Wall clock time and date at job start Mon Mar 30 2020 02:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.50700 * 109.47062 * 179.97438 * 9 7 2 11 11 N 1.31789 * 119.12459 * 269.72311 * 10 9 7 12 12 C 1.32333 * 120.82244 * 179.76318 * 11 10 9 13 13 C 1.38600 * 119.10162 * 0.50592 * 12 11 10 14 14 C 1.50693 * 120.80083 * 179.77100 * 13 12 11 15 15 C 1.53782 * 113.61210 * 39.11679 * 14 13 12 16 16 C 1.53960 * 87.01658 * 220.04554 * 15 14 13 17 17 C 1.53774 * 113.61760 * 301.50726 * 14 13 12 18 18 C 1.38597 * 118.39668 * 359.75384 * 13 12 11 19 19 N 1.31794 * 119.12228 * 89.99781 * 10 9 7 20 20 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 22 22 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 23 23 H 1.08002 * 120.45056 * 180.28082 * 12 11 10 24 24 H 1.08996 * 112.84885 * 170.30827 * 14 13 12 25 25 H 1.08995 * 113.61590 * 334.55986 * 15 14 13 26 26 H 1.09003 * 113.61367 * 105.47046 * 15 14 13 27 27 H 1.09000 * 113.54059 * 270.80571 * 16 15 14 28 28 H 1.08998 * 113.66398 * 139.93705 * 16 15 14 29 29 H 1.09000 * 113.61897 * 254.53151 * 17 14 13 30 30 H 1.09005 * 113.61333 * 25.34651 * 17 14 13 31 31 H 1.08003 * 120.44701 * 180.02562 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2304 -3.6446 -0.0133 11 7 2.6378 -4.1326 -1.1677 12 6 3.5007 -5.1349 -1.2135 13 6 3.9673 -5.6775 -0.0265 14 6 4.9465 -6.8229 -0.0340 15 6 6.0175 -6.7105 -1.1318 16 6 5.8518 -8.2274 -1.3364 17 6 4.4304 -8.0698 -0.7712 18 6 3.5117 -5.1409 1.1674 19 7 2.6524 -4.1351 1.1348 20 1 -0.4850 -0.8400 0.0004 21 1 0.6281 -2.5591 0.8866 22 1 0.6207 -2.5548 -0.8933 23 1 3.8340 -5.5272 -2.1629 24 1 5.3545 -7.0373 0.9537 25 1 5.7024 -6.1173 -1.9901 26 1 6.9998 -6.4244 -0.7558 27 1 6.5088 -8.8261 -0.7054 28 1 5.8745 -8.5328 -2.3825 29 1 4.1332 -8.8794 -0.1048 30 1 3.6795 -7.8489 -1.5299 31 1 3.8539 -5.5380 2.1117 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260484229.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:46 Heat of formation + Delta-G solvation = 48.807295 kcal Electronic energy + Delta-G solvation = -13913.029180 eV Core-core repulsion = 11580.540992 eV Total energy + Delta-G solvation = -2332.488187 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.73692 -38.57167 -33.85124 -33.10562 -31.82564 -28.37181 -25.77414 -25.13679 -24.17344 -23.17075 -21.40895 -19.44432 -17.10788 -17.03222 -16.32740 -15.49585 -15.10674 -14.34472 -13.73156 -13.31808 -13.11307 -12.87376 -12.59702 -12.44857 -11.96543 -11.52151 -11.40863 -10.67749 -10.65086 -10.60756 -10.59173 -10.27614 -10.10263 -9.82247 -9.10675 -8.56108 -8.36554 -8.32846 -6.39733 -4.08936 1.43694 1.65101 3.45132 3.49272 3.65147 4.26093 4.46144 4.51568 4.54806 4.60791 4.74743 4.75965 4.88788 5.03323 5.14032 5.33069 5.39251 5.54767 5.59823 5.69081 5.73940 5.80194 6.00875 6.13870 6.18539 6.38753 6.93155 7.19193 7.23111 7.62840 8.03345 8.39016 8.81222 8.85930 9.59276 11.00991 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.056320 B = 0.005962 C = 0.005778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.037980 B = 4695.453569 C = 4845.090440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.020 3.980 3 Si 1.077 2.923 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.585 4.585 8 H 0.047 0.953 9 C 0.066 3.934 10 C 0.361 3.639 11 N -0.516 5.516 12 C 0.147 3.853 13 C -0.216 4.216 14 C -0.056 4.056 15 C -0.136 4.136 16 C -0.142 4.142 17 C -0.133 4.133 18 C 0.146 3.854 19 N -0.517 5.517 20 H 0.270 0.730 21 H 0.038 0.962 22 H 0.038 0.962 23 H 0.154 0.846 24 H 0.097 0.903 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.613 -15.239 -1.151 18.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.184 4.184 3 Si 0.905 3.095 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.624 4.624 8 H 0.065 0.935 9 C 0.027 3.973 10 C 0.097 3.903 11 N -0.229 5.229 12 C -0.020 4.020 13 C -0.220 4.220 14 C -0.076 4.076 15 C -0.173 4.173 16 C -0.179 4.179 17 C -0.170 4.170 18 C -0.021 4.021 19 N -0.230 5.230 20 H 0.080 0.920 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.172 0.828 24 H 0.115 0.885 25 H 0.102 0.898 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 9.730 -12.817 -1.149 16.133 hybrid contribution 0.971 -2.481 0.054 2.665 sum 10.701 -15.298 -1.095 18.701 Atomic orbital electron populations 1.70752 1.06754 1.30652 1.46310 1.25861 0.96476 1.02498 0.93539 0.83432 0.74571 0.74716 0.76818 1.21310 1.21547 1.20782 1.21678 0.94076 0.90308 1.56313 0.93459 1.18336 0.92013 0.88650 0.98288 1.24067 0.91906 0.92273 0.82051 1.68440 1.12512 1.10776 1.31217 1.22994 0.90800 0.90607 0.97631 1.21290 1.03172 1.01574 0.95971 1.21278 0.94549 0.92516 0.99259 1.23074 0.98915 0.96545 0.98801 1.22851 0.97144 0.96617 1.01293 1.23003 0.96932 0.97263 0.99826 1.23096 0.90930 0.90566 0.97498 1.68429 1.12318 1.10671 1.31575 0.91993 0.94371 0.94365 0.82836 0.88465 0.89783 0.91247 0.90190 0.91360 0.91359 0.89974 0.82691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.97 13.65 55.43 0.76 -27.21 16 2 C 0.02 0.60 5.46 -17.82 -0.10 0.50 16 3 Si 1.08 25.96 29.90 -169.99 -5.08 20.88 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.58 -17.36 9.09 -34.44 -0.31 -17.67 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.07 1.80 4.72 -29.03 -0.14 1.66 16 10 C 0.36 8.78 6.83 -157.20 -1.07 7.71 16 11 N -0.52 -11.51 10.33 -10.73 -0.11 -11.62 16 12 C 0.15 2.53 9.86 -17.20 -0.17 2.36 16 13 C -0.22 -3.27 5.30 -104.36 -0.55 -3.83 16 14 C -0.06 -0.61 4.00 -90.97 -0.36 -0.97 16 15 C -0.14 -1.31 7.50 -25.82 -0.19 -1.51 16 16 C -0.14 -1.14 8.09 -25.83 -0.21 -1.35 16 17 C -0.13 -1.25 7.55 -25.92 -0.20 -1.45 16 18 C 0.15 2.52 11.02 -17.20 -0.19 2.33 16 19 N -0.52 -11.52 10.33 -10.73 -0.11 -11.63 16 20 H 0.27 8.23 7.22 -40.82 -0.29 7.93 16 21 H 0.04 1.07 8.01 -51.93 -0.42 0.66 16 22 H 0.04 1.07 8.00 -51.93 -0.42 0.66 16 23 H 0.15 2.11 6.87 -52.49 -0.36 1.75 16 24 H 0.10 0.92 8.11 -51.93 -0.42 0.50 16 25 H 0.08 0.85 6.47 -51.93 -0.34 0.52 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.83 7.71 -51.93 -0.40 0.43 16 31 H 0.16 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 265.73 15.07 4.00 4.00 Total: -1.00 -32.90 265.73 -8.00 -40.91 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: -3.96 Total: -3.10 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -3.50 Total: -12.22 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 0.53 Total: -50.46 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -5.08 Total: 20.88 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.90 -8.00 -40.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260484229.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.712 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds