Wall clock time and date at job start Mon Mar 30 2020 02:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86803 * 120.00286 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99927 * 3 2 1 5 5 H 1.48497 * 109.46782 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00204 * 3 2 1 7 7 C 1.38840 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99755 * 179.97438 * 7 2 1 9 9 N 1.36872 * 119.99822 * 0.27470 * 7 2 1 10 10 C 1.38971 * 120.00088 * 179.72351 * 9 7 2 11 11 C 1.39397 * 120.65472 * 359.71766 * 10 9 7 12 12 C 1.37898 * 118.71633 * 179.67525 * 11 10 9 13 13 N 1.31656 * 120.71452 * 0.61874 * 12 11 10 14 14 C 1.32817 * 122.62892 * 359.79783 * 13 12 11 15 15 C 1.37327 * 120.14558 * 359.77273 * 14 13 12 16 16 C 1.50485 * 122.90992 * 180.45480 * 15 14 13 17 17 C 1.52766 * 110.56943 * 342.51478 * 16 15 14 18 18 C 1.53326 * 108.34354 * 50.76136 * 17 16 15 19 19 C 1.50741 * 117.52098 * 179.59803 * 14 13 12 20 20 H 0.97005 * 119.99679 * 359.97438 * 1 2 3 21 21 H 0.97000 * 119.99755 * 359.72586 * 9 7 2 22 22 H 1.07999 * 120.64179 * 359.92373 * 11 10 9 23 23 H 1.08001 * 119.64018 * 180.34998 * 12 11 10 24 24 H 1.08995 * 109.25701 * 102.79750 * 16 15 14 25 25 H 1.08998 * 109.25522 * 222.23262 * 16 15 14 26 26 H 1.09006 * 109.68768 * 170.47372 * 17 16 15 27 27 H 1.08999 * 109.69323 * 291.04885 * 17 16 15 28 28 H 1.09002 * 109.66980 * 49.95750 * 18 17 16 29 29 H 1.08998 * 109.67409 * 170.48575 * 18 17 16 30 30 H 1.08998 * 109.25024 * 41.97963 * 19 14 13 31 31 H 1.09000 * 109.22639 * 282.53167 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0097 -1.2024 -0.0005 8 1 3.0897 -1.2024 -0.0010 9 7 1.3253 -2.3877 -0.0068 10 6 2.0200 -3.5913 -0.0131 11 6 3.4139 -3.6073 -0.0191 12 6 4.0625 -4.8242 -0.0185 13 7 3.3800 -5.9500 -0.0245 14 6 2.0522 -5.9825 -0.0275 15 6 1.3337 -4.8122 -0.0196 16 6 -0.1707 -4.7765 -0.0124 17 6 -0.7417 -6.1259 -0.4446 18 6 -0.0712 -7.2234 0.3902 19 6 1.3887 -7.3359 -0.0437 20 1 -0.4850 0.8401 0.0004 21 1 0.3553 -2.3876 -0.0068 22 1 3.9750 -2.6845 -0.0202 23 1 5.1421 -4.8540 -0.0173 24 1 -0.5199 -4.5440 0.9936 25 1 -0.5152 -4.0037 -0.6994 26 1 -1.8182 -6.1408 -0.2740 27 1 -0.5346 -6.2907 -1.5020 28 1 -0.1207 -6.9621 1.4473 29 1 -0.5782 -8.1735 0.2224 30 1 1.9160 -8.0029 0.6383 31 1 1.4332 -7.7454 -1.0529 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260498069.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:59 Heat of formation + Delta-G solvation = -4.128667 kcal Electronic energy + Delta-G solvation = -14412.469612 eV Core-core repulsion = 12077.685949 eV Total energy + Delta-G solvation = -2334.783663 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.23457 -37.72647 -37.04006 -34.32837 -31.81210 -31.11013 -29.79036 -26.81188 -24.82223 -23.85662 -22.29254 -20.66889 -19.76513 -18.16815 -17.11050 -16.40138 -16.28160 -15.51082 -15.17820 -14.78404 -14.74157 -14.60502 -14.17144 -13.52166 -13.41294 -13.28925 -12.93991 -12.62368 -12.39548 -12.18128 -12.14617 -11.63011 -11.51395 -11.20814 -10.79891 -9.97130 -9.42562 -8.88166 -8.54741 -5.83458 0.60088 0.89815 1.38988 1.49082 1.49882 2.23289 2.90913 3.32027 3.35917 3.65303 3.95863 4.08131 4.14030 4.36223 4.40512 4.60808 4.71730 4.75480 4.95357 4.99937 5.03978 5.07388 5.17160 5.21933 5.28847 5.40041 5.48006 5.51038 5.74495 5.80791 6.24944 6.74572 7.38444 7.53481 7.57194 8.63044 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.040034 B = 0.008413 C = 0.007037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.229641 B = 3327.458200 C = 3978.009574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.025 4.025 3 Si 1.000 3.000 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.328 4.328 8 H 0.104 0.896 9 N -0.566 5.566 10 C 0.208 3.792 11 C -0.301 4.301 12 C 0.136 3.864 13 N -0.586 5.586 14 C 0.155 3.845 15 C -0.252 4.252 16 C -0.059 4.059 17 C -0.109 4.109 18 C -0.109 4.109 19 C -0.059 4.059 20 H 0.277 0.723 21 H 0.395 0.605 22 H 0.118 0.882 23 H 0.166 0.834 24 H 0.055 0.945 25 H 0.043 0.957 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.078 -8.777 -0.083 8.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.224 4.224 3 Si 0.823 3.177 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.458 4.458 8 H 0.121 0.879 9 N -0.172 5.172 10 C 0.082 3.918 11 C -0.329 4.329 12 C -0.020 4.020 13 N -0.303 5.303 14 C 0.022 3.978 15 C -0.262 4.262 16 C -0.097 4.097 17 C -0.147 4.147 18 C -0.147 4.147 19 C -0.097 4.097 20 H 0.087 0.913 21 H 0.230 0.770 22 H 0.136 0.864 23 H 0.183 0.817 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.118 0.882 30 H 0.103 0.897 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.253 -9.118 -0.084 9.122 hybrid contribution -0.417 2.220 0.003 2.259 sum -0.164 -6.898 -0.082 6.901 Atomic orbital electron populations 1.69764 1.07356 1.29487 1.49897 1.26209 0.96567 1.02987 0.96678 0.84864 0.77594 0.75941 0.79324 1.19073 1.20313 1.19063 1.20015 0.93454 0.83492 1.48838 0.87857 1.40991 1.07960 1.02235 1.66023 1.18500 0.92518 0.86529 0.94266 1.21421 0.93026 0.99818 1.18627 1.22419 1.00098 0.86930 0.92528 1.67547 1.08554 1.30525 1.23683 1.21046 0.89303 0.94721 0.92713 1.19868 0.96828 0.91735 1.17720 1.20049 0.90429 0.99065 1.00168 1.21505 1.00245 0.92893 1.00018 1.21529 0.93890 0.99701 0.99558 1.20344 0.95447 0.90950 1.02957 0.91341 0.76982 0.86433 0.81707 0.92686 0.93833 0.89741 0.91792 0.92250 0.88233 0.89743 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.48 13.05 21.65 0.28 -50.20 16 2 C -0.02 -1.28 5.50 84.88 0.47 -0.82 16 3 Si 1.00 40.93 29.55 68.60 2.03 42.96 16 4 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 7 C -0.33 -17.44 9.57 84.05 0.80 -16.64 16 8 H 0.10 5.28 5.75 -2.91 -0.02 5.26 16 9 N -0.57 -29.28 5.32 -183.49 -0.98 -30.26 16 10 C 0.21 9.90 6.62 38.73 0.26 10.16 16 11 C -0.30 -13.47 9.37 22.47 0.21 -13.26 16 12 C 0.14 5.42 11.18 84.64 0.95 6.37 16 13 N -0.59 -23.72 10.18 -184.29 -1.88 -25.60 16 14 C 0.15 5.99 6.62 42.21 0.28 6.27 16 15 C -0.25 -10.61 5.76 -19.70 -0.11 -10.72 16 16 C -0.06 -2.15 4.92 29.70 0.15 -2.00 16 17 C -0.11 -2.94 5.99 30.63 0.18 -2.75 16 18 C -0.11 -2.60 5.97 30.61 0.18 -2.42 16 19 C -0.06 -1.69 5.91 29.77 0.18 -1.51 16 20 H 0.28 14.23 8.31 -92.70 -0.77 13.45 16 21 H 0.39 20.76 6.06 -92.71 -0.56 20.20 16 22 H 0.12 5.22 6.07 -2.91 -0.02 5.20 16 23 H 0.17 5.30 8.06 -2.91 -0.02 5.28 16 24 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.04 1.72 7.09 -2.39 -0.02 1.70 16 26 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 27 H 0.06 1.70 8.10 -2.39 -0.02 1.68 16 28 H 0.06 1.49 8.10 -2.39 -0.02 1.47 16 29 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -59.81 255.08 3.57 -56.23 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: 0.58 Total: 34.21 kcal Atomic # 6 Polarization: -30.88 SS G_CDS: 3.54 Total: -27.34 kcal Atomic # 7 Polarization: -103.49 SS G_CDS: -2.57 Total: -106.06 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -59.81 3.57 -56.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260498069.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.106 kcal (2) G-P(sol) polarization free energy of solvation -59.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds