Wall clock time and date at job start Mon Mar 30 2020 03:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38169 * 119.56977 * 2 1 4 4 C 1.38840 * 119.33857 * 179.97438 * 3 2 1 5 5 C 1.38349 * 118.50860 * 359.74456 * 4 3 2 6 6 C 1.39187 * 119.08904 * 0.47943 * 5 4 3 7 7 N 1.38838 * 119.71034 * 179.79055 * 6 5 4 8 8 C 1.36917 * 119.99841 * 184.72790 * 7 6 5 9 9 H 1.07998 * 119.99235 * 220.40131 * 8 7 6 10 10 C 1.38810 * 120.00494 * 40.39943 * 8 7 6 11 11 N 1.31569 * 119.99754 * 18.54027 * 10 8 7 12 12 Si 1.86797 * 120.00315 * 198.54081 * 10 8 7 13 13 H 1.48505 * 109.46868 * 89.99881 * 12 10 8 14 14 H 1.48493 * 109.47221 * 209.99967 * 12 10 8 15 15 H 1.48498 * 109.46845 * 330.00189 * 12 10 8 16 16 C 1.46500 * 120.00099 * 4.72237 * 7 6 5 17 17 C 1.52999 * 117.51986 * 176.75331 * 16 7 6 18 18 C 1.53000 * 60.00190 * 107.47987 * 17 16 7 19 19 N 1.31869 * 119.56923 * 179.97438 * 2 1 3 20 20 H 1.08996 * 109.47423 * 270.02193 * 1 2 3 21 21 H 1.09008 * 109.47319 * 30.02418 * 1 2 3 22 22 H 1.09002 * 109.46866 * 150.01978 * 1 2 3 23 23 H 1.08001 * 120.33220 * 359.97438 * 3 2 1 24 24 H 1.08005 * 120.74830 * 180.02562 * 4 3 2 25 25 H 1.08003 * 120.45758 * 180.26495 * 5 4 3 26 26 H 0.96999 * 120.00233 * 175.00488 * 11 10 8 27 27 H 1.08997 * 115.55274 * 31.04835 * 16 7 6 28 28 H 1.08996 * 117.49810 * 214.97127 * 17 16 7 29 29 H 1.09007 * 117.49867 * 359.97438 * 17 16 7 30 30 H 1.09002 * 117.50047 * 252.51005 * 18 17 16 31 31 H 1.09005 * 117.49681 * 107.48932 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1888 1.2017 0.0000 4 6 3.5771 1.1961 0.0005 5 6 4.2326 -0.0223 0.0065 6 6 3.4820 -1.1944 0.0015 7 7 4.1265 -2.4242 0.0030 8 6 3.3980 -3.5789 -0.0996 9 1 3.6643 -4.4399 0.4956 10 6 2.3173 -3.6430 -0.9684 11 7 2.2027 -2.7650 -1.9416 12 14 1.0259 -4.9758 -0.7560 13 1 -0.0469 -4.4861 0.1467 14 1 0.4429 -5.3155 -2.0788 15 1 1.6549 -6.1851 -0.1669 16 6 5.5859 -2.4862 0.1141 17 6 6.2311 -3.8716 0.1866 18 6 6.3633 -3.0318 -1.0855 19 7 2.1577 -1.1469 0.0005 20 1 -0.3634 0.0004 1.0276 21 1 -0.3634 0.8898 -0.5142 22 1 -0.3633 -0.8902 -0.5135 23 1 1.6472 2.1361 -0.0004 24 1 4.1331 2.1221 0.0010 25 1 5.3118 -0.0633 0.0114 26 1 1.4884 -2.8524 -2.5920 27 1 6.0480 -1.6851 0.6910 28 1 7.1176 -3.9819 0.8112 29 1 5.5697 -4.7373 0.1520 30 1 5.7887 -3.3450 -1.9572 31 1 7.3367 -2.5896 -1.2977 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260505618.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:11 Heat of formation + Delta-G solvation = 67.852457 kcal Electronic energy + Delta-G solvation = -14812.380990 eV Core-core repulsion = 12480.718662 eV Total energy + Delta-G solvation = -2331.662327 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.72750 -38.69301 -35.49126 -33.78048 -32.77960 -31.16464 -28.30376 -26.35049 -23.74829 -23.11102 -22.83499 -21.28373 -19.20495 -17.70623 -17.05751 -16.41016 -16.30802 -15.55723 -15.40830 -14.95853 -14.27706 -13.92487 -13.80029 -13.42968 -12.98467 -12.85126 -12.76203 -12.71965 -12.25138 -12.19624 -12.04288 -11.67075 -11.17608 -10.72276 -10.40577 -9.85723 -9.42120 -8.36431 -7.91646 -5.75233 0.85915 1.12856 1.39999 1.47108 1.49677 2.33509 2.91388 3.10222 3.24433 3.67364 4.03085 4.13037 4.24246 4.28465 4.34530 4.61435 4.67279 4.80828 4.84999 4.89182 4.91358 5.01360 5.11477 5.27400 5.38674 5.44874 5.54564 5.70850 5.78869 6.15672 6.36531 6.98653 7.36227 7.84894 8.23229 8.93595 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.020266 B = 0.016875 C = 0.009930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.317785 B = 1658.865780 C = 2819.110045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.140 3.860 3 C -0.287 4.287 4 C -0.042 4.042 5 C -0.293 4.293 6 C 0.387 3.613 7 N -0.434 5.434 8 C -0.344 4.344 9 H 0.075 0.925 10 C 0.036 3.964 11 N -0.862 5.862 12 Si 0.965 3.035 13 H -0.283 1.283 14 H -0.286 1.286 15 H -0.264 1.264 16 C 0.061 3.939 17 C -0.162 4.162 18 C -0.189 4.189 19 N -0.525 5.525 20 H 0.080 0.920 21 H 0.091 0.909 22 H 0.044 0.956 23 H 0.139 0.861 24 H 0.149 0.851 25 H 0.125 0.875 26 H 0.256 0.744 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.165 4.212 3.318 6.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.003 4.003 3 C -0.312 4.312 4 C -0.067 4.067 5 C -0.319 4.319 6 C 0.150 3.850 7 N -0.129 5.129 8 C -0.472 4.472 9 H 0.093 0.907 10 C -0.171 4.171 11 N -0.496 5.496 12 Si 0.791 3.209 13 H -0.210 1.210 14 H -0.212 1.212 15 H -0.188 1.188 16 C -0.045 4.045 17 C -0.200 4.200 18 C -0.228 4.228 19 N -0.243 5.243 20 H 0.098 0.902 21 H 0.110 0.890 22 H 0.063 0.937 23 H 0.157 0.843 24 H 0.167 0.833 25 H 0.143 0.857 26 H 0.065 0.935 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.712 3.249 3.193 5.302 hybrid contribution -0.348 -0.058 -0.389 0.525 sum 2.363 3.191 2.804 4.862 Atomic orbital electron populations 1.20597 0.89065 1.02311 1.02588 1.21455 0.97282 0.88605 0.92967 1.21514 0.95074 0.98275 1.16296 1.21327 0.94418 0.97137 0.93865 1.21363 1.00093 0.92603 1.17834 1.18563 0.88500 0.86216 0.91720 1.41715 1.02078 1.02212 1.66849 1.19113 1.12426 0.92339 1.23322 0.90746 1.25759 0.99810 0.98155 0.93362 1.70010 1.31175 1.36289 1.12139 0.85387 0.79523 0.78864 0.77104 1.20963 1.21226 1.18815 1.21875 0.81222 0.98855 1.02512 1.23161 1.02210 0.94051 1.00554 1.23197 1.01576 1.05511 0.92550 1.67092 1.08967 1.29115 1.19144 0.90176 0.89003 0.93725 0.84338 0.83340 0.85675 0.93452 0.85561 0.85607 0.89929 0.92156 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.26 10.17 71.23 0.72 -2.54 16 2 C 0.14 6.40 6.78 42.53 0.29 6.68 16 3 C -0.29 -11.29 9.74 22.40 0.22 -11.08 16 4 C -0.04 -1.62 10.17 22.44 0.23 -1.39 16 5 C -0.29 -12.97 9.28 22.52 0.21 -12.76 16 6 C 0.39 20.28 6.53 133.10 0.87 21.15 16 7 N -0.43 -22.51 2.96 -495.49 -1.46 -23.97 16 8 C -0.34 -19.01 8.24 84.04 0.69 -18.32 16 9 H 0.07 4.03 6.79 -2.91 -0.02 4.01 16 10 C 0.04 2.00 4.28 84.87 0.36 2.36 16 11 N -0.86 -50.97 11.42 21.65 0.25 -50.72 16 12 Si 0.97 45.21 29.60 68.60 2.03 47.24 16 13 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 14 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 15 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 16 C 0.06 2.51 5.67 44.99 0.26 2.76 16 17 C -0.16 -5.72 9.80 30.59 0.30 -5.42 16 18 C -0.19 -7.07 10.36 30.60 0.32 -6.75 16 19 N -0.52 -28.25 6.99 -181.31 -1.27 -29.52 16 20 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 21 H 0.09 2.74 8.08 -2.38 -0.02 2.72 16 22 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 24 H 0.15 4.36 8.06 -2.91 -0.02 4.34 16 25 H 0.13 4.91 6.34 -2.91 -0.02 4.89 16 26 H 0.26 14.72 8.32 -92.71 -0.77 13.95 16 27 H 0.13 4.53 6.82 -2.39 -0.02 4.51 16 28 H 0.13 3.37 8.14 -2.39 -0.02 3.35 16 29 H 0.08 3.29 6.49 -2.38 -0.02 3.28 16 30 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.12 3.48 8.14 -2.38 -0.02 3.46 16 Total: -1.00 -67.58 262.96 5.13 -62.45 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 1.12 Total: 19.82 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: 4.47 Total: -25.30 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -2.49 Total: -104.21 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -67.58 5.13 -62.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260505618.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.303 kcal (2) G-P(sol) polarization free energy of solvation -67.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds