Wall clock time and date at job start Mon Mar 30 2020 03:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38886 * 120.74572 * 2 1 4 4 C 1.38121 * 119.33670 * 180.02562 * 3 2 1 5 5 N 1.31900 * 120.86542 * 359.72632 * 4 3 2 6 6 C 1.32492 * 121.61689 * 0.56085 * 5 4 3 7 7 N 1.38845 * 119.70833 * 179.71040 * 6 5 4 8 8 C 1.36920 * 119.99981 * 4.73151 * 7 6 5 9 9 H 1.07999 * 119.99804 * 220.47232 * 8 7 6 10 10 C 1.38814 * 120.00008 * 40.47205 * 8 7 6 11 11 N 1.31569 * 119.99907 * 18.58088 * 10 8 7 12 12 Si 1.86798 * 120.00128 * 198.58102 * 10 8 7 13 13 H 1.48500 * 109.46867 * 60.00178 * 12 10 8 14 14 H 1.48498 * 109.47253 * 180.02562 * 12 10 8 15 15 H 1.48493 * 109.47017 * 300.00319 * 12 10 8 16 16 C 1.46501 * 120.00220 * 184.72724 * 7 6 5 17 17 C 1.52998 * 117.52003 * 176.74805 * 16 7 6 18 18 C 1.52999 * 117.49875 * 245.38110 * 16 7 6 19 19 C 1.38310 * 120.74430 * 180.02562 * 2 1 3 20 20 H 1.09002 * 109.47264 * 269.98036 * 1 2 3 21 21 H 1.09003 * 109.46867 * 29.97817 * 1 2 3 22 22 H 1.08997 * 109.46985 * 149.97612 * 1 2 3 23 23 H 1.08001 * 120.33255 * 0.02562 * 3 2 1 24 24 H 1.08003 * 119.56757 * 179.97438 * 4 3 2 25 25 H 0.96999 * 120.00233 * 175.11743 * 11 10 8 26 26 H 1.09003 * 115.54498 * 31.05293 * 16 7 6 27 27 H 1.09000 * 117.50183 * 214.97589 * 17 16 7 28 28 H 1.09002 * 117.49442 * 359.97438 * 17 16 7 29 29 H 1.08990 * 117.49844 * 359.97438 * 18 16 7 30 30 H 1.09001 * 117.49235 * 144.99756 * 18 16 7 31 31 H 1.07999 * 120.45718 * 359.95880 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2171 1.1936 0.0000 4 6 3.5979 1.1597 -0.0005 5 7 4.2465 0.0112 0.0044 6 6 3.6057 -1.1484 -0.0011 7 7 4.3284 -2.3340 -0.0017 8 6 5.6934 -2.3037 0.1011 9 1 6.2948 -2.9746 -0.4944 10 6 6.3043 -1.4106 0.9707 11 7 5.6105 -0.8618 1.9445 12 14 8.1114 -0.9880 0.7582 13 1 8.3246 -0.3861 -0.5825 14 1 8.5199 -0.0193 1.8069 15 1 8.9264 -2.2232 0.8815 16 6 3.6305 -3.6173 -0.1123 17 6 4.4863 -4.8835 -0.1840 18 6 3.6980 -4.5639 1.0879 19 6 2.2141 -1.1887 -0.0005 20 1 -0.3634 -0.0004 1.0277 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8897 -0.5142 23 1 1.6948 2.1390 0.0004 24 1 4.1538 2.0857 -0.0010 25 1 6.0526 -0.2934 2.5944 26 1 2.7059 -3.6014 -0.6894 27 1 4.1248 -5.7007 -0.8082 28 1 5.5689 -4.7618 -0.1493 29 1 4.2620 -4.2320 1.9594 30 1 2.8178 -5.1707 1.3003 31 1 1.6939 -2.1351 -0.0003 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260447151.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:50 Heat of formation + Delta-G solvation = 66.362463 kcal Electronic energy + Delta-G solvation = -14719.571062 eV Core-core repulsion = 12387.844124 eV Total energy + Delta-G solvation = -2331.726938 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.73539 -38.66477 -35.59502 -33.95767 -33.24690 -30.16918 -28.35229 -26.51413 -24.11176 -23.17823 -22.27003 -21.62041 -18.93256 -17.81762 -17.00021 -16.38596 -16.31208 -15.69410 -15.38560 -14.86118 -14.54042 -13.92868 -13.78671 -13.24681 -13.15614 -12.98830 -12.73432 -12.70136 -12.30992 -12.07191 -12.06357 -11.68120 -11.17733 -10.71649 -10.20553 -9.88176 -9.48386 -8.37908 -7.92724 -5.75974 0.87631 1.08066 1.40052 1.47170 1.50336 2.33726 2.92384 3.10358 3.24604 3.69537 4.05542 4.17106 4.19565 4.27593 4.34710 4.53577 4.74792 4.81061 4.84984 4.87174 4.92045 5.04278 5.13031 5.27179 5.37715 5.44285 5.49959 5.63503 5.88417 6.15652 6.36004 6.97736 7.34927 7.83953 8.21721 8.92994 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.024012 B = 0.013667 C = 0.009352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.820212 B = 2048.232873 C = 2993.317403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.021 4.021 3 C -0.286 4.286 4 C 0.122 3.878 5 N -0.532 5.532 6 C 0.387 3.613 7 N -0.435 5.435 8 C -0.345 4.345 9 H 0.076 0.924 10 C 0.033 3.967 11 N -0.865 5.865 12 Si 0.970 3.030 13 H -0.279 1.279 14 H -0.289 1.289 15 H -0.267 1.267 16 C 0.061 3.939 17 C -0.162 4.162 18 C -0.189 4.189 19 C -0.284 4.284 20 H 0.076 0.924 21 H 0.081 0.919 22 H 0.073 0.927 23 H 0.138 0.862 24 H 0.141 0.859 25 H 0.257 0.743 26 H 0.127 0.873 27 H 0.126 0.874 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.118 0.882 31 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.400 -1.938 -3.267 8.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.028 4.028 3 C -0.310 4.310 4 C -0.040 4.040 5 N -0.250 5.250 6 C 0.150 3.850 7 N -0.129 5.129 8 C -0.472 4.472 9 H 0.093 0.907 10 C -0.173 4.173 11 N -0.499 5.499 12 Si 0.796 3.204 13 H -0.205 1.205 14 H -0.214 1.214 15 H -0.192 1.192 16 C -0.045 4.045 17 C -0.200 4.200 18 C -0.228 4.228 19 C -0.311 4.311 20 H 0.095 0.905 21 H 0.100 0.900 22 H 0.092 0.908 23 H 0.155 0.845 24 H 0.158 0.842 25 H 0.066 0.934 26 H 0.144 0.856 27 H 0.144 0.856 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.136 0.864 31 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.346 -2.048 -3.134 7.368 hybrid contribution 0.432 0.490 0.395 0.763 sum -5.914 -1.558 -2.739 6.701 Atomic orbital electron populations 1.20729 0.88457 1.03555 1.02829 1.20239 0.97438 0.91964 0.93176 1.21558 0.94705 0.98564 1.16210 1.22585 0.92615 0.95135 0.93713 1.67232 1.41015 0.97698 1.19082 1.18585 0.87928 0.86782 0.91687 1.41716 1.04377 0.99943 1.66855 1.19090 0.81225 1.23662 1.23265 0.90657 1.25806 1.01914 0.96264 0.93347 1.70006 1.37633 1.30083 1.12147 0.85383 0.79499 0.78092 0.77466 1.20450 1.21436 1.19163 1.21874 0.98225 0.81868 1.02539 1.23167 0.98813 0.97437 1.00553 1.23192 1.03048 1.04015 0.92535 1.21221 0.92637 0.99188 1.18014 0.90550 0.89967 0.90758 0.84459 0.84157 0.93395 0.85597 0.85565 0.89907 0.92183 0.86368 0.85811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.64 10.06 71.24 0.72 -1.92 16 2 C -0.02 -0.79 5.91 -19.69 -0.12 -0.91 16 3 C -0.29 -11.26 9.81 22.40 0.22 -11.04 16 4 C 0.12 5.62 11.17 84.65 0.95 6.56 16 5 N -0.53 -28.98 7.07 -193.23 -1.37 -30.35 16 6 C 0.39 20.33 6.54 133.11 0.87 21.20 16 7 N -0.43 -22.61 2.96 -495.47 -1.46 -24.07 16 8 C -0.34 -19.10 8.24 84.04 0.69 -18.41 16 9 H 0.08 4.07 6.79 -2.91 -0.02 4.05 16 10 C 0.03 1.86 4.28 84.87 0.36 2.23 16 11 N -0.86 -51.50 11.42 21.65 0.25 -51.25 16 12 Si 0.97 45.51 29.60 68.60 2.03 47.54 16 13 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 14 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 15 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 16 C 0.06 2.49 5.67 44.99 0.25 2.75 16 17 C -0.16 -5.71 9.80 30.60 0.30 -5.41 16 18 C -0.19 -7.05 10.36 30.60 0.32 -6.73 16 19 C -0.28 -12.60 8.98 22.52 0.20 -12.39 16 20 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 21 H 0.08 1.83 8.10 -2.39 -0.02 1.81 16 22 H 0.07 1.76 8.10 -2.39 -0.02 1.74 16 23 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 24 H 0.14 5.75 8.06 -2.91 -0.02 5.73 16 25 H 0.26 14.87 8.32 -92.71 -0.77 14.10 16 26 H 0.13 4.52 6.84 -2.39 -0.02 4.51 16 27 H 0.13 3.37 8.14 -2.39 -0.02 3.35 16 28 H 0.08 3.30 6.49 -2.39 -0.02 3.28 16 29 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.12 3.48 8.14 -2.39 -0.02 3.46 16 31 H 0.12 4.89 6.35 -2.91 -0.02 4.88 16 Total: -1.00 -67.97 262.86 5.33 -62.65 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 1.12 Total: 19.56 kcal Atomic # 6 Polarization: -28.84 SS G_CDS: 4.77 Total: -24.08 kcal Atomic # 7 Polarization: -103.08 SS G_CDS: -2.58 Total: -105.67 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -67.97 5.33 -62.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260447151.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.008 kcal (2) G-P(sol) polarization free energy of solvation -67.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds