Wall clock time and date at job start Mon Mar 30 2020 02:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86803 * 119.99908 * 2 1 4 4 H 1.48498 * 109.47095 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47343 * 300.00427 * 3 2 1 6 6 H 1.48492 * 109.47193 * 60.00613 * 3 2 1 7 7 C 1.38813 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00139 * 179.97438 * 7 2 1 9 9 N 1.36914 * 120.00247 * 359.97438 * 7 2 1 10 10 C 1.38834 * 120.00298 * 180.02562 * 9 7 2 11 11 C 1.39098 * 119.80587 * 0.02562 * 10 9 7 12 12 C 1.38719 * 119.27245 * 180.02562 * 11 10 9 13 13 C 1.38117 * 118.58231 * 359.79480 * 12 11 10 14 14 C 1.38676 * 119.06447 * 0.29758 * 13 12 11 15 15 N 1.31700 * 121.15563 * 359.80987 * 14 13 12 16 16 C 1.50496 * 122.46513 * 180.35839 * 13 12 11 17 17 C 1.52791 * 110.47976 * 342.25711 * 16 13 12 18 18 C 1.53304 * 108.52747 * 51.11323 * 17 16 13 19 19 C 1.50365 * 118.63194 * 179.50976 * 12 11 10 20 20 H 0.97001 * 120.00064 * 359.97438 * 1 2 3 21 21 H 0.97000 * 119.99742 * 0.02562 * 9 7 2 22 22 H 1.07996 * 120.36571 * 0.03517 * 11 10 9 23 23 H 1.08002 * 119.42290 * 179.81938 * 14 13 12 24 24 H 1.09006 * 109.30217 * 102.56763 * 16 13 12 25 25 H 1.09005 * 109.30601 * 221.94919 * 16 13 12 26 26 H 1.08991 * 109.62661 * 170.82658 * 17 16 13 27 27 H 1.09000 * 109.62385 * 291.40432 * 17 16 13 28 28 H 1.08999 * 109.64207 * 170.40868 * 18 17 16 29 29 H 1.09002 * 109.63670 * 49.79960 * 18 17 16 30 30 H 1.09001 * 109.30653 * 282.98992 * 19 12 11 31 31 H 1.09001 * 109.30704 * 42.38648 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8908 2.3966 -1.2124 6 1 1.8910 2.3964 1.2125 7 6 2.0097 -1.2022 -0.0005 8 1 3.0898 -1.2022 -0.0010 9 7 1.3252 -2.3879 -0.0005 10 6 2.0194 -3.5902 -0.0005 11 6 3.4103 -3.5855 0.0000 12 6 4.0927 -4.7933 -0.0005 13 6 3.3618 -5.9652 0.0027 14 6 1.9768 -5.8954 0.0001 15 7 1.3531 -4.7355 -0.0016 16 6 4.0117 -7.3226 0.0104 17 6 5.4732 -7.2180 -0.4225 18 6 6.1528 -6.1291 0.4157 19 6 5.5962 -4.7714 -0.0112 20 1 -0.4850 0.8400 0.0004 21 1 0.3552 -2.3879 -0.0005 22 1 3.9531 -2.6519 0.0010 23 1 1.3995 -6.8082 -0.0003 24 1 3.9628 -7.7398 1.0162 25 1 3.4790 -7.9811 -0.6758 26 1 5.9731 -8.1724 -0.2576 27 1 5.5242 -6.9524 -1.4784 28 1 7.2291 -6.1537 0.2452 29 1 5.9425 -6.2954 1.4722 30 1 5.9461 -4.5385 -1.0170 31 1 5.9503 -4.0040 0.6770 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260419805.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:13 Heat of formation + Delta-G solvation = -1.235244 kcal Electronic energy + Delta-G solvation = -14182.475360 eV Core-core repulsion = 11847.817165 eV Total energy + Delta-G solvation = -2334.658195 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.18513 -38.18013 -36.43840 -33.81747 -32.94675 -31.41594 -28.97382 -26.79136 -24.70824 -23.35873 -23.17650 -20.27688 -19.73115 -18.12196 -17.11115 -16.25674 -16.24235 -15.47939 -15.29442 -15.15183 -14.75036 -14.57410 -13.77428 -13.55333 -13.26899 -13.18222 -12.90798 -12.84570 -12.23066 -12.07411 -11.91951 -11.61864 -11.56887 -11.19395 -10.54543 -10.03826 -9.95775 -8.61577 -8.50465 -5.80129 0.68410 0.81268 1.39821 1.46331 1.54705 2.23847 2.88556 3.17015 3.42775 3.88083 3.98788 4.15979 4.17108 4.34996 4.47844 4.65254 4.76708 4.81568 4.96101 4.99729 5.11420 5.19261 5.20467 5.25329 5.31538 5.37501 5.55735 5.58960 5.77528 5.92685 6.29889 6.71406 7.16130 7.45014 7.86992 8.69293 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.044944 B = 0.007326 C = 0.006369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.854884 B = 3820.895550 C = 4395.277488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.031 4.031 3 Si 1.005 2.995 4 H -0.255 1.255 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.318 4.318 8 H 0.107 0.893 9 N -0.570 5.570 10 C 0.346 3.654 11 C -0.285 4.285 12 C 0.008 3.992 13 C -0.246 4.246 14 C 0.145 3.855 15 N -0.602 5.602 16 C -0.053 4.053 17 C -0.115 4.115 18 C -0.111 4.111 19 C -0.081 4.081 20 H 0.276 0.724 21 H 0.389 0.611 22 H 0.114 0.886 23 H 0.167 0.833 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.909 -10.676 -0.029 15.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.230 4.230 3 Si 0.828 3.172 4 H -0.179 1.179 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.448 4.448 8 H 0.125 0.875 9 N -0.179 5.179 10 C 0.107 3.893 11 C -0.313 4.313 12 C 0.000 4.000 13 C -0.253 4.253 14 C -0.018 4.018 15 N -0.322 5.322 16 C -0.090 4.090 17 C -0.152 4.152 18 C -0.149 4.149 19 C -0.118 4.118 20 H 0.085 0.915 21 H 0.222 0.778 22 H 0.132 0.868 23 H 0.184 0.816 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.915 -10.149 -0.031 14.904 hybrid contribution -0.032 1.211 0.001 1.212 sum 10.883 -8.938 -0.030 14.083 Atomic orbital electron populations 1.69834 1.07595 1.29206 1.50467 1.26291 0.96592 1.03143 0.96959 0.84679 0.78495 0.76149 0.77915 1.17899 1.20180 1.20171 1.20054 0.93282 0.82871 1.48549 0.87545 1.40777 1.07811 1.01769 1.67566 1.18679 0.89633 0.86089 0.94858 1.21202 0.92780 0.98994 1.18276 1.19834 0.96763 0.91302 0.92077 1.20204 0.93956 0.96321 1.14851 1.22745 0.92500 0.94105 0.92406 1.67045 1.41815 0.98323 1.25059 1.20134 0.95726 0.91398 1.01762 1.21538 0.94728 0.99448 0.99511 1.21532 1.00347 0.93004 0.99989 1.20506 0.89120 0.99724 1.02433 0.91507 0.77825 0.86790 0.81598 0.91054 0.90568 0.89380 0.92339 0.89499 0.91975 0.90058 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.44 13.05 21.65 0.28 -53.16 16 2 C -0.03 -1.67 5.50 84.87 0.47 -1.20 16 3 Si 1.01 41.99 29.55 68.60 2.03 44.02 16 4 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 5 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 6 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 7 C -0.32 -17.55 9.55 84.04 0.80 -16.75 16 8 H 0.11 5.58 5.66 -2.91 -0.02 5.56 16 9 N -0.57 -31.84 5.44 -189.29 -1.03 -32.87 16 10 C 0.35 17.70 7.62 133.08 1.01 18.71 16 11 C -0.28 -12.93 8.96 22.59 0.20 -12.73 16 12 C 0.01 0.28 5.74 -19.88 -0.11 0.16 16 13 C -0.25 -8.35 5.74 -19.85 -0.11 -8.46 16 14 C 0.14 5.52 10.79 84.82 0.91 6.43 16 15 N -0.60 -28.71 10.39 -193.03 -2.01 -30.71 16 16 C -0.05 -1.24 5.71 29.71 0.17 -1.07 16 17 C -0.11 -2.25 5.97 30.63 0.18 -2.07 16 18 C -0.11 -2.30 5.98 30.64 0.18 -2.12 16 19 C -0.08 -2.22 5.71 29.68 0.17 -2.05 16 20 H 0.28 14.75 8.31 -92.71 -0.77 13.98 16 21 H 0.39 22.88 8.01 -92.71 -0.74 22.14 16 22 H 0.11 5.21 5.94 -2.91 -0.02 5.19 16 23 H 0.17 5.04 8.06 -2.91 -0.02 5.01 16 24 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 25 H 0.08 1.57 8.13 -2.38 -0.02 1.55 16 26 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 28 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16 30 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -63.80 258.02 3.55 -60.26 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: 0.39 Total: 33.61 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: 3.88 Total: -21.14 kcal Atomic # 7 Polarization: -113.99 SS G_CDS: -2.75 Total: -116.74 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -63.80 3.55 -60.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260419805.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.022 kcal (2) G-P(sol) polarization free energy of solvation -63.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds