Wall clock time and date at job start Mon Mar 30 2020 03:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38878 * 120.32875 * 2 1 4 4 C 1.38314 * 118.50646 * 180.21641 * 3 2 1 5 5 C 1.39222 * 119.08800 * 359.50607 * 4 3 2 6 6 N 1.38842 * 119.71212 * 180.27478 * 5 4 3 7 7 C 1.36911 * 119.99880 * 185.00351 * 6 5 4 8 8 H 1.08002 * 120.00306 * 127.45805 * 7 6 5 9 9 C 1.38821 * 119.99949 * 307.45456 * 7 6 5 10 10 N 1.31565 * 119.99804 * 172.41696 * 9 7 6 11 11 Si 1.86802 * 120.00020 * 352.42166 * 9 7 6 12 12 H 1.48497 * 109.46888 * 96.02318 * 11 9 7 13 13 H 1.48491 * 109.47052 * 216.02469 * 11 9 7 14 14 H 1.48500 * 109.46889 * 336.02382 * 11 9 7 15 15 C 1.46494 * 120.00151 * 4.99864 * 6 5 4 16 16 C 1.53001 * 117.50021 * 181.37544 * 15 6 5 17 17 C 1.53005 * 117.49659 * 112.71775 * 15 6 5 18 18 N 1.32500 * 120.57723 * 0.25499 * 5 4 3 19 19 C 1.31898 * 121.61840 * 359.97438 * 18 5 4 20 20 H 1.08990 * 109.47205 * 270.27791 * 1 2 3 21 21 H 1.08999 * 109.46749 * 30.28306 * 1 2 3 22 22 H 1.08998 * 109.46563 * 150.27523 * 1 2 3 23 23 H 1.07999 * 120.74969 * 359.97438 * 3 2 1 24 24 H 1.07996 * 120.45959 * 179.78203 * 4 3 2 25 25 H 0.97000 * 119.99589 * 179.97438 * 10 9 7 26 26 H 1.08997 * 115.54802 * 327.04700 * 15 6 5 27 27 H 1.08998 * 117.50042 * 0.02562 * 16 15 6 28 28 H 1.09005 * 117.49471 * 145.02345 * 16 15 6 29 29 H 1.09001 * 117.49138 * 214.98182 * 17 15 6 30 30 H 1.08998 * 117.49937 * 359.97438 * 17 15 6 31 31 H 1.08001 * 119.56072 * 180.02562 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2084 1.1987 0.0000 4 6 3.5908 1.1547 -0.0046 5 6 4.2286 -0.0828 0.0015 6 7 5.6158 -0.1420 0.0027 7 6 6.2494 -1.3518 -0.0948 8 1 7.0068 -1.5054 -0.8491 9 6 5.9182 -2.3809 0.7761 10 7 6.4150 -3.5849 0.5906 11 14 4.7672 -2.0562 2.2111 12 1 3.3831 -2.4374 1.8315 13 1 5.1983 -2.8597 3.3830 14 1 4.8053 -0.6131 2.5594 15 6 6.4014 1.0899 0.1083 16 6 7.9256 0.9611 0.0717 17 6 7.2171 1.3003 1.3856 18 7 3.5234 -1.2045 0.0064 19 6 2.2045 -1.1921 0.0063 20 1 -0.3633 0.0050 1.0276 21 1 -0.3633 0.8874 -0.5182 22 1 -0.3632 -0.8925 -0.5096 23 1 1.6861 2.1440 -0.0004 24 1 4.1676 2.0678 -0.0083 25 1 6.1839 -4.3039 1.1994 26 1 5.9595 1.9707 -0.3575 27 1 8.3438 -0.0402 -0.0313 28 1 8.4863 1.7575 -0.4178 29 1 7.3120 2.3197 1.7598 30 1 7.1688 0.5223 2.1475 31 1 1.6629 -2.1265 0.0108 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260570359.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:50 Heat of formation + Delta-G solvation = 84.124269 kcal Electronic energy + Delta-G solvation = -14781.440392 eV Core-core repulsion = 12450.483663 eV Total energy + Delta-G solvation = -2330.956728 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.58278 -37.32195 -34.03885 -32.21781 -31.63832 -30.26432 -26.09598 -24.82953 -22.18610 -21.86752 -21.50912 -19.73767 -17.96912 -16.35521 -15.70211 -14.71477 -14.51890 -14.31171 -13.68748 -13.59686 -12.88403 -12.71208 -12.47710 -12.33793 -12.03667 -11.53795 -11.15066 -10.88324 -10.79367 -10.36617 -10.21298 -9.88805 -9.68739 -9.02772 -8.63140 -8.49223 -8.12427 -6.59708 -6.13673 -3.98097 2.11940 2.26227 3.45884 3.51664 3.58744 4.14910 4.46565 4.49625 4.88569 5.20232 5.36354 5.48689 5.54751 5.62033 5.64807 5.73736 5.79016 5.98229 6.00651 6.16986 6.19512 6.24096 6.42908 6.60146 6.68222 6.85896 6.90178 7.09120 7.48004 7.92787 8.05026 8.58027 9.09537 9.41886 9.64427 10.87702 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.026652 B = 0.014226 C = 0.010598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.335193 B = 1967.706262 C = 2641.282348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.256 4.256 3 C -0.034 4.034 4 C -0.265 4.265 5 C 0.387 3.613 6 N -0.430 5.430 7 C -0.328 4.328 8 H 0.093 0.907 9 C 0.094 3.906 10 N -0.877 5.877 11 Si 0.921 3.079 12 H -0.261 1.261 13 H -0.315 1.315 14 H -0.282 1.282 15 C 0.079 3.921 16 C -0.170 4.170 17 C -0.200 4.200 18 N -0.522 5.522 19 C 0.157 3.843 20 H 0.052 0.948 21 H 0.052 0.948 22 H 0.055 0.945 23 H 0.116 0.884 24 H 0.119 0.881 25 H 0.271 0.729 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.749 9.194 0.436 10.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.263 4.263 3 C -0.059 4.059 4 C -0.292 4.292 5 C 0.151 3.849 6 N -0.125 5.125 7 C -0.455 4.455 8 H 0.111 0.889 9 C -0.114 4.114 10 N -0.512 5.512 11 Si 0.753 3.247 12 H -0.187 1.187 13 H -0.245 1.245 14 H -0.207 1.207 15 C -0.027 4.027 16 C -0.207 4.207 17 C -0.239 4.239 18 N -0.240 5.240 19 C -0.004 4.004 20 H 0.070 0.930 21 H 0.071 0.929 22 H 0.074 0.926 23 H 0.134 0.866 24 H 0.137 0.863 25 H 0.081 0.919 26 H 0.127 0.873 27 H 0.130 0.870 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.964 8.197 0.455 9.593 hybrid contribution -0.950 0.788 0.783 1.462 sum -5.914 8.985 1.238 10.827 Atomic orbital electron populations 1.20374 0.91779 1.01343 1.00708 1.20228 0.96213 0.94225 1.15615 1.20901 0.93220 0.96968 0.94819 1.21243 0.94932 0.97182 1.15816 1.18644 0.86348 0.88575 0.91334 1.41863 0.99086 1.05010 1.66494 1.18693 1.23124 0.86400 1.17238 0.88919 1.25444 0.94462 0.94552 0.96946 1.69761 1.43214 1.00873 1.37347 0.86152 0.82260 0.77478 0.78763 1.18664 1.24539 1.20734 1.21674 0.90488 0.89621 1.00884 1.23154 0.93823 1.03649 1.00089 1.23307 1.06475 1.01445 0.92707 1.67172 1.07266 1.29178 1.20407 1.22144 0.89171 0.96622 0.92450 0.92964 0.92856 0.92577 0.86646 0.86318 0.91930 0.87293 0.86955 0.89402 0.89559 0.88796 0.84493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.16 10.03 36.01 0.36 -0.80 16 2 C -0.26 -4.67 5.90 -104.43 -0.62 -5.29 16 3 C -0.03 -0.60 9.85 -39.32 -0.39 -0.99 16 4 C -0.27 -5.38 9.33 -39.19 -0.37 -5.74 16 5 C 0.39 9.35 5.55 -155.06 -0.86 8.49 16 6 N -0.43 -10.60 2.45 -107.96 -0.26 -10.87 16 7 C -0.33 -9.18 8.24 -15.07 -0.12 -9.30 16 8 H 0.09 2.76 7.63 -52.49 -0.40 2.36 16 9 C 0.09 2.73 5.09 -17.45 -0.09 2.64 16 10 N -0.88 -26.47 13.96 55.49 0.77 -25.70 16 11 Si 0.92 24.53 24.35 -169.99 -4.14 20.39 16 12 H -0.26 -6.85 5.64 56.52 0.32 -6.53 16 13 H -0.32 -8.39 7.11 56.52 0.40 -7.99 16 14 H -0.28 -7.58 6.93 56.52 0.39 -7.18 16 15 C 0.08 1.58 5.82 -67.93 -0.40 1.19 16 16 C -0.17 -3.06 9.82 -26.69 -0.26 -3.32 16 17 C -0.20 -3.67 10.39 -26.69 -0.28 -3.95 16 18 N -0.52 -13.12 5.41 -12.43 -0.07 -13.19 16 19 C 0.16 3.35 9.88 -17.57 -0.17 3.17 16 20 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.05 0.64 8.10 -51.93 -0.42 0.22 16 22 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 23 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 24 H 0.12 2.11 6.17 -52.49 -0.32 1.79 16 25 H 0.27 7.74 8.31 -40.82 -0.34 7.40 16 26 H 0.11 1.88 6.55 -51.93 -0.34 1.54 16 27 H 0.11 2.31 6.81 -51.93 -0.35 1.96 16 28 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 31 H 0.14 2.60 8.06 -52.49 -0.42 2.18 16 LS Contribution 256.08 15.07 3.86 3.86 Total: -1.00 -31.57 256.08 -7.05 -38.62 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -4.02 Total: 0.79 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -3.19 Total: -13.90 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: 0.44 Total: -49.75 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -4.14 Total: 20.39 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -31.57 -7.05 -38.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260570359.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.743 kcal (2) G-P(sol) polarization free energy of solvation -31.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds