230 -21.92955 -21.65898 -18.93123 -17.86585 -16.45259 -15.35672 -14.90036 -14.59744 -14.08094 -13.66063 -13.50910 -13.41808 -13.14538 -12.38311 -11.89945 -11.85383 -11.79530 -11.36915 -11.25333 -10.63088 -10.55281 -10.41745 -10.35142 -10.13489 -9.94390 -8.70324 -8.42625 -8.26679 -6.83717 -6.60073 -3.80880 2.37159 2.46072 3.12971 3.14472 3.18692 3.99345 4.68847 4.92918 5.13062 5.16872 5.17973 5.24845 5.59155 5.69258 5.80380 5.90709 5.93687 5.98776 6.15832 6.25210 6.28773 6.35518 6.50243 6.57984 6.77605 6.86458 7.13726 7.21207 7.46287 7.65599 7.96155 8.63226 8.98467 9.35195 9.73050 10.56861 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.044944 B = 0.007326 C = 0.006369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.854884 B = 3820.895550 C = 4395.277488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.022 3.978 3 Si 0.935 3.065 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.537 5.537 10 C 0.364 3.636 11 C -0.264 4.264 12 C 0.010 3.990 13 C -0.266 4.266 14 C 0.162 3.838 15 N -0.575 5.575 16 C -0.049 4.049 17 C -0.116 4.116 18 C -0.115 4.115 19 C -0.079 4.079 20 H 0.275 0.725 21 H 0.403 0.597 22 H 0.120 0.880 23 H 0.132 0.868 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.142 -8.501 -0.021 12.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.182 4.182 3 Si 0.761 3.239 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.144 5.144 10 C 0.122 3.878 11 C -0.292 4.292 12 C 0.003 3.997 13 C -0.275 4.275 14 C -0.003 4.003 15 N -0.295 5.295 16 C -0.087 4.087 17 C -0.154 4.154 18 C -0.152 4.152 19 C -0.116 4.116 20 H 0.085 0.915 21 H 0.238 0.762 22 H 0.138 0.862 23 H 0.150 0.850 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.094 -7.888 -0.023 11.302 hybrid contribution 0.723 0.915 -0.002 1.166 sum 8.817 -6.973 -0.025 11.241 Atomic orbital electron populations 1.69712 1.06034 1.28535 1.48030 1.25336 0.95765 0.99936 0.97209 0.85723 0.79376 0.80760 0.78056 1.19127 1.20462 1.20457 1.19776 0.93014 0.82230 1.48012 0.87853 1.40777 1.08615 1.01082 1.63881 1.18267 0.88619 0.85998 0.94915 1.21036 0.93490 0.97633 1.17059 1.19271 0.94195 0.92262 0.94006 1.19550 0.94345 0.94166 1.19451 1.22006 0.91028 0.94131 0.93111 1.67026 1.40607 0.97538 1.24331 1.19972 0.94424 0.94250 1.00058 1.21507 0.96058 0.97978 0.99843 1.21507 0.98703 0.94950 1.00078 1.20388 0.92251 0.97441 1.01516 0.91461 0.76194 0.86167 0.85015 0.92750 0.92495 0.92504 0.92095 0.92325 0.91915 0.91123 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.21 13.05 55.49 0.72 -23.48 16 2 C 0.02 0.56 5.50 -17.45 -0.10 0.47 16 3 Si 0.93 19.94 29.55 -169.99 -5.02 14.92 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 7 C -0.30 -7.91 9.55 -15.07 -0.14 -8.06 16 8 H 0.10 2.60 5.66 -52.48 -0.30 2.30 16 9 N -0.54 -14.20 5.44 -11.18 -0.06 -14.26 16 10 C 0.36 9.00 7.62 -155.12 -1.18 7.82 16 11 C -0.26 -5.93 8.96 -39.08 -0.35 -6.28 16 12 C 0.01 0.19 5.74 -104.65 -0.60 -0.41 16 13 C -0.27 -4.89 5.74 -104.60 -0.60 -5.49 16 14 C 0.16 3.22 10.79 -17.45 -0.19 3.03 16 15 N -0.57 -13.53 10.39 -12.36 -0.13 -13.65 16 16 C -0.05 -0.70 5.71 -28.09 -0.16 -0.86 16 17 C -0.12 -1.45 5.97 -26.68 -0.16 -1.61 16 18 C -0.11 -1.46 5.98 -26.67 -0.16 -1.62 16 19 C -0.08 -1.20 5.71 -28.14 -0.16 -1.36 16 20 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 21 H 0.40 11.05 8.01 -40.82 -0.33 10.72 16 22 H 0.12 2.67 5.94 -52.49 -0.31 2.36 16 23 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 258.02 15.07 3.89 3.89 Total: -1.00 -28.07 258.02 -8.27 -36.34 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -3.87 Total: 10.63 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -3.80 Total: -14.38 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: 0.54 Total: -51.40 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.07 -8.27 -36.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260419805.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.119 kcal (2) G-P(sol) polarization free energy of solvation -28.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds