Wall clock time and date at job start Mon Mar 30 2020 02:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35032 * 1 3 3 C 1.40076 * 119.99851 * 2 1 4 4 H 1.08000 * 119.99886 * 153.49637 * 3 2 1 5 5 C 1.40310 * 119.99867 * 333.49587 * 3 2 1 6 6 N 1.30688 * 120.00233 * 339.73631 * 5 3 2 7 7 Si 1.86798 * 119.99948 * 159.73270 * 5 3 2 8 8 H 1.48507 * 109.47051 * 84.99716 * 7 5 3 9 9 H 1.48496 * 109.47358 * 204.99653 * 7 5 3 10 10 H 1.48504 * 109.47213 * 324.99821 * 7 5 3 11 11 C 1.50705 * 120.00418 * 179.97438 * 2 1 3 12 12 C 1.50699 * 109.46882 * 94.99841 * 11 2 1 13 13 C 1.38288 * 119.96743 * 270.02081 * 12 11 2 14 14 C 1.38251 * 120.10561 * 180.02562 * 13 12 11 15 15 C 1.38165 * 120.05859 * 359.67986 * 14 13 12 16 16 C 1.38713 * 119.94016 * 0.57539 * 15 14 13 17 17 O 1.35897 * 120.05461 * 179.72310 * 16 15 14 18 18 C 1.42898 * 117.00075 * 359.72258 * 17 16 15 19 19 C 1.38119 * 119.97082 * 90.00377 * 12 11 2 20 20 H 1.07999 * 120.00264 * 354.16855 * 1 2 3 21 21 H 1.07999 * 119.99662 * 174.17706 * 1 2 3 22 22 H 0.96995 * 119.99905 * 180.02562 * 6 5 3 23 23 H 1.08997 * 109.46648 * 334.99710 * 11 2 1 24 24 H 1.08999 * 109.47034 * 214.99780 * 11 2 1 25 25 H 1.08000 * 119.94915 * 0.02562 * 13 12 11 26 26 H 1.08008 * 119.96912 * 179.97438 * 14 13 12 27 27 H 1.07991 * 120.02767 * 180.29539 * 15 14 13 28 28 H 1.09000 * 109.47288 * 299.99992 * 18 17 16 29 29 H 1.08997 * 109.47347 * 59.99963 * 18 17 16 30 30 H 1.08998 * 109.47640 * 180.02562 * 18 17 16 31 31 H 1.07995 * 120.02800 * 0.02562 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2131 0.0000 4 1 3.0455 1.2623 0.4174 5 6 1.4597 2.3643 -0.5423 6 7 0.4648 2.2543 -1.3825 7 14 2.0948 4.0544 -0.0631 8 1 3.2486 4.4127 -0.9267 9 1 1.0143 5.0576 -0.2394 10 1 2.5267 4.0365 1.3576 11 6 2.1039 -1.3051 0.0006 12 6 2.4623 -1.6788 -1.4147 13 6 1.5929 -2.4466 -2.1676 14 6 1.9190 -2.7915 -3.4661 15 6 3.1119 -2.3641 -4.0168 16 6 3.9880 -1.5984 -3.2618 17 8 5.1645 -1.1815 -3.7993 18 6 5.4376 -1.5737 -5.1460 19 6 3.6586 -1.2538 -1.9586 20 1 -0.5400 0.9304 0.0950 21 1 -0.5399 -0.9305 -0.0949 22 1 0.0565 3.0501 -1.7576 23 1 1.4790 -2.0852 0.4353 24 1 3.0146 -1.1985 0.5899 25 1 0.6576 -2.7773 -1.7407 26 1 1.2385 -3.3916 -4.0521 27 1 3.3640 -2.6299 -5.0327 28 1 5.4550 -2.6616 -5.2112 29 1 4.6606 -1.1828 -5.8029 30 1 6.4056 -1.1764 -5.4511 31 1 4.3373 -0.6544 -1.3701 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260567888.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:00 Heat of formation + Delta-G solvation = -6.210472 kcal Electronic energy + Delta-G solvation = -14171.748083 eV Core-core repulsion = 11804.581395 eV Total energy + Delta-G solvation = -2367.166688 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.61651 -37.27002 -34.79454 -32.22041 -30.20495 -29.33322 -27.03719 -25.46203 -24.68420 -21.96602 -20.70407 -18.86804 -17.25587 -15.79903 -15.51354 -15.40683 -15.36686 -14.80410 -13.72609 -13.41710 -13.10063 -12.71514 -12.39127 -11.98900 -11.69623 -11.63741 -11.06062 -10.94331 -10.83421 -10.60884 -10.43562 -10.09118 -9.75672 -9.32760 -8.78691 -8.06627 -7.62766 -7.19421 -6.38383 -3.99271 1.97561 2.06537 3.14932 3.25085 3.30318 3.63175 4.13513 4.24092 4.44415 5.15376 5.28918 5.32109 5.40178 5.46878 5.58509 5.80379 5.96689 6.09358 6.19254 6.42989 6.69026 6.76389 6.82981 6.95806 7.01356 7.33402 7.43639 7.45461 7.67217 7.89314 8.27152 8.49472 9.05449 9.31706 9.52070 10.62996 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.027009 B = 0.009272 C = 0.007749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.441163 B = 3019.185298 C = 3612.412541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.343 4.343 2 C 0.040 3.960 3 C -0.477 4.477 4 H 0.061 0.939 5 C 0.082 3.918 6 N -0.798 5.798 7 Si 0.888 3.112 8 H -0.274 1.274 9 H -0.281 1.281 10 H -0.265 1.265 11 C -0.048 4.048 12 C 0.000 4.000 13 C -0.150 4.150 14 C -0.087 4.087 15 C -0.227 4.227 16 C 0.119 3.881 17 O -0.321 6.321 18 C 0.031 3.969 19 C -0.136 4.136 20 H 0.083 0.917 21 H 0.041 0.959 22 H 0.270 0.730 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.118 0.882 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.093 0.907 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.050 -7.109 -5.593 10.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.384 4.384 2 C 0.039 3.961 3 C -0.508 4.508 4 H 0.079 0.921 5 C -0.133 4.133 6 N -0.425 5.425 7 Si 0.713 3.287 8 H -0.199 1.199 9 H -0.206 1.206 10 H -0.189 1.189 11 C -0.085 4.085 12 C 0.000 4.000 13 C -0.168 4.168 14 C -0.105 4.105 15 C -0.246 4.246 16 C 0.075 3.925 17 O -0.235 6.235 18 C -0.065 4.065 19 C -0.155 4.155 20 H 0.101 0.899 21 H 0.059 0.941 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.136 0.864 26 H 0.134 0.866 27 H 0.135 0.865 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.111 0.889 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.061 -6.870 -5.662 10.770 hybrid contribution 0.066 0.880 -0.352 0.950 sum 6.127 -5.990 -6.014 10.468 Atomic orbital electron populations 1.23188 0.94410 0.97270 1.23499 1.18191 0.93014 0.90030 0.94894 1.18997 1.01662 0.93335 1.36829 0.92089 1.25691 0.94418 1.00297 0.92930 1.69829 1.20980 1.30403 1.21304 0.86679 0.79020 0.82804 0.80149 1.19928 1.20638 1.18894 1.19825 0.99872 0.98078 0.90775 1.19728 0.91520 0.91935 0.96792 1.20913 0.99803 1.01476 0.94612 1.20761 0.95590 0.98957 0.95169 1.20974 0.97341 1.06086 1.00153 1.18979 0.85240 0.95121 0.93210 1.86051 1.35889 1.72634 1.28900 1.22936 1.01668 0.99887 0.81969 1.20274 0.98714 1.03451 0.93062 0.89892 0.94072 0.91918 0.92412 0.91970 0.86412 0.86646 0.86501 0.93157 0.92983 0.88854 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.34 -9.51 12.92 29.59 0.38 -9.13 16 2 C 0.04 1.08 4.90 -105.07 -0.51 0.56 16 3 C -0.48 -13.36 9.01 -38.11 -0.34 -13.70 16 4 H 0.06 1.65 7.93 -52.49 -0.42 1.23 16 5 C 0.08 2.27 5.00 -17.26 -0.09 2.18 16 6 N -0.80 -22.88 11.33 55.57 0.63 -22.25 16 7 Si 0.89 20.49 29.61 -169.99 -5.03 15.46 16 8 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.26 -6.01 7.11 56.52 0.40 -5.61 16 11 C -0.05 -1.08 5.47 -29.03 -0.16 -1.24 16 12 C 0.00 0.01 5.11 -104.65 -0.54 -0.53 16 13 C -0.15 -2.95 9.70 -39.56 -0.38 -3.33 16 14 C -0.09 -1.50 10.04 -39.60 -0.40 -1.90 16 15 C -0.23 -3.88 9.04 -39.43 -0.36 -4.24 16 16 C 0.12 2.27 6.69 -39.21 -0.26 2.01 16 17 O -0.32 -5.58 10.50 -19.42 -0.20 -5.78 16 18 C 0.03 0.37 9.81 101.05 0.99 1.36 16 19 C -0.14 -2.87 9.64 -39.43 -0.38 -3.25 16 20 H 0.08 2.47 6.49 -52.49 -0.34 2.13 16 21 H 0.04 1.06 8.06 -52.49 -0.42 0.64 16 22 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 23 H 0.06 1.18 7.98 -51.93 -0.41 0.77 16 24 H 0.06 1.30 8.06 -51.93 -0.42 0.88 16 25 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 26 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 27 H 0.12 1.63 6.30 -52.49 -0.33 1.30 16 28 H 0.05 0.52 7.67 -51.93 -0.40 0.13 16 29 H 0.05 0.60 7.65 -51.93 -0.40 0.20 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.13 2.67 8.06 -52.49 -0.42 2.25 16 LS Contribution 270.83 15.07 4.08 4.08 Total: -1.00 -30.78 270.83 -6.53 -37.31 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -3.96 Total: 2.39 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: -2.04 Total: -31.21 kcal Atomic # 7 Polarization: -22.88 SS G_CDS: 0.63 Total: -22.25 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.20 Total: -5.78 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.46 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.78 -6.53 -37.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260567888.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.102 kcal (2) G-P(sol) polarization free energy of solvation -30.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds