Wall clock time and date at job start Mon Mar 30 2020 02:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99914 * 2 1 4 4 H 1.48501 * 109.47185 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47469 * 299.99935 * 3 2 1 6 6 H 1.48502 * 109.47102 * 60.00265 * 3 2 1 7 7 C 1.37882 * 120.00447 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00313 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99541 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.37120 * 7.25063 * 9 7 2 11 11 C 1.54252 * 110.32283 * 129.43395 * 9 7 2 12 12 C 1.54385 * 105.06230 * 118.89556 * 11 9 7 13 13 N 1.48565 * 104.59136 * 336.14596 * 12 11 9 14 14 C 1.48558 * 104.22189 * 39.48296 * 13 12 11 15 15 H 1.08997 * 110.41596 * 79.41487 * 14 13 12 16 16 C 1.50698 * 110.41040 * 201.74002 * 14 13 12 17 17 C 1.38684 * 120.41849 * 213.56460 * 16 14 13 18 18 C 1.38627 * 118.42013 * 180.02562 * 17 16 14 19 19 C 1.38226 * 119.16419 * 0.02562 * 18 17 16 20 20 N 1.31862 * 120.76239 * 0.25572 * 19 18 17 21 21 C 1.31888 * 121.72146 * 359.47180 * 20 19 18 22 22 H 0.96995 * 120.00189 * 359.97438 * 1 2 3 23 23 H 1.08992 * 110.32809 * 359.97438 * 11 9 7 24 24 H 1.09001 * 110.32690 * 237.78648 * 11 9 7 25 25 H 1.08997 * 110.41366 * 217.37130 * 12 11 9 26 26 H 1.08996 * 110.51329 * 94.97214 * 12 11 9 27 27 H 1.00894 * 111.00051 * 159.04348 * 13 12 11 28 28 H 1.08001 * 120.78797 * 0.02562 * 17 16 14 29 29 H 1.07998 * 120.41747 * 179.97438 * 18 17 16 30 30 H 1.07993 * 119.62000 * 179.97438 * 19 18 17 31 31 H 1.08005 * 119.61530 * 180.27314 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.1836 -2.3209 -0.1310 11 6 1.7794 -3.4218 -1.1193 12 6 2.3140 -4.6721 -0.3883 13 7 2.6237 -4.1985 0.9854 14 6 1.5110 -3.2695 1.3107 15 1 0.6236 -3.8283 1.6077 16 6 1.9229 -2.3190 2.4052 17 6 0.9941 -1.8711 3.3326 18 6 1.4180 -0.9971 4.3216 19 6 2.7427 -0.6034 4.3502 20 7 3.5972 -1.0455 3.4484 21 6 3.2304 -1.8816 2.4967 22 1 -0.4850 0.8400 0.0004 23 1 2.5833 -2.9306 -1.6674 24 1 0.9712 -3.6964 -1.7972 25 1 3.2165 -5.0406 -0.8757 26 1 1.5531 -5.4519 -0.3590 27 1 2.6528 -4.9695 1.6357 28 1 -0.0350 -2.1955 3.2853 29 1 0.7217 -0.6277 5.0600 30 1 3.0807 0.0775 5.1171 31 1 3.9598 -2.2255 1.7781 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260569278.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:30 Heat of formation + Delta-G solvation = 16.844281 kcal Electronic energy + Delta-G solvation = -14958.402076 eV Core-core repulsion = 12624.527869 eV Total energy + Delta-G solvation = -2333.874208 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.01567 -38.95875 -34.70290 -33.44177 -32.28469 -31.07306 -28.70767 -26.51298 -24.18879 -23.82131 -21.71293 -20.82609 -18.60090 -17.80953 -17.37161 -16.73620 -16.35622 -16.03883 -14.98694 -14.64122 -14.40024 -13.94137 -13.73543 -13.69926 -13.48174 -13.06646 -12.69786 -12.59196 -12.37372 -12.10485 -11.80483 -11.05842 -10.84936 -10.59869 -10.38547 -10.19412 -9.45175 -9.32427 -8.12872 -6.11587 0.55293 0.65236 1.29297 1.35143 1.44766 2.40376 3.13321 3.22069 3.47404 3.84445 4.16208 4.21052 4.26011 4.38439 4.41233 4.57010 4.64121 4.69756 4.88405 5.02747 5.12770 5.17901 5.28970 5.42536 5.58339 5.63422 5.69934 5.77619 6.04196 6.14012 6.46958 6.66976 6.98979 7.32815 7.50215 8.96531 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.019732 B = 0.017643 C = 0.011442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.683980 B = 1586.651670 C = 2446.452297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.029 3.971 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.289 1.289 7 C -0.477 4.477 8 H 0.045 0.955 9 C 0.031 3.969 10 H 0.039 0.961 11 C -0.120 4.120 12 C 0.048 3.952 13 N -0.661 5.661 14 C 0.112 3.888 15 H 0.040 0.960 16 C -0.067 4.067 17 C -0.094 4.094 18 C -0.178 4.178 19 C 0.060 3.940 20 N -0.522 5.522 21 C 0.128 3.872 22 H 0.257 0.743 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.086 0.914 26 H 0.049 0.951 27 H 0.337 0.663 28 H 0.129 0.871 29 H 0.154 0.846 30 H 0.172 0.828 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.373 -6.608 5.195 8.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.170 4.170 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.215 1.215 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.012 3.988 10 H 0.057 0.943 11 C -0.158 4.158 12 C -0.081 4.081 13 N -0.290 5.290 14 C 0.001 3.999 15 H 0.058 0.942 16 C -0.070 4.070 17 C -0.120 4.120 18 C -0.197 4.197 19 C -0.096 4.096 20 N -0.232 5.232 21 C -0.029 4.029 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.105 0.895 26 H 0.067 0.933 27 H 0.153 0.847 28 H 0.147 0.853 29 H 0.172 0.828 30 H 0.189 0.811 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.634 -5.702 5.047 8.058 hybrid contribution -1.463 0.408 -0.133 1.525 sum 1.171 -5.294 4.914 7.318 Atomic orbital electron populations 1.69960 1.06562 1.26544 1.53049 1.25345 0.95232 1.00932 0.95458 0.86098 0.79665 0.82367 0.77319 1.19852 1.20531 1.21513 1.21103 0.92241 0.90752 1.47441 0.93686 1.19646 0.97027 0.92828 0.89335 0.94294 1.22475 0.99431 0.95654 0.98281 1.22825 0.99852 0.95708 0.89701 1.63472 1.43527 1.18137 1.03910 1.21517 0.90976 0.92180 0.95200 0.94172 1.20431 0.94433 0.98072 0.94039 1.21541 0.99437 0.96925 0.94104 1.22210 0.97764 0.99298 1.00458 1.23008 0.90485 0.98787 0.97319 1.67626 1.39494 1.11473 1.04583 1.22339 0.95142 0.91766 0.93634 0.93329 0.93010 0.92830 0.89532 0.93316 0.84733 0.85301 0.82823 0.81117 0.83840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.57 12.65 21.45 0.27 -52.30 16 2 C 0.03 1.57 5.46 84.66 0.46 2.04 16 3 Si 0.92 45.42 29.54 68.60 2.03 47.44 16 4 H -0.27 -13.62 7.11 99.48 0.71 -12.91 16 5 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 6 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 7 C -0.48 -25.14 5.65 25.60 0.14 -24.99 16 8 H 0.04 2.48 7.00 -2.91 -0.02 2.45 16 9 C 0.03 1.45 3.23 -10.64 -0.03 1.42 16 10 H 0.04 2.07 7.01 -2.39 -0.02 2.05 16 11 C -0.12 -4.74 6.64 31.49 0.21 -4.53 16 12 C 0.05 1.50 7.47 86.45 0.65 2.15 16 13 N -0.66 -22.48 6.38 -482.78 -3.08 -25.56 16 14 C 0.11 4.47 3.32 44.32 0.15 4.62 16 15 H 0.04 1.52 8.09 -2.39 -0.02 1.50 16 16 C -0.07 -2.80 4.14 -19.77 -0.08 -2.89 16 17 C -0.09 -3.62 9.86 22.47 0.22 -3.40 16 18 C -0.18 -6.12 10.11 22.36 0.23 -5.90 16 19 C 0.06 2.16 11.18 84.69 0.95 3.11 16 20 N -0.52 -21.96 10.36 -195.84 -2.03 -23.99 16 21 C 0.13 5.53 8.74 84.67 0.74 6.27 16 22 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 23 H 0.05 2.16 7.70 -2.39 -0.02 2.14 16 24 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 26 H 0.05 1.32 8.14 -2.39 -0.02 1.31 16 27 H 0.34 9.57 8.92 -89.70 -0.80 8.77 16 28 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 29 H 0.15 4.11 8.06 -2.91 -0.02 4.09 16 30 H 0.17 4.84 8.06 -2.91 -0.02 4.81 16 31 H 0.14 6.39 7.24 -2.91 -0.02 6.37 16 Total: -1.00 -61.09 258.91 1.14 -59.95 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.33 Total: 16.57 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: 3.63 Total: -22.11 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -4.84 Total: -101.86 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -61.09 1.14 -59.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260569278.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.796 kcal (2) G-P(sol) polarization free energy of solvation -61.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds