Wall clock time and date at job start Mon Mar 30 2020 02:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35032 * 1 3 3 C 1.40076 * 119.99851 * 2 1 4 4 H 1.08000 * 119.99886 * 153.49637 * 3 2 1 5 5 C 1.40310 * 119.99867 * 333.49587 * 3 2 1 6 6 N 1.30688 * 120.00233 * 339.73631 * 5 3 2 7 7 Si 1.86798 * 119.99948 * 159.73270 * 5 3 2 8 8 H 1.48507 * 109.47051 * 84.99716 * 7 5 3 9 9 H 1.48496 * 109.47358 * 204.99653 * 7 5 3 10 10 H 1.48504 * 109.47213 * 324.99821 * 7 5 3 11 11 C 1.50705 * 120.00418 * 179.97438 * 2 1 3 12 12 C 1.50699 * 109.46882 * 94.99841 * 11 2 1 13 13 C 1.38288 * 119.96743 * 270.02081 * 12 11 2 14 14 C 1.38251 * 120.10561 * 180.02562 * 13 12 11 15 15 C 1.38165 * 120.05859 * 359.67986 * 14 13 12 16 16 C 1.38713 * 119.94016 * 0.57539 * 15 14 13 17 17 O 1.35897 * 120.05461 * 179.72310 * 16 15 14 18 18 C 1.42898 * 117.00075 * 359.72258 * 17 16 15 19 19 C 1.38119 * 119.97082 * 90.00377 * 12 11 2 20 20 H 1.07999 * 120.00264 * 354.16855 * 1 2 3 21 21 H 1.07999 * 119.99662 * 174.17706 * 1 2 3 22 22 H 0.96995 * 119.99905 * 180.02562 * 6 5 3 23 23 H 1.08997 * 109.46648 * 334.99710 * 11 2 1 24 24 H 1.08999 * 109.47034 * 214.99780 * 11 2 1 25 25 H 1.08000 * 119.94915 * 0.02562 * 13 12 11 26 26 H 1.08008 * 119.96912 * 179.97438 * 14 13 12 27 27 H 1.07991 * 120.02767 * 180.29539 * 15 14 13 28 28 H 1.09000 * 109.47288 * 299.99992 * 18 17 16 29 29 H 1.08997 * 109.47347 * 59.99963 * 18 17 16 30 30 H 1.08998 * 109.47640 * 180.02562 * 18 17 16 31 31 H 1.07995 * 120.02800 * 0.02562 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2131 0.0000 4 1 3.0455 1.2623 0.4174 5 6 1.4597 2.3643 -0.5423 6 7 0.4648 2.2543 -1.3825 7 14 2.0948 4.0544 -0.0631 8 1 3.2486 4.4127 -0.9267 9 1 1.0143 5.0576 -0.2394 10 1 2.5267 4.0365 1.3576 11 6 2.1039 -1.3051 0.0006 12 6 2.4623 -1.6788 -1.4147 13 6 1.5929 -2.4466 -2.1676 14 6 1.9190 -2.7915 -3.4661 15 6 3.1119 -2.3641 -4.0168 16 6 3.9880 -1.5984 -3.2618 17 8 5.1645 -1.1815 -3.7993 18 6 5.4376 -1.5737 -5.1460 19 6 3.6586 -1.2538 -1.9586 20 1 -0.5400 0.9304 0.0950 21 1 -0.5399 -0.9305 -0.0949 22 1 0.0565 3.0501 -1.7576 23 1 1.4790 -2.0852 0.4353 24 1 3.0146 -1.1985 0.5899 25 1 0.6576 -2.7773 -1.7407 26 1 1.2385 -3.3916 -4.0521 27 1 3.3640 -2.6299 -5.0327 28 1 5.4550 -2.6616 -5.2112 29 1 4.6606 -1.1828 -5.8029 30 1 6.4056 -1.1764 -5.4511 31 1 4.3373 -0.6544 -1.3701 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260567888.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:59 Heat of formation + Delta-G solvation = -23.678159 kcal Electronic energy + Delta-G solvation = -14172.505539 eV Core-core repulsion = 11804.581395 eV Total energy + Delta-G solvation = -2367.924144 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.98943 -38.71522 -36.73102 -34.08922 -31.75425 -30.94960 -28.17151 -27.34879 -26.62682 -23.42355 -22.22165 -20.85372 -18.65833 -17.65980 -17.07915 -16.84730 -16.75048 -16.55928 -15.23899 -15.05229 -14.68819 -14.25775 -14.16633 -13.57961 -13.45233 -12.90645 -12.76666 -12.52770 -12.49540 -12.21911 -12.00335 -11.69897 -11.59748 -11.36465 -10.87170 -9.62905 -9.31291 -9.04388 -8.48542 -6.18890 0.49671 0.59743 1.30219 1.36952 1.49263 2.08933 2.28506 2.44781 2.91371 3.35229 3.96432 4.06357 4.27128 4.37434 4.42320 4.48765 4.55903 4.66433 4.73187 4.86831 4.96643 5.06019 5.23181 5.31582 5.41463 5.51141 5.56781 5.84428 5.94648 6.08236 6.29676 6.56043 6.90796 7.17280 7.42012 8.54223 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.027009 B = 0.009272 C = 0.007749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.441163 B = 3019.185298 C = 3612.412541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.367 4.367 2 C 0.037 3.963 3 C -0.507 4.507 4 H 0.062 0.938 5 C 0.035 3.965 6 N -0.830 5.830 7 Si 0.962 3.038 8 H -0.265 1.265 9 H -0.272 1.272 10 H -0.259 1.259 11 C -0.044 4.044 12 C -0.023 4.023 13 C -0.168 4.168 14 C -0.080 4.080 15 C -0.220 4.220 16 C 0.114 3.886 17 O -0.341 6.341 18 C 0.019 3.981 19 C -0.165 4.165 20 H 0.055 0.945 21 H 0.052 0.948 22 H 0.277 0.723 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.122 0.878 26 H 0.154 0.846 27 H 0.155 0.845 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.119 0.881 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.965 -7.373 -7.191 12.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.407 4.407 2 C 0.036 3.964 3 C -0.538 4.538 4 H 0.080 0.920 5 C -0.178 4.178 6 N -0.457 5.457 7 Si 0.784 3.216 8 H -0.190 1.190 9 H -0.196 1.196 10 H -0.183 1.183 11 C -0.081 4.081 12 C -0.023 4.023 13 C -0.187 4.187 14 C -0.098 4.098 15 C -0.238 4.238 16 C 0.069 3.931 17 O -0.256 6.256 18 C -0.075 4.075 19 C -0.184 4.184 20 H 0.073 0.927 21 H 0.070 0.930 22 H 0.087 0.913 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.140 0.860 26 H 0.171 0.829 27 H 0.173 0.827 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.137 0.863 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.981 -7.149 -7.264 12.353 hybrid contribution -0.147 0.922 0.030 0.934 sum 6.834 -6.227 -7.234 11.739 Atomic orbital electron populations 1.23019 0.94877 0.96429 1.26397 1.18590 0.93130 0.91947 0.92766 1.19353 1.02075 0.94687 1.37725 0.92006 1.26611 0.94496 1.04368 0.92307 1.69912 1.22052 1.31930 1.21848 0.85545 0.78702 0.77411 0.79977 1.19035 1.19619 1.18252 1.19728 0.99726 0.96297 0.92370 1.19682 0.92552 0.93675 0.96404 1.21115 0.99817 1.01859 0.95864 1.21198 0.96121 0.98169 0.94318 1.21401 0.96460 1.04426 1.01526 1.19081 0.86231 0.95018 0.92753 1.86027 1.35044 1.72877 1.31619 1.23336 1.03284 1.01523 0.79393 1.20303 0.98898 1.04604 0.94556 0.92690 0.92975 0.91318 0.91051 0.91473 0.85976 0.82877 0.82722 0.91140 0.92235 0.86277 0.86949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.37 -20.98 12.92 67.08 0.87 -20.11 16 2 C 0.04 2.05 4.90 -20.15 -0.10 1.95 16 3 C -0.51 -29.04 9.01 23.22 0.21 -28.83 16 4 H 0.06 3.42 7.93 -2.91 -0.02 3.39 16 5 C 0.04 1.97 5.00 85.37 0.43 2.40 16 6 N -0.83 -48.32 11.33 21.89 0.25 -48.07 16 7 Si 0.96 42.22 29.61 68.60 2.03 44.25 16 8 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 9 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 10 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 11 C -0.04 -2.01 5.47 29.10 0.16 -1.85 16 12 C -0.02 -1.00 5.11 -19.88 -0.10 -1.10 16 13 C -0.17 -6.49 9.70 22.28 0.22 -6.28 16 14 C -0.08 -2.57 10.04 22.26 0.22 -2.35 16 15 C -0.22 -6.87 9.04 22.37 0.20 -6.66 16 16 C 0.11 4.22 6.69 22.51 0.15 4.37 16 17 O -0.34 -11.32 10.50 -92.39 -0.97 -12.29 16 18 C 0.02 0.39 9.81 113.37 1.11 1.50 16 19 C -0.16 -7.04 9.64 22.37 0.22 -6.83 16 20 H 0.05 3.40 6.49 -2.91 -0.02 3.38 16 21 H 0.05 2.77 8.06 -2.91 -0.02 2.75 16 22 H 0.28 14.79 8.29 -92.71 -0.77 14.02 16 23 H 0.07 2.96 7.98 -2.39 -0.02 2.95 16 24 H 0.07 2.90 8.06 -2.39 -0.02 2.88 16 25 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 26 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 27 H 0.16 3.59 6.30 -2.92 -0.02 3.57 16 28 H 0.07 1.19 7.67 -2.39 -0.02 1.17 16 29 H 0.06 1.16 7.65 -2.39 -0.02 1.14 16 30 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -67.34 270.83 5.99 -61.34 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 1.10 Total: 18.55 kcal Atomic # 6 Polarization: -67.36 SS G_CDS: 3.58 Total: -63.77 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.25 Total: -48.07 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -0.97 Total: -12.29 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -67.34 5.99 -61.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260567888.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.665 kcal (2) G-P(sol) polarization free energy of solvation -67.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds