Wall clock time and date at job start Mon Mar 30 2020 02:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99933 * 2 1 4 4 H 1.48500 * 109.47722 * 269.99988 * 3 2 1 5 5 H 1.48502 * 109.47150 * 30.00277 * 3 2 1 6 6 H 1.48504 * 109.47035 * 149.99723 * 3 2 1 7 7 C 1.37877 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99718 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99702 * 179.97438 * 7 2 1 10 10 C 1.50698 * 109.46566 * 179.97438 * 9 7 2 11 11 C 1.38628 * 120.80347 * 264.97500 * 10 9 7 12 12 N 1.32320 * 119.10226 * 180.02562 * 11 10 9 13 13 C 1.31806 * 120.81836 * 359.97438 * 12 11 10 14 14 N 1.31781 * 121.75648 * 359.72230 * 13 12 11 15 15 C 1.32340 * 120.81684 * 0.56568 * 14 13 12 16 16 C 1.50701 * 120.44660 * 179.71886 * 15 14 13 17 17 C 1.53782 * 113.61600 * 59.72227 * 16 15 14 18 18 C 1.53781 * 87.08260 * 219.93680 * 17 16 15 19 19 C 1.53786 * 87.17350 * 25.39213 * 18 17 16 20 20 H 0.97004 * 119.99995 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47028 * 60.00379 * 9 7 2 22 22 H 1.08993 * 109.47521 * 299.99506 * 9 7 2 23 23 H 1.07997 * 120.44466 * 0.02562 * 11 10 9 24 24 H 1.08004 * 119.11975 * 179.97438 * 13 12 11 25 25 H 1.08997 * 112.85060 * 190.92425 * 16 15 14 26 26 H 1.09001 * 113.61250 * 105.38498 * 17 16 15 27 27 H 1.08997 * 113.61225 * 334.48339 * 17 16 15 28 28 H 1.09002 * 113.61445 * 139.98212 * 18 17 16 29 29 H 1.09002 * 113.61408 * 270.79943 * 18 17 16 30 30 H 1.08993 * 113.61491 * 89.15923 * 19 18 17 31 31 H 1.09000 * 113.61138 * 220.06261 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0138 -2.6148 -0.0010 11 6 4.3492 -3.2491 1.1852 12 7 4.7872 -4.4971 1.1461 13 6 4.9054 -5.1357 -0.0009 14 7 4.5906 -4.5668 -1.1471 15 6 4.1511 -3.3191 -1.1866 16 6 3.7995 -2.6746 -2.5027 17 6 2.6878 -3.4089 -3.2706 18 6 3.4951 -3.1300 -4.5494 19 6 4.7442 -3.0624 -3.6548 20 1 -0.4850 0.8401 -0.0004 21 1 3.8752 -0.6804 0.8889 22 1 3.8746 -0.6801 -0.8911 23 1 4.2542 -2.7316 2.1283 24 1 5.2662 -6.1537 -0.0009 25 1 3.6351 -1.6005 -2.4174 26 1 1.7257 -2.8974 -3.2413 27 1 2.6129 -4.4679 -3.0239 28 1 3.5048 -3.9645 -5.2505 29 1 3.2465 -2.1810 -5.0245 30 1 5.2325 -4.0265 -3.5133 31 1 5.4399 -2.2715 -3.9353 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260602242.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:34 Heat of formation + Delta-G solvation = 38.044026 kcal Electronic energy + Delta-G solvation = -14483.128819 eV Core-core repulsion = 12150.173901 eV Total energy + Delta-G solvation = -2332.954918 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.08925 -39.30489 -35.90645 -34.38549 -33.89274 -29.98531 -27.56700 -26.45819 -25.71095 -23.81644 -22.64543 -20.41448 -19.00275 -18.55898 -17.85169 -16.51869 -16.25288 -15.76020 -15.31703 -15.27527 -14.46222 -14.34572 -14.00053 -13.36251 -13.27993 -13.23475 -13.12723 -12.47673 -12.06956 -11.74015 -11.69370 -11.60911 -11.49465 -11.16492 -11.06561 -10.77701 -10.04006 -9.93502 -8.29094 -6.35155 0.11594 0.15053 1.38646 1.40848 1.51327 2.35545 2.86296 3.05329 3.18028 3.37341 3.59289 3.78280 3.87360 4.07013 4.11622 4.15960 4.28679 4.64462 4.78228 4.82778 4.91979 4.95887 5.05828 5.10238 5.12139 5.28823 5.44063 5.48946 5.59380 5.65189 6.09811 6.25054 6.69223 7.20189 7.28193 8.87250 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.023694 B = 0.011453 C = 0.008847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.440525 B = 2444.219003 C = 3164.313200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.015 3.985 3 Si 0.944 3.056 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.242 1.242 7 C -0.512 4.512 8 H 0.022 0.978 9 C 0.033 3.967 10 C -0.159 4.159 11 C 0.131 3.869 12 N -0.536 5.536 13 C 0.264 3.736 14 N -0.522 5.522 15 C 0.176 3.824 16 C -0.078 4.078 17 C -0.123 4.123 18 C -0.123 4.123 19 C -0.113 4.113 20 H 0.267 0.733 21 H 0.041 0.959 22 H 0.041 0.959 23 H 0.175 0.825 24 H 0.225 0.775 25 H 0.102 0.898 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.872 -4.273 -5.586 12.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.183 4.183 3 Si 0.766 3.234 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.165 1.165 7 C -0.550 4.550 8 H 0.040 0.960 9 C -0.005 4.005 10 C -0.163 4.163 11 C -0.033 4.033 12 N -0.250 5.250 13 C -0.024 4.024 14 N -0.236 5.236 15 C 0.031 3.969 16 C -0.097 4.097 17 C -0.162 4.162 18 C -0.161 4.161 19 C -0.151 4.151 20 H 0.076 0.924 21 H 0.059 0.941 22 H 0.059 0.941 23 H 0.193 0.807 24 H 0.241 0.759 25 H 0.120 0.880 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.058 -5.126 -5.566 13.399 hybrid contribution -0.811 1.513 0.475 1.781 sum 10.247 -3.613 -5.092 11.999 Atomic orbital electron populations 1.70053 1.08365 1.28264 1.51933 1.25880 0.95454 1.03087 0.93844 0.85756 0.79719 0.78323 0.79554 1.18740 1.21251 1.16477 1.20917 0.90141 0.92693 1.51252 0.95965 1.18536 0.94545 0.88940 0.98495 1.21831 0.98748 1.00589 0.95148 1.23330 0.91000 0.90340 0.98659 1.68372 1.15847 1.09304 1.31478 1.25459 0.93371 1.01117 0.82458 1.68083 1.13436 1.10658 1.31432 1.21552 0.90235 0.89474 0.95665 1.21745 0.99440 0.99772 0.88755 1.22777 0.96654 0.99753 0.96984 1.22754 0.95013 1.02882 0.95411 1.22893 0.96231 1.02501 0.93437 0.92363 0.94124 0.94079 0.80748 0.75874 0.88021 0.93049 0.90702 0.89563 0.89294 0.89154 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.36 13.96 21.45 0.30 -57.06 16 2 C 0.02 0.83 5.47 84.65 0.46 1.30 16 3 Si 0.94 41.36 27.47 68.60 1.88 43.25 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.24 -9.63 6.54 99.48 0.65 -8.98 16 7 C -0.51 -28.08 9.65 25.60 0.25 -27.84 16 8 H 0.02 1.40 7.98 -2.91 -0.02 1.37 16 9 C 0.03 1.47 3.63 29.10 0.11 1.57 16 10 C -0.16 -6.51 5.10 -19.69 -0.10 -6.61 16 11 C 0.13 4.94 10.99 84.71 0.93 5.87 16 12 N -0.54 -18.86 10.44 -200.03 -2.09 -20.95 16 13 C 0.26 8.38 12.28 180.88 2.22 10.61 16 14 N -0.52 -18.20 9.52 -188.08 -1.79 -19.99 16 15 C 0.18 6.74 6.02 42.56 0.26 7.00 16 16 C -0.08 -2.73 3.76 -10.95 -0.04 -2.77 16 17 C -0.12 -4.12 7.62 31.12 0.24 -3.88 16 18 C -0.12 -3.11 8.08 31.12 0.25 -2.86 16 19 C -0.11 -3.03 7.59 31.18 0.24 -2.79 16 20 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 21 H 0.04 1.72 7.13 -2.39 -0.02 1.70 16 22 H 0.04 1.74 5.82 -2.39 -0.01 1.72 16 23 H 0.18 5.88 8.06 -2.91 -0.02 5.85 16 24 H 0.23 5.05 8.06 -2.91 -0.02 5.02 16 25 H 0.10 3.84 6.00 -2.39 -0.01 3.82 16 26 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.07 2.54 8.05 -2.39 -0.02 2.52 16 28 H 0.09 1.82 8.14 -2.39 -0.02 1.81 16 29 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.09 2.43 7.50 -2.39 -0.02 2.42 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -64.04 261.82 4.18 -59.86 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 1.06 Total: 15.30 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: 4.81 Total: -20.40 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -3.58 Total: -98.00 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 1.88 Total: 43.25 kcal Total: -64.04 4.18 -59.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260602242.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.900 kcal (2) G-P(sol) polarization free energy of solvation -64.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds