Wall clock time and date at job start Mon Mar 30 2020 02:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86790 * 120.00098 * 2 1 4 4 H 1.48506 * 109.47301 * 269.99932 * 3 2 1 5 5 H 1.48507 * 109.47307 * 29.99871 * 3 2 1 6 6 H 1.48496 * 109.47406 * 149.99735 * 3 2 1 7 7 C 1.37879 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99741 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99943 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46916 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46916 * 179.97438 * 10 9 7 12 12 C 1.38616 * 120.79968 * 265.00024 * 11 10 9 13 13 N 1.32317 * 119.10438 * 179.97438 * 12 11 10 14 14 C 1.31814 * 120.81718 * 359.97438 * 13 12 11 15 15 N 1.31781 * 121.75251 * 0.02562 * 14 13 12 16 16 C 1.32343 * 120.82134 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.44814 * 180.02562 * 16 15 14 18 18 C 1.53000 * 117.49946 * 8.59339 * 17 16 15 19 19 C 1.53000 * 60.00060 * 252.51153 * 18 17 16 20 20 H 0.96999 * 119.99623 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47066 * 60.00363 * 9 7 2 22 22 H 1.09003 * 109.47316 * 300.00041 * 9 7 2 23 23 H 1.08997 * 109.47027 * 60.00253 * 10 9 7 24 24 H 1.08996 * 109.47403 * 299.99831 * 10 9 7 25 25 H 1.08004 * 120.44826 * 0.02562 * 12 11 10 26 26 H 1.07998 * 119.12176 * 179.71865 * 14 13 12 27 27 H 1.09002 * 115.54888 * 154.30983 * 17 16 15 28 28 H 1.08998 * 117.49693 * 359.97438 * 18 17 16 29 29 H 1.08993 * 117.49699 * 145.02339 * 18 17 16 30 30 H 1.09002 * 117.50260 * 252.50877 * 19 18 17 31 31 H 1.09008 * 117.51798 * 107.48074 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4916 -4.9672 0.0025 12 6 1.2261 -5.6329 1.1890 13 7 0.5613 -6.7763 1.1506 14 6 0.1533 -7.2820 0.0037 15 7 0.3876 -6.6772 -1.1434 16 6 1.0474 -5.5307 -1.1831 17 6 1.3102 -4.8460 -2.4996 18 6 0.6201 -5.4139 -3.7414 19 6 2.1243 -5.6121 -3.5442 20 1 -0.4849 0.8401 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6239 -2.5567 0.8903 23 1 2.8711 -3.6040 0.8923 24 1 2.8725 -3.6048 -0.8877 25 1 1.5566 -5.2233 2.1321 26 1 -0.3831 -8.2194 0.0038 27 1 1.4464 -3.7657 -2.4487 28 1 -0.0237 -6.2830 -3.6062 29 1 0.3018 -4.7072 -4.5078 30 1 2.7957 -5.0359 -4.1809 31 1 2.4701 -6.6113 -3.2791 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260589610.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:33 Heat of formation + Delta-G solvation = 52.201784 kcal Electronic energy + Delta-G solvation = -14097.980231 eV Core-core repulsion = 11765.639240 eV Total energy + Delta-G solvation = -2332.340991 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.81855 -37.01496 -34.67519 -32.91552 -32.45252 -29.38707 -25.60479 -25.12231 -22.94638 -22.13643 -20.89975 -20.48845 -17.50537 -16.62584 -16.44242 -15.10762 -14.62119 -14.36551 -13.85373 -13.82412 -13.21168 -12.98528 -12.39081 -11.70344 -11.45614 -11.35996 -11.15672 -10.98678 -10.84643 -10.46368 -10.22510 -10.06335 -9.89492 -9.70739 -9.18866 -8.86100 -8.51903 -8.42416 -6.07028 -4.11040 1.29869 1.38055 3.27593 3.34540 3.37232 3.84852 4.23479 4.37116 4.40792 4.51050 4.70064 5.07576 5.24024 5.28810 5.35140 5.39780 5.46890 5.77863 5.83199 5.98841 6.12377 6.29879 6.42210 6.48087 6.53334 6.70190 6.92065 7.34264 7.57395 7.66120 7.90962 8.30137 8.41285 8.95609 9.53836 11.03804 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.031332 B = 0.007719 C = 0.006741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.438757 B = 3626.761309 C = 4152.413989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.030 3.970 10 C -0.072 4.072 11 C -0.151 4.151 12 C 0.139 3.861 13 N -0.527 5.527 14 C 0.270 3.730 15 N -0.521 5.521 16 C 0.202 3.798 17 C -0.119 4.119 18 C -0.157 4.157 19 C -0.160 4.160 20 H 0.261 0.739 21 H 0.019 0.981 22 H 0.017 0.983 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.166 0.834 26 H 0.188 0.812 27 H 0.138 0.862 28 H 0.105 0.895 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.815 -10.611 -3.638 11.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.111 4.111 11 C -0.155 4.155 12 C -0.026 4.026 13 N -0.240 5.240 14 C -0.019 4.019 15 N -0.235 5.235 16 C 0.056 3.944 17 C -0.138 4.138 18 C -0.195 4.195 19 C -0.198 4.198 20 H 0.071 0.929 21 H 0.037 0.963 22 H 0.035 0.965 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.183 0.817 26 H 0.205 0.795 27 H 0.156 0.844 28 H 0.123 0.877 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.151 -11.369 -3.609 12.120 hybrid contribution 0.727 1.736 0.166 1.889 sum 2.878 -9.633 -3.443 10.627 Atomic orbital electron populations 1.69971 1.06088 1.26764 1.50315 1.25024 0.94835 0.99310 0.95151 0.86583 0.79846 0.83368 0.78154 1.20610 1.21202 1.19806 1.21198 0.93075 0.90715 1.51257 0.92426 1.19097 0.93577 0.90390 0.97623 1.20772 0.98335 0.89879 1.02106 1.21908 1.00043 0.99525 0.94024 1.23134 0.91675 0.89467 0.98334 1.68307 1.11862 1.12972 1.30884 1.24669 0.95334 0.98927 0.82928 1.68009 1.14563 1.09794 1.31151 1.20602 0.90191 0.89483 0.94089 1.21134 1.06845 0.99743 0.86041 1.22923 0.95039 1.03426 0.98084 1.22917 0.94674 1.01100 1.01078 0.92886 0.96262 0.96505 0.91610 0.91291 0.81717 0.79501 0.84405 0.87698 0.88509 0.88228 0.89028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.52 -14.17 9.11 -34.44 -0.31 -14.48 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.74 4.83 -27.88 -0.13 0.61 16 10 C -0.07 -1.41 4.65 -27.88 -0.13 -1.54 16 11 C -0.15 -2.75 5.17 -104.36 -0.54 -3.29 16 12 C 0.14 2.36 10.99 -17.20 -0.19 2.17 16 13 N -0.53 -8.83 10.44 -14.58 -0.15 -8.98 16 14 C 0.27 4.19 12.29 -92.15 -1.13 3.06 16 15 N -0.52 -8.77 9.49 -10.80 -0.10 -8.88 16 16 C 0.20 3.57 6.48 -82.25 -0.53 3.04 16 17 C -0.12 -1.92 5.24 -91.77 -0.48 -2.40 16 18 C -0.16 -2.17 10.04 -26.73 -0.27 -2.43 16 19 C -0.16 -2.09 10.23 -26.73 -0.27 -2.37 16 20 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 21 H 0.02 0.50 7.26 -51.93 -0.38 0.13 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 24 H 0.07 1.29 7.07 -51.93 -0.37 0.92 16 25 H 0.17 2.45 8.06 -52.48 -0.42 2.02 16 26 H 0.19 2.19 8.06 -52.49 -0.42 1.76 16 27 H 0.14 2.44 6.14 -51.93 -0.32 2.12 16 28 H 0.10 1.47 7.61 -51.93 -0.39 1.07 16 29 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.09 1.19 8.14 -51.92 -0.42 0.76 16 LS Contribution 269.45 15.07 4.06 4.06 Total: -1.00 -30.06 269.45 -8.53 -38.59 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -3.96 Total: 0.80 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -4.09 Total: -16.10 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.48 Total: -43.39 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.06 -8.53 -38.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260589610.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.792 kcal (2) G-P(sol) polarization free energy of solvation -30.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds